Wall clock time and date at job start Wed Apr 1 2020 04:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46313 * 2 1 4 4 C 1.53042 * 109.45960 * 240.02565 * 2 1 3 5 5 C 1.53193 * 109.31426 * 178.61505 * 4 2 1 6 6 N 1.46929 * 108.77249 * 54.63672 * 5 4 2 7 7 C 1.34777 * 120.62630 * 126.37176 * 6 5 4 8 8 O 1.21625 * 119.99572 * 186.89714 * 7 6 5 9 9 C 1.47323 * 120.00280 * 6.89847 * 7 6 5 10 10 C 1.36568 * 126.21313 * 187.05841 * 9 7 6 11 11 N 1.34869 * 106.78914 * 179.97438 * 10 9 7 12 12 C 1.36303 * 107.86194 * 0.07491 * 11 10 9 13 13 N 1.29794 * 108.92463 * 359.90193 * 12 11 10 14 14 C 1.51100 * 123.90294 * 179.88717 * 12 11 10 15 15 C 1.53394 * 108.19065 * 344.04345 * 14 12 11 16 16 C 1.53136 * 109.28725 * 48.93354 * 15 14 12 17 17 C 1.46579 * 127.50158 * 180.13204 * 11 10 9 18 18 C 1.46924 * 118.74095 * 306.64404 * 6 5 4 19 19 H 1.09005 * 109.58679 * 293.57272 * 18 6 5 20 20 C 1.52994 * 109.58773 * 173.14579 * 18 6 5 21 21 N 1.46499 * 109.47267 * 68.56134 * 20 18 6 22 22 C 1.36935 * 120.00021 * 174.77477 * 21 20 18 23 23 H 1.08001 * 120.00111 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99918 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99785 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99902 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47285 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47309 * 119.99610 * 26 24 22 29 29 H 1.48508 * 109.46841 * 239.99815 * 26 24 22 30 30 C 1.52762 * 109.00787 * 53.30854 * 18 6 5 31 31 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47068 * 299.97313 * 1 2 3 33 33 H 1.09000 * 109.47249 * 59.97396 * 1 2 3 34 34 H 1.09001 * 109.49300 * 58.66882 * 4 2 1 35 35 H 1.08993 * 109.52829 * 298.58545 * 4 2 1 36 36 H 1.09003 * 109.58321 * 294.85036 * 5 4 2 37 37 H 1.08992 * 109.70209 * 174.49665 * 5 4 2 38 38 H 1.08001 * 126.60453 * 359.96557 * 10 9 7 39 39 H 1.09001 * 109.71930 * 224.37310 * 14 12 11 40 40 H 1.09003 * 109.75780 * 103.74229 * 14 12 11 41 41 H 1.09006 * 109.50577 * 168.88515 * 15 14 12 42 42 H 1.08989 * 109.50786 * 288.97557 * 15 14 12 43 43 H 1.09002 * 109.46169 * 50.24286 * 16 15 14 44 44 H 1.08995 * 109.46120 * 170.20206 * 16 15 14 45 45 H 1.08996 * 109.58698 * 282.57300 * 17 11 10 46 46 H 1.09004 * 109.57980 * 42.98255 * 17 11 10 47 47 H 1.09004 * 109.47156 * 188.56421 * 20 18 6 48 48 H 1.09001 * 109.46971 * 308.56104 * 20 18 6 49 49 H 0.97002 * 119.99977 * 354.76828 * 21 20 18 50 50 H 0.97005 * 119.99861 * 179.97438 * 25 24 22 51 51 H 1.08994 * 109.56435 * 185.55445 * 30 18 6 52 52 H 1.08997 * 109.38349 * 65.51675 * 30 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6888 -1.2642 6 7 4.0678 -1.2489 0.0001 7 6 4.9613 -2.2579 0.0002 8 8 5.2699 -2.7968 1.0459 9 6 5.5643 -2.7081 -1.2664 10 6 6.3726 -3.7961 -1.4334 11 7 6.6980 -3.8425 -2.7415 12 6 6.0927 -2.7898 -3.3605 13 7 5.4170 -2.1159 -2.4807 14 6 6.2178 -2.4950 -4.8372 15 6 7.4067 -3.2939 -5.3860 16 6 7.2938 -4.7498 -4.9247 17 6 7.5455 -4.8304 -3.4156 18 6 3.5671 -0.6923 1.2643 19 1 3.9097 0.3369 1.3715 20 6 4.0829 -1.5322 2.4345 21 7 5.5307 -1.3503 2.5653 22 6 6.2005 -1.9216 3.6142 23 1 5.6614 -2.5059 4.3452 24 6 7.5723 -1.7488 3.7384 25 7 8.2291 -1.0363 2.8479 26 14 8.4861 -2.5287 5.1688 27 1 7.5260 -3.2736 6.0225 28 1 9.5150 -3.4642 4.6479 29 1 9.1436 -1.4678 5.9736 30 6 2.0398 -0.7207 1.2501 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3634 0.5142 -0.8897 34 1 1.6572 -0.2209 -2.1398 35 1 1.6978 -1.7557 -1.2388 36 1 3.9142 0.3407 -1.3674 37 1 3.9436 -1.2833 -2.0984 38 1 6.6901 -4.4863 -0.6659 39 1 6.3909 -1.4291 -4.9860 40 1 5.3046 -2.7945 -5.3514 41 1 7.3992 -3.2556 -6.4753 42 1 8.3366 -2.8650 -5.0130 43 1 6.2944 -5.1244 -5.1459 44 1 8.0326 -5.3553 -5.4496 45 1 8.5936 -4.6144 -3.2090 46 1 7.2985 -5.8294 -3.0563 47 1 3.5921 -1.2140 3.3543 48 1 3.8640 -2.5841 2.2511 49 1 6.0148 -0.8253 1.9089 50 1 9.1876 -0.9152 2.9349 51 1 1.6572 -0.2206 2.1398 52 1 1.6973 -1.7554 1.2388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263992051.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:12 Heat of formation + Delta-G solvation = 51.460046 kcal Electronic energy + Delta-G solvation = -32366.286042 eV Core-core repulsion = 28367.389399 eV Total energy + Delta-G solvation = -3998.896643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.39164 -41.22631 -38.44488 -37.45384 -36.25128 -34.83380 -34.26432 -33.68093 -31.54929 -30.81336 -29.59342 -29.09001 -27.14491 -25.69631 -24.60132 -24.23685 -23.92508 -23.03449 -22.21247 -20.98608 -20.03357 -19.95018 -19.05903 -18.00538 -17.20387 -17.04995 -16.79018 -16.64356 -15.96257 -15.64229 -15.46751 -15.19528 -15.15522 -15.03871 -14.87940 -14.68533 -14.58206 -14.52131 -14.28982 -14.00237 -13.90302 -13.59711 -13.15464 -12.87148 -12.83247 -12.73977 -12.63626 -12.53002 -12.15796 -12.09079 -12.00020 -11.96782 -11.90031 -11.82397 -11.70859 -11.49498 -11.21177 -10.91578 -10.70206 -10.40813 -9.91989 -9.55747 -9.24662 -8.60762 -7.83237 -5.02920 0.70411 1.41794 1.44109 1.48749 1.54674 1.70277 2.29449 2.61081 2.72964 3.21489 3.49458 3.58344 3.67034 3.74187 3.80926 3.87227 3.95005 4.08117 4.15200 4.17202 4.31991 4.35306 4.42845 4.44047 4.48028 4.52180 4.58093 4.61080 4.80618 4.81518 4.87741 4.89027 4.95029 4.96515 4.98619 5.05390 5.07844 5.12580 5.15909 5.18633 5.19930 5.25628 5.32693 5.36234 5.45173 5.52165 5.58794 5.62537 5.97846 6.23515 6.36879 6.70866 6.92179 7.42134 7.62644 8.21887 8.46238 9.42112 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007209 B = 0.004786 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3883.293281 B = 5848.856119 C = 9211.104730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.116 4.116 5 C 0.081 3.919 6 N -0.600 5.600 7 C 0.556 3.444 8 O -0.510 6.510 9 C -0.076 4.076 10 C 0.021 3.979 11 N -0.448 5.448 12 C 0.207 3.793 13 N -0.478 5.478 14 C -0.032 4.032 15 C -0.123 4.123 16 C -0.126 4.126 17 C 0.088 3.912 18 C 0.145 3.855 19 H 0.054 0.946 20 C 0.165 3.835 21 N -0.704 5.704 22 C -0.208 4.208 23 H 0.064 0.936 24 C -0.087 4.087 25 N -0.977 5.977 26 Si 0.970 3.030 27 H -0.270 1.270 28 H -0.297 1.297 29 H -0.292 1.292 30 C -0.110 4.110 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.138 0.862 38 H 0.177 0.823 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.016 0.984 48 H 0.024 0.976 49 H 0.364 0.636 50 H 0.243 0.757 51 H 0.083 0.917 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 -4.793 -24.134 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.041 4.041 6 N -0.335 5.335 7 C 0.343 3.657 8 O -0.384 6.384 9 C -0.204 4.204 10 C -0.119 4.119 11 N -0.130 5.130 12 C -0.056 4.056 13 N -0.199 5.199 14 C -0.070 4.070 15 C -0.160 4.160 16 C -0.163 4.163 17 C -0.032 4.032 18 C 0.042 3.958 19 H 0.072 0.928 20 C 0.039 3.961 21 N -0.344 5.344 22 C -0.341 4.341 23 H 0.082 0.918 24 C -0.277 4.277 25 N -0.631 5.631 26 Si 0.800 3.200 27 H -0.194 1.194 28 H -0.225 1.225 29 H -0.220 1.220 30 C -0.148 4.148 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.154 0.846 38 H 0.194 0.806 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.137 0.863 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.033 0.967 48 H 0.042 0.958 49 H 0.196 0.804 50 H 0.052 0.948 51 H 0.101 0.899 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.175 -4.628 -23.576 26.091 hybrid contribution 1.668 -0.797 1.486 2.372 sum -8.507 -5.425 -22.090 24.285 Atomic orbital electron populations 1.21750 0.93223 1.01968 1.02489 1.21123 0.96893 0.99108 0.93648 0.91109 1.21920 0.94201 1.00624 0.98654 1.22647 0.94617 0.99641 0.87150 1.47710 1.43305 1.35164 1.07341 1.17515 0.79723 0.81774 0.86691 1.91141 1.61112 1.55524 1.30609 1.20766 1.07527 0.99000 0.93102 1.22352 1.00996 1.01481 0.87058 1.45448 1.37724 1.23522 1.06317 1.24577 0.95602 0.87054 0.98400 1.69993 1.22928 1.28190 0.98783 1.20508 1.01605 1.02898 0.82035 1.21712 0.97013 0.94060 1.03256 1.21920 1.04965 0.98439 0.91001 1.22505 0.94359 0.91368 0.95017 1.21292 0.95221 0.96025 0.83300 0.92791 1.20919 0.84448 0.96999 0.93766 1.42353 1.03086 1.60220 1.28766 1.19565 0.90971 1.22560 1.00996 0.91818 1.25407 0.97184 1.03201 1.01929 1.69874 1.06931 1.47510 1.38739 0.85082 0.78383 0.77434 0.79059 1.19415 1.22520 1.21964 1.21817 0.91903 1.01380 0.99745 0.92863 0.92198 0.91236 0.88748 0.92744 0.93379 0.84554 0.80562 0.88212 0.87152 0.86853 0.91927 0.90112 0.86345 0.89107 0.87744 0.96662 0.95846 0.80444 0.94779 0.89870 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 2 C -0.09 -2.10 2.68 -10.77 -0.03 -2.13 16 3 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.12 -2.80 5.36 30.67 0.16 -2.64 16 5 C 0.08 2.57 6.11 86.36 0.53 3.10 16 6 N -0.60 -24.00 2.98 -799.78 -2.38 -26.39 16 7 C 0.56 25.91 7.01 86.63 0.61 26.51 16 8 O -0.51 -28.26 10.67 -4.11 -0.04 -28.31 16 9 C -0.08 -3.07 6.67 40.51 0.27 -2.80 16 10 C 0.02 0.75 11.33 83.84 0.95 1.70 16 11 N -0.45 -11.57 3.11 -512.83 -1.60 -13.17 16 12 C 0.21 5.35 7.64 138.05 1.05 6.41 16 13 N -0.48 -16.04 7.76 -176.08 -1.37 -17.40 16 14 C -0.03 -0.45 6.33 30.11 0.19 -0.26 16 15 C -0.12 -1.07 5.95 30.77 0.18 -0.88 16 16 C -0.13 -0.99 5.93 30.71 0.18 -0.81 16 17 C 0.09 1.32 6.95 86.43 0.60 1.92 16 18 C 0.15 5.78 2.92 44.83 0.13 5.91 16 19 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 20 C 0.17 8.11 4.86 86.38 0.42 8.53 16 21 N -0.70 -42.04 3.21 -343.45 -1.10 -43.14 16 22 C -0.21 -13.32 9.71 84.04 0.82 -12.50 16 23 H 0.06 3.99 7.83 -2.91 -0.02 3.96 16 24 C -0.09 -5.59 5.50 84.86 0.47 -5.12 16 25 N -0.98 -66.64 13.06 21.65 0.28 -66.35 16 26 Si 0.97 51.45 29.55 68.60 2.03 53.48 16 27 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 28 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 29 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 30 C -0.11 -3.26 4.62 30.53 0.14 -3.12 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.14 4.42 4.09 -22.27 -0.09 4.33 16 38 H 0.18 6.38 8.06 -2.91 -0.02 6.35 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 43 H 0.08 0.62 8.11 -2.39 -0.02 0.60 16 44 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.02 0.75 8.13 -2.38 -0.02 0.73 16 48 H 0.02 1.26 6.35 -2.39 -0.02 1.24 16 49 H 0.36 23.56 6.99 -92.71 -0.65 22.91 16 50 H 0.24 16.00 8.31 -92.70 -0.77 15.23 16 51 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -87.62 396.69 3.34 -84.29 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.18 Total: 34.97 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 7.34 Total: 22.02 kcal Atomic # 7 Polarization: -160.28 SS G_CDS: -6.17 Total: -166.45 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.04 Total: -28.31 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.03 Total: 53.48 kcal Total: -87.62 3.34 -84.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263992051.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.748 kcal (2) G-P(sol) polarization free energy of solvation -87.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds