Wall clock time and date at job start Wed Apr 1 2020 04:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46093 * 2 1 4 4 C 1.53045 * 109.46018 * 240.02795 * 2 1 3 5 5 C 1.53193 * 109.31033 * 178.61500 * 4 2 1 6 6 N 1.46923 * 108.77690 * 54.63292 * 5 4 2 7 7 C 1.34775 * 120.62943 * 126.36676 * 6 5 4 8 8 O 1.21515 * 120.00318 * 173.59314 * 7 6 5 9 9 C 1.48161 * 120.00393 * 353.59723 * 7 6 5 10 10 C 1.40024 * 120.87738 * 328.13453 * 9 7 6 11 11 C 1.37948 * 119.16993 * 179.72561 * 10 9 7 12 12 N 1.31916 * 121.00366 * 0.55835 * 11 10 9 13 13 C 1.32315 * 121.94681 * 359.71659 * 12 11 10 14 14 N 1.39028 * 119.64420 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00038 * 190.58593 * 14 13 12 16 16 C 1.46495 * 120.00235 * 10.59339 * 14 13 12 17 17 C 1.39118 * 120.71156 * 359.97438 * 13 12 11 18 18 C 1.46928 * 118.74041 * 306.39020 * 6 5 4 19 19 H 1.08994 * 109.58605 * 293.82326 * 18 6 5 20 20 C 1.53003 * 109.58691 * 173.53953 * 18 6 5 21 21 N 1.46503 * 109.46954 * 78.40440 * 20 18 6 22 22 C 1.36937 * 119.99392 * 184.96701 * 21 20 18 23 23 H 1.08003 * 120.00347 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99859 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99706 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00254 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46911 * 90.00754 * 26 24 22 28 28 H 1.48507 * 109.47107 * 210.00030 * 26 24 22 29 29 H 1.48491 * 109.47330 * 330.00422 * 26 24 22 30 30 C 1.53037 * 109.46200 * 119.96954 * 2 1 3 31 31 H 1.08997 * 109.47294 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47032 * 60.00193 * 1 2 3 33 33 H 1.09006 * 109.47332 * 300.00037 * 1 2 3 34 34 H 1.09001 * 109.49167 * 298.56320 * 4 2 1 35 35 H 1.08999 * 109.49704 * 58.63274 * 4 2 1 36 36 H 1.09004 * 109.58346 * 174.42040 * 5 4 2 37 37 H 1.09004 * 109.58625 * 294.84184 * 5 4 2 38 38 H 1.07999 * 120.40976 * 359.97438 * 10 9 7 39 39 H 1.08008 * 119.49571 * 180.27407 * 11 10 9 40 40 H 1.09004 * 109.46883 * 5.30050 * 15 14 13 41 41 H 1.08998 * 109.46900 * 125.30083 * 15 14 13 42 42 H 1.08995 * 109.47045 * 245.30773 * 15 14 13 43 43 H 1.08999 * 109.47801 * 89.99787 * 16 14 13 44 44 H 1.08999 * 109.47000 * 210.00286 * 16 14 13 45 45 H 1.09011 * 109.46855 * 329.99367 * 16 14 13 46 46 H 1.07998 * 120.53764 * 179.97438 * 17 13 12 47 47 H 1.09000 * 109.46776 * 198.40404 * 20 18 6 48 48 H 1.09000 * 109.46866 * 318.40506 * 20 18 6 49 49 H 0.96996 * 119.99804 * 4.96696 * 21 20 18 50 50 H 0.97005 * 119.99643 * 179.97438 * 25 24 22 51 51 H 1.08997 * 109.49718 * 301.34019 * 30 2 1 52 52 H 1.09002 * 109.49537 * 61.43448 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0678 -1.2487 0.0002 7 6 4.9614 -2.2577 0.0003 8 8 5.4523 -2.6345 1.0461 9 6 5.3452 -2.9076 -1.2747 10 6 4.4307 -3.0169 -2.3294 11 6 4.8274 -3.6237 -3.5030 12 7 6.0466 -4.1088 -3.6388 13 6 6.9423 -4.0333 -2.6679 14 7 8.2136 -4.5612 -2.8627 15 6 9.1333 -4.6933 -1.7299 16 6 8.6338 -4.9851 -4.2005 17 6 6.6256 -3.4314 -1.4543 18 6 3.5713 -0.6883 1.2644 19 1 3.9142 0.3411 1.3673 20 6 4.0941 -1.5226 2.4356 21 7 5.4873 -1.1614 2.7089 22 6 6.2009 -1.8513 3.6524 23 1 5.7367 -2.6618 4.1946 24 6 7.5212 -1.5095 3.9110 25 7 8.0870 -0.5220 3.2498 26 14 8.4944 -2.4500 5.1985 27 1 9.1785 -3.6019 4.5580 28 1 9.5063 -1.5505 5.8089 29 1 7.5725 -2.9451 6.2520 30 6 2.0399 -0.7208 1.2500 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.6978 -1.7558 -1.2380 35 1 1.6568 -0.2213 -2.1398 36 1 3.9417 -1.2848 -2.0983 37 1 3.9143 0.3408 -1.3674 38 1 3.4287 -2.6275 -2.2266 39 1 4.1276 -3.7069 -4.3216 40 1 8.6182 -4.4179 -0.8096 41 1 9.4767 -5.7254 -1.6593 42 1 9.9892 -4.0349 -1.8781 43 1 9.1013 -4.1469 -4.7172 44 1 9.3486 -5.8034 -4.1146 45 1 7.7638 -5.3205 -4.7653 46 1 7.3588 -3.3717 -0.6636 47 1 3.4878 -1.3270 3.3201 48 1 4.0361 -2.5811 2.1821 49 1 5.9042 -0.4337 2.2216 50 1 9.0095 -0.2829 3.4308 51 1 1.6572 -0.2209 2.1398 52 1 1.6978 -1.7557 1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264004032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:54 Heat of formation + Delta-G solvation = 83.111311 kcal Electronic energy + Delta-G solvation = -32212.889354 eV Core-core repulsion = 28215.365213 eV Total energy + Delta-G solvation = -3997.524141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.81726 -39.60816 -37.32492 -36.51945 -34.60913 -33.79198 -32.56722 -31.56842 -30.39841 -29.73334 -28.45463 -28.08428 -25.55272 -25.23616 -24.17214 -23.29553 -22.57367 -21.84522 -21.17700 -20.05820 -19.05012 -17.45634 -16.76167 -16.62609 -16.06300 -15.77194 -15.56449 -15.26992 -14.94789 -14.55612 -14.50614 -14.22353 -14.00252 -13.70719 -13.53999 -13.39102 -13.26635 -12.94674 -12.78279 -12.68432 -12.55632 -12.26381 -12.14412 -12.12774 -11.85414 -11.72434 -11.59674 -11.38878 -10.99519 -10.84107 -10.70230 -10.66935 -10.49313 -10.26973 -9.87689 -9.77939 -9.55674 -9.51244 -9.41915 -8.66621 -8.47116 -8.03119 -7.50236 -6.53767 -5.51736 -2.72347 1.12657 1.36332 2.89667 3.32801 3.40197 3.56335 3.60644 3.62260 4.07258 4.52493 4.62561 4.71309 4.75264 4.85064 4.86721 4.97510 5.14414 5.17525 5.25254 5.28953 5.32679 5.34594 5.36354 5.49689 5.53973 5.58798 5.59244 5.66653 5.73154 5.76014 5.76900 5.82075 5.82548 5.90168 5.90837 5.94780 6.07424 6.11417 6.13599 6.17263 6.36963 6.41345 6.53218 6.55706 6.71459 6.89513 6.94255 7.28918 7.37123 7.89563 7.91498 8.15056 8.66148 8.83256 9.77601 10.37159 10.72364 11.72438 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006274 B = 0.005538 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4461.763972 B = 5054.319423 C = 9133.802419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.077 3.923 6 N -0.603 5.603 7 C 0.520 3.480 8 O -0.433 6.433 9 C -0.027 4.027 10 C -0.226 4.226 11 C 0.138 3.862 12 N -0.539 5.539 13 C 0.399 3.601 14 N -0.619 5.619 15 C 0.088 3.912 16 C 0.101 3.899 17 C -0.183 4.183 18 C 0.143 3.857 19 H 0.069 0.931 20 C 0.156 3.844 21 N -0.701 5.701 22 C -0.197 4.197 23 H 0.064 0.936 24 C -0.024 4.024 25 N -0.941 5.941 26 Si 0.900 3.100 27 H -0.294 1.294 28 H -0.295 1.295 29 H -0.285 1.285 30 C -0.121 4.121 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.146 0.854 47 H 0.010 0.990 48 H 0.048 0.952 49 H 0.379 0.621 50 H 0.249 0.751 51 H 0.073 0.927 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -3.160 -17.240 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.046 4.046 6 N -0.340 5.340 7 C 0.305 3.695 8 O -0.301 6.301 9 C -0.039 4.039 10 C -0.249 4.249 11 C -0.018 4.018 12 N -0.257 5.257 13 C 0.166 3.834 14 N -0.334 5.334 15 C -0.055 4.055 16 C -0.042 4.042 17 C -0.208 4.208 18 C 0.040 3.960 19 H 0.087 0.913 20 C 0.029 3.971 21 N -0.343 5.343 22 C -0.329 4.329 23 H 0.082 0.918 24 C -0.218 4.218 25 N -0.593 5.593 26 Si 0.733 3.267 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.211 1.211 30 C -0.160 4.160 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.164 0.836 47 H 0.028 0.972 48 H 0.065 0.935 49 H 0.212 0.788 50 H 0.059 0.941 51 H 0.092 0.908 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.866 -3.980 -17.258 20.274 hybrid contribution 0.572 0.209 1.151 1.302 sum -9.294 -3.771 -16.108 18.975 Atomic orbital electron populations 1.21815 0.95261 1.01675 1.01465 1.21114 0.95352 0.99682 0.94905 0.91088 1.21984 0.95463 1.01172 0.98088 1.22437 0.94003 1.00070 0.88091 1.47711 1.44269 1.35713 1.06351 1.18304 0.80767 0.81893 0.88568 1.91240 1.48752 1.60534 1.29616 1.20377 0.93636 0.95600 0.94241 1.22250 1.01631 1.06357 0.94667 1.22273 0.91343 0.91962 0.96265 1.66950 1.03102 1.23274 1.32420 1.18198 0.85859 0.90040 0.89350 1.46155 1.10915 1.67189 1.09096 1.21834 0.93108 1.01363 0.89152 1.21513 1.00627 0.98832 0.83230 1.21653 0.98025 1.02802 0.98349 1.21516 0.92340 0.98166 0.83941 0.91293 1.20962 0.87374 0.97434 0.91350 1.42172 1.07400 1.39261 1.45481 1.19121 0.93356 1.10103 1.10320 0.91828 1.24584 0.96996 0.99523 1.00706 1.69664 1.12866 1.31648 1.45088 0.86262 0.80066 0.78977 0.81439 1.22253 1.22213 1.21124 1.21980 0.95148 1.01131 0.97695 0.92794 0.92914 0.92683 0.91542 0.91054 0.87191 0.92028 0.83570 0.82714 0.89589 0.92115 0.92321 0.93724 0.92061 0.90278 0.83606 0.97215 0.93481 0.78817 0.94145 0.90791 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.19 37.16 0.34 -0.88 16 2 C -0.09 -0.93 2.68 -90.58 -0.24 -1.18 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.20 5.01 -26.61 -0.13 -1.34 16 5 C 0.08 0.90 5.56 -3.71 -0.02 0.88 16 6 N -0.60 -9.63 2.97 -166.21 -0.49 -10.12 16 7 C 0.52 9.88 7.20 -12.19 -0.09 9.79 16 8 O -0.43 -10.35 10.67 5.35 0.06 -10.29 16 9 C -0.03 -0.44 5.50 -104.68 -0.58 -1.02 16 10 C -0.23 -2.84 7.55 -39.02 -0.29 -3.13 16 11 C 0.14 1.63 11.16 -17.62 -0.20 1.43 16 12 N -0.54 -7.57 9.04 -12.48 -0.11 -7.68 16 13 C 0.40 6.06 7.34 -155.07 -1.14 4.92 16 14 N -0.62 -8.19 3.39 -189.69 -0.64 -8.83 16 15 C 0.09 1.06 10.54 59.85 0.63 1.69 16 16 C 0.10 1.05 10.59 59.84 0.63 1.68 16 17 C -0.18 -3.09 8.83 -38.78 -0.34 -3.44 16 18 C 0.14 2.41 2.93 -67.60 -0.20 2.21 16 19 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 20 C 0.16 3.37 4.94 -4.04 -0.02 3.35 16 21 N -0.70 -18.70 3.63 -59.90 -0.22 -18.92 16 22 C -0.20 -5.82 9.35 -15.06 -0.14 -5.97 16 23 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 25 N -0.94 -29.77 13.06 55.49 0.72 -29.04 16 26 Si 0.90 23.71 29.55 -169.99 -5.02 18.69 16 27 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 28 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 30 C -0.12 -1.54 4.58 -26.61 -0.12 -1.66 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.11 1.21 3.42 -51.96 -0.18 1.03 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.15 1.50 4.99 -52.49 -0.26 1.24 16 39 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.09 1.18 5.49 -51.93 -0.28 0.90 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 45 H 0.08 0.85 7.24 -51.92 -0.38 0.48 16 46 H 0.15 2.72 5.91 -52.49 -0.31 2.41 16 47 H 0.01 0.22 8.02 -51.93 -0.42 -0.19 16 48 H 0.05 1.10 5.96 -51.93 -0.31 0.79 16 49 H 0.38 10.79 7.61 -40.82 -0.31 10.48 16 50 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 51 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 52 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -35.39 398.30 -10.01 -45.40 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.30 Total: 8.28 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.00 Total: 6.52 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -0.74 Total: -74.59 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.06 Total: -10.29 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.69 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.39 -10.01 -45.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264004032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.510 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds