Wall clock time and date at job start Wed Apr 1 2020 04:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46093 * 2 1 4 4 C 1.53045 * 109.46018 * 240.02795 * 2 1 3 5 5 C 1.53193 * 109.31033 * 178.61500 * 4 2 1 6 6 N 1.46923 * 108.77690 * 54.63292 * 5 4 2 7 7 C 1.34775 * 120.62943 * 126.36676 * 6 5 4 8 8 O 1.21515 * 120.00318 * 173.59314 * 7 6 5 9 9 C 1.48161 * 120.00393 * 353.59723 * 7 6 5 10 10 C 1.40024 * 120.87738 * 328.13453 * 9 7 6 11 11 C 1.37948 * 119.16993 * 179.72561 * 10 9 7 12 12 N 1.31916 * 121.00366 * 0.55835 * 11 10 9 13 13 C 1.32315 * 121.94681 * 359.71659 * 12 11 10 14 14 N 1.39028 * 119.64420 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00038 * 190.58593 * 14 13 12 16 16 C 1.46495 * 120.00235 * 10.59339 * 14 13 12 17 17 C 1.39118 * 120.71156 * 359.97438 * 13 12 11 18 18 C 1.46928 * 118.74041 * 306.39020 * 6 5 4 19 19 H 1.08994 * 109.58605 * 293.82326 * 18 6 5 20 20 C 1.53003 * 109.58691 * 173.53953 * 18 6 5 21 21 N 1.46503 * 109.46954 * 78.40440 * 20 18 6 22 22 C 1.36937 * 119.99392 * 184.96701 * 21 20 18 23 23 H 1.08003 * 120.00347 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99859 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99706 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00254 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46911 * 90.00754 * 26 24 22 28 28 H 1.48507 * 109.47107 * 210.00030 * 26 24 22 29 29 H 1.48491 * 109.47330 * 330.00422 * 26 24 22 30 30 C 1.53037 * 109.46200 * 119.96954 * 2 1 3 31 31 H 1.08997 * 109.47294 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47032 * 60.00193 * 1 2 3 33 33 H 1.09006 * 109.47332 * 300.00037 * 1 2 3 34 34 H 1.09001 * 109.49167 * 298.56320 * 4 2 1 35 35 H 1.08999 * 109.49704 * 58.63274 * 4 2 1 36 36 H 1.09004 * 109.58346 * 174.42040 * 5 4 2 37 37 H 1.09004 * 109.58625 * 294.84184 * 5 4 2 38 38 H 1.07999 * 120.40976 * 359.97438 * 10 9 7 39 39 H 1.08008 * 119.49571 * 180.27407 * 11 10 9 40 40 H 1.09004 * 109.46883 * 5.30050 * 15 14 13 41 41 H 1.08998 * 109.46900 * 125.30083 * 15 14 13 42 42 H 1.08995 * 109.47045 * 245.30773 * 15 14 13 43 43 H 1.08999 * 109.47801 * 89.99787 * 16 14 13 44 44 H 1.08999 * 109.47000 * 210.00286 * 16 14 13 45 45 H 1.09011 * 109.46855 * 329.99367 * 16 14 13 46 46 H 1.07998 * 120.53764 * 179.97438 * 17 13 12 47 47 H 1.09000 * 109.46776 * 198.40404 * 20 18 6 48 48 H 1.09000 * 109.46866 * 318.40506 * 20 18 6 49 49 H 0.96996 * 119.99804 * 4.96696 * 21 20 18 50 50 H 0.97005 * 119.99643 * 179.97438 * 25 24 22 51 51 H 1.08997 * 109.49718 * 301.34019 * 30 2 1 52 52 H 1.09002 * 109.49537 * 61.43448 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0678 -1.2487 0.0002 7 6 4.9614 -2.2577 0.0003 8 8 5.4523 -2.6345 1.0461 9 6 5.3452 -2.9076 -1.2747 10 6 4.4307 -3.0169 -2.3294 11 6 4.8274 -3.6237 -3.5030 12 7 6.0466 -4.1088 -3.6388 13 6 6.9423 -4.0333 -2.6679 14 7 8.2136 -4.5612 -2.8627 15 6 9.1333 -4.6933 -1.7299 16 6 8.6338 -4.9851 -4.2005 17 6 6.6256 -3.4314 -1.4543 18 6 3.5713 -0.6883 1.2644 19 1 3.9142 0.3411 1.3673 20 6 4.0941 -1.5226 2.4356 21 7 5.4873 -1.1614 2.7089 22 6 6.2009 -1.8513 3.6524 23 1 5.7367 -2.6618 4.1946 24 6 7.5212 -1.5095 3.9110 25 7 8.0870 -0.5220 3.2498 26 14 8.4944 -2.4500 5.1985 27 1 9.1785 -3.6019 4.5580 28 1 9.5063 -1.5505 5.8089 29 1 7.5725 -2.9451 6.2520 30 6 2.0399 -0.7208 1.2500 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.6978 -1.7558 -1.2380 35 1 1.6568 -0.2213 -2.1398 36 1 3.9417 -1.2848 -2.0983 37 1 3.9143 0.3408 -1.3674 38 1 3.4287 -2.6275 -2.2266 39 1 4.1276 -3.7069 -4.3216 40 1 8.6182 -4.4179 -0.8096 41 1 9.4767 -5.7254 -1.6593 42 1 9.9892 -4.0349 -1.8781 43 1 9.1013 -4.1469 -4.7172 44 1 9.3486 -5.8034 -4.1146 45 1 7.7638 -5.3205 -4.7653 46 1 7.3588 -3.3717 -0.6636 47 1 3.4878 -1.3270 3.3201 48 1 4.0361 -2.5811 2.1821 49 1 5.9042 -0.4337 2.2216 50 1 9.0095 -0.2829 3.4308 51 1 1.6572 -0.2209 2.1398 52 1 1.6978 -1.7557 1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264004032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:53 Heat of formation + Delta-G solvation = 60.648553 kcal Electronic energy + Delta-G solvation = -32213.863412 eV Core-core repulsion = 28215.365213 eV Total energy + Delta-G solvation = -3998.498199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.05482 -40.79437 -38.54960 -37.58697 -36.42641 -34.94489 -34.17038 -32.96824 -31.79316 -31.15635 -29.47295 -29.05422 -27.16766 -26.36858 -25.42084 -24.44476 -24.23711 -22.96731 -22.52095 -21.12049 -20.27970 -19.10898 -18.38043 -17.81766 -17.18104 -17.00140 -16.83295 -16.68860 -16.27558 -15.96541 -15.61509 -15.38361 -15.29219 -15.05860 -14.82011 -14.74340 -14.52031 -14.34925 -14.09555 -13.90131 -13.79998 -13.41608 -13.22734 -13.10783 -13.01230 -12.83467 -12.82166 -12.67054 -12.53500 -12.44755 -12.14108 -12.04857 -11.84135 -11.66287 -11.38146 -11.25309 -10.95593 -10.79092 -10.72647 -10.60899 -9.95844 -9.44739 -8.71600 -8.53143 -7.84274 -5.04674 -0.08720 0.29109 1.41155 1.44645 1.52226 1.83090 2.04733 2.11049 2.60646 2.91630 3.39725 3.48637 3.59987 3.76941 3.85009 3.91469 3.96128 4.09805 4.10955 4.14319 4.29128 4.31213 4.34744 4.44109 4.45768 4.48128 4.57020 4.68288 4.71680 4.74192 4.79115 4.80806 4.84559 4.87394 4.94859 4.95845 5.00542 5.07216 5.13895 5.16344 5.21394 5.27456 5.34258 5.46562 5.51734 5.52422 5.60281 5.82868 5.92230 6.31950 6.36758 6.56051 7.07221 7.38885 7.44646 8.21178 8.44999 9.40758 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006274 B = 0.005538 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4461.763972 B = 5054.319423 C = 9133.802419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.121 4.121 5 C 0.070 3.930 6 N -0.598 5.598 7 C 0.515 3.485 8 O -0.501 6.501 9 C -0.043 4.043 10 C -0.213 4.213 11 C 0.152 3.848 12 N -0.541 5.541 13 C 0.393 3.607 14 N -0.624 5.624 15 C 0.088 3.912 16 C 0.100 3.900 17 C -0.214 4.214 18 C 0.149 3.851 19 H 0.056 0.944 20 C 0.159 3.841 21 N -0.708 5.708 22 C -0.199 4.199 23 H 0.058 0.942 24 C -0.086 4.086 25 N -0.976 5.976 26 Si 0.964 3.036 27 H -0.295 1.295 28 H -0.294 1.294 29 H -0.273 1.273 30 C -0.111 4.111 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.177 0.823 39 H 0.206 0.794 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.010 0.990 48 H 0.030 0.970 49 H 0.365 0.635 50 H 0.244 0.756 51 H 0.078 0.922 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 -3.553 -20.268 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.051 4.051 6 N -0.333 5.333 7 C 0.302 3.698 8 O -0.374 6.374 9 C -0.054 4.054 10 C -0.235 4.235 11 C -0.005 4.005 12 N -0.260 5.260 13 C 0.159 3.841 14 N -0.338 5.338 15 C -0.055 4.055 16 C -0.042 4.042 17 C -0.240 4.240 18 C 0.045 3.955 19 H 0.074 0.926 20 C 0.033 3.967 21 N -0.348 5.348 22 C -0.332 4.332 23 H 0.076 0.924 24 C -0.276 4.276 25 N -0.630 5.630 26 Si 0.795 3.205 27 H -0.223 1.223 28 H -0.220 1.220 29 H -0.198 1.198 30 C -0.150 4.150 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.194 0.806 39 H 0.223 0.777 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.129 0.871 47 H 0.028 0.972 48 H 0.047 0.953 49 H 0.196 0.804 50 H 0.053 0.947 51 H 0.096 0.904 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.483 -4.375 -20.326 24.251 hybrid contribution 1.297 0.312 1.971 2.380 sum -11.186 -4.063 -18.355 21.876 Atomic orbital electron populations 1.21757 0.93303 1.02190 1.02386 1.21107 0.96832 0.99210 0.93599 0.91163 1.21985 0.92812 1.02028 0.99032 1.22777 0.96187 1.00048 0.86094 1.47849 1.43156 1.34592 1.07722 1.18873 0.80166 0.81874 0.88898 1.91197 1.51218 1.62976 1.32041 1.20280 0.94455 0.96429 0.94249 1.22493 1.01908 1.05667 0.93472 1.23116 0.91033 0.89395 0.96962 1.67121 1.03794 1.23474 1.31586 1.18261 0.86957 0.90000 0.88849 1.46417 1.10456 1.66648 1.10324 1.21851 0.92808 1.02817 0.87992 1.21664 1.01094 0.99776 0.81632 1.21491 0.98214 1.05471 0.98824 1.21377 0.95167 0.96125 0.82808 0.92575 1.20994 0.84985 0.97337 0.93413 1.42243 1.09095 1.38587 1.44867 1.19395 0.93927 1.09556 1.10289 0.92371 1.25337 0.98023 1.00931 1.03339 1.69828 1.12775 1.33424 1.46993 0.85238 0.78579 0.77497 0.79186 1.22289 1.22029 1.19774 1.21924 0.91382 1.01764 0.99902 0.92466 0.91071 0.92792 0.90809 0.87527 0.85990 0.91810 0.80624 0.77739 0.92413 0.89897 0.91490 0.93184 0.89785 0.90390 0.87063 0.97213 0.95256 0.80416 0.94718 0.90368 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.09 -1.53 2.68 -10.77 -0.03 -1.56 16 3 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 4 C -0.12 -1.75 5.01 30.67 0.15 -1.59 16 5 C 0.07 1.48 5.56 86.36 0.48 1.96 16 6 N -0.60 -19.23 2.97 -798.05 -2.37 -21.61 16 7 C 0.52 20.58 7.20 86.88 0.63 21.20 16 8 O -0.50 -25.90 10.67 -3.76 -0.04 -25.94 16 9 C -0.04 -1.43 5.50 -19.90 -0.11 -1.54 16 10 C -0.21 -4.81 7.55 22.63 0.17 -4.64 16 11 C 0.15 3.02 11.16 84.61 0.94 3.97 16 12 N -0.54 -14.05 9.04 -193.40 -1.75 -15.79 16 13 C 0.39 11.98 7.34 133.08 0.98 12.96 16 14 N -0.62 -16.50 3.39 -754.04 -2.56 -19.05 16 15 C 0.09 2.21 10.54 127.77 1.35 3.56 16 16 C 0.10 1.92 10.59 127.77 1.35 3.28 16 17 C -0.21 -7.72 8.83 22.79 0.20 -7.51 16 18 C 0.15 5.11 2.93 44.97 0.13 5.24 16 19 H 0.06 2.08 8.04 -2.39 -0.02 2.06 16 20 C 0.16 7.25 4.94 86.38 0.43 7.68 16 21 N -0.71 -40.15 3.63 -343.44 -1.25 -41.40 16 22 C -0.20 -12.38 9.35 84.03 0.79 -11.60 16 23 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 24 C -0.09 -5.42 5.50 84.86 0.47 -4.95 16 25 N -0.98 -64.78 13.06 21.65 0.28 -64.50 16 26 Si 0.96 50.76 29.55 68.60 2.03 52.79 16 27 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 28 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 29 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 30 C -0.11 -2.70 4.58 30.67 0.14 -2.56 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.07 1.03 7.69 -2.39 -0.02 1.01 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.12 2.30 3.42 -2.42 -0.01 2.29 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.18 2.85 4.99 -2.91 -0.01 2.84 16 39 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.06 1.79 5.49 -2.39 -0.01 1.77 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 45 H 0.08 1.52 7.24 -2.38 -0.02 1.51 16 46 H 0.11 4.71 5.91 -2.91 -0.02 4.70 16 47 H 0.01 0.46 8.02 -2.39 -0.02 0.44 16 48 H 0.03 1.47 5.96 -2.42 -0.01 1.46 16 49 H 0.36 22.22 7.61 -92.71 -0.71 21.51 16 50 H 0.24 15.69 8.31 -92.70 -0.77 14.92 16 51 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -83.86 398.30 3.30 -80.56 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.22 Total: 32.20 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 8.73 Total: 22.74 kcal Atomic # 7 Polarization: -154.71 SS G_CDS: -7.64 Total: -162.35 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.04 Total: -25.94 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.03 Total: 52.79 kcal Total: -83.86 3.30 -80.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264004032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.210 kcal (2) G-P(sol) polarization free energy of solvation -83.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds