Wall clock time and date at job start Wed Apr 1 2020 04:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45514 * 2 1 4 4 C 1.53042 * 109.45818 * 240.03318 * 2 1 3 5 5 C 1.53191 * 109.30993 * 178.61297 * 4 2 1 6 6 N 1.46928 * 108.77715 * 54.63259 * 5 4 2 7 7 C 1.34777 * 120.63183 * 126.37056 * 6 5 4 8 8 O 1.21568 * 119.99906 * 186.74713 * 7 6 5 9 9 C 1.47710 * 119.99751 * 6.74221 * 7 6 5 10 10 N 1.32210 * 126.68139 * 6.20011 * 9 7 6 11 11 N 1.29017 * 110.14014 * 180.02562 * 10 9 7 12 12 H 0.97000 * 124.98974 * 179.97438 * 11 10 9 13 13 C 1.34308 * 110.02420 * 359.86729 * 11 10 9 14 14 C 1.35642 * 107.20357 * 0.16431 * 13 11 10 15 15 C 1.50382 * 124.57671 * 179.80732 * 14 13 11 16 16 C 1.53476 * 108.31543 * 343.74634 * 15 14 13 17 17 C 1.53107 * 109.51053 * 49.48621 * 16 15 14 18 18 C 1.50716 * 128.90279 * 180.21432 * 13 11 10 19 19 C 1.46924 * 118.73564 * 306.64094 * 6 5 4 20 20 H 1.08997 * 109.59202 * 293.56851 * 19 6 5 21 21 C 1.53002 * 109.58198 * 173.14412 * 19 6 5 22 22 N 1.46494 * 109.47237 * 68.55627 * 21 19 6 23 23 C 1.36941 * 120.00391 * 174.65889 * 22 21 19 24 24 H 1.07996 * 119.99533 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00211 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00152 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99979 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46858 * 89.99996 * 27 25 23 29 29 H 1.48494 * 109.46889 * 209.99541 * 27 25 23 30 30 H 1.48499 * 109.47248 * 329.99909 * 27 25 23 31 31 C 1.52762 * 109.01059 * 53.31379 * 19 6 5 32 32 H 1.09006 * 109.47080 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47009 * 299.96797 * 1 2 3 34 34 H 1.08997 * 109.47467 * 59.97105 * 1 2 3 35 35 H 1.08998 * 109.49982 * 58.65760 * 4 2 1 36 36 H 1.09000 * 109.52183 * 298.57303 * 4 2 1 37 37 H 1.08997 * 109.58559 * 294.84250 * 5 4 2 38 38 H 1.09002 * 109.70260 * 174.48737 * 5 4 2 39 39 H 1.09001 * 109.69808 * 224.03626 * 15 14 13 40 40 H 1.08998 * 109.69959 * 103.46813 * 15 14 13 41 41 H 1.08995 * 109.46114 * 169.49634 * 16 15 14 42 42 H 1.08997 * 109.46763 * 289.48589 * 16 15 14 43 43 H 1.08998 * 109.44135 * 50.01192 * 17 16 15 44 44 H 1.09000 * 109.44066 * 169.94050 * 17 16 15 45 45 H 1.08998 * 109.69240 * 43.58849 * 18 13 11 46 46 H 1.09004 * 109.69286 * 283.00636 * 18 13 11 47 47 H 1.09003 * 109.46762 * 188.55306 * 21 19 6 48 48 H 1.08995 * 109.47495 * 308.55064 * 21 19 6 49 49 H 0.97006 * 120.00375 * 354.65508 * 22 21 19 50 50 H 0.96995 * 120.00378 * 179.97438 * 26 25 23 51 51 H 1.08997 * 109.56564 * 185.55229 * 31 19 6 52 52 H 1.09001 * 109.38719 * 65.50760 * 31 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2487 0.0000 7 6 4.9615 -2.2576 0.0001 8 8 5.2721 -2.7945 1.0457 9 6 5.5634 -2.7112 -1.2703 10 7 5.4113 -2.1539 -2.4595 11 7 6.0790 -2.8110 -3.3467 12 1 6.1184 -2.5894 -4.2902 13 6 6.7135 -3.8457 -2.7716 14 6 6.4094 -3.8184 -1.4500 15 6 6.9130 -4.8099 -0.4377 16 6 7.4533 -6.0342 -1.1891 17 6 8.4056 -5.5751 -2.2967 18 6 7.6082 -4.8788 -3.4069 19 6 3.5672 -0.6921 1.2642 20 1 3.9097 0.3371 1.3715 21 6 4.0831 -1.5320 2.4344 22 7 5.5309 -1.3502 2.5651 23 6 6.2005 -1.9196 3.6151 24 1 5.6613 -2.5030 4.3467 25 6 7.5724 -1.7477 3.7386 26 7 8.2159 -2.2945 4.7482 27 14 8.5050 -0.7391 2.4728 28 1 8.5389 0.6827 2.9001 29 1 9.8930 -1.2537 2.3550 30 1 7.8247 -0.8445 1.1570 31 6 2.0399 -0.7206 1.2502 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5133 0.8903 34 1 -0.3634 0.5143 -0.8897 35 1 1.6571 -0.2208 -2.1399 36 1 1.6979 -1.7557 -1.2388 37 1 3.9142 0.3409 -1.3675 38 1 3.9437 -1.2831 -2.0985 39 1 6.0965 -5.1122 0.2182 40 1 7.7109 -4.3593 0.1526 41 1 7.9895 -6.6797 -0.4936 42 1 6.6228 -6.5855 -1.6299 43 1 9.1348 -4.8788 -1.8826 44 1 8.9241 -6.4398 -2.7108 45 1 8.2933 -4.3937 -4.1022 46 1 7.0023 -5.6122 -3.9390 47 1 3.5925 -1.2137 3.3542 48 1 3.8641 -2.5839 2.2511 49 1 6.0153 -0.8265 1.9077 50 1 9.1746 -2.1748 4.8343 51 1 1.6573 -0.2205 2.1398 52 1 1.6974 -1.7553 1.2387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264554664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:30 Heat of formation + Delta-G solvation = 84.850296 kcal Electronic energy + Delta-G solvation = -33012.230297 eV Core-core repulsion = 29014.781564 eV Total energy + Delta-G solvation = -3997.448733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.71069 -39.97880 -37.26787 -36.84564 -34.63976 -33.63444 -32.53300 -31.73095 -30.18292 -29.85680 -29.46916 -28.16981 -25.63428 -24.06159 -23.74014 -23.01544 -22.26654 -22.01794 -20.95221 -19.94034 -18.96008 -18.66126 -17.70746 -17.29245 -16.27189 -15.91464 -15.43966 -14.92664 -14.57590 -14.36103 -14.25931 -14.01704 -13.82201 -13.74518 -13.67474 -13.45551 -13.17643 -12.98945 -12.94080 -12.72761 -12.47839 -12.16011 -12.04128 -11.90090 -11.74417 -11.58855 -11.25262 -10.96404 -10.90535 -10.84829 -10.73090 -10.71678 -10.62031 -10.50276 -10.11744 -9.94193 -9.78909 -9.33671 -9.13791 -8.70421 -8.49374 -8.42346 -8.04878 -6.73119 -5.50517 -2.75831 1.78926 2.30391 2.84108 3.44390 3.52824 3.59134 3.60404 3.94886 4.44899 4.60760 4.74320 4.80132 4.83260 4.83616 4.85006 4.94049 5.20312 5.21053 5.30294 5.34093 5.41954 5.48219 5.55053 5.57342 5.60492 5.60929 5.63430 5.72662 5.78962 5.82793 5.88260 5.96322 5.98466 6.06156 6.07069 6.09747 6.15795 6.17802 6.21989 6.24385 6.30498 6.46669 6.48398 6.50959 6.69028 6.80637 6.94018 7.12431 7.32687 7.89110 8.06691 8.25849 8.67971 8.91348 9.49378 10.23126 10.44155 11.69471 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007306 B = 0.006089 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3831.691376 B = 4597.592617 C = 7485.061058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.089 3.911 6 N -0.606 5.606 7 C 0.554 3.446 8 O -0.435 6.435 9 C 0.017 3.983 10 N -0.277 5.277 11 N -0.387 5.387 12 H 0.439 0.561 13 C 0.005 3.995 14 C -0.139 4.139 15 C -0.045 4.045 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.044 4.044 19 C 0.139 3.861 20 H 0.067 0.933 21 C 0.164 3.836 22 N -0.722 5.722 23 C -0.204 4.204 24 H 0.087 0.913 25 C -0.002 4.002 26 N -0.944 5.944 27 Si 0.878 3.122 28 H -0.291 1.291 29 H -0.295 1.295 30 H -0.280 1.280 31 C -0.120 4.120 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.024 0.976 48 H 0.050 0.950 49 H 0.356 0.644 50 H 0.254 0.746 51 H 0.074 0.926 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.725 -1.817 -21.589 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.164 4.164 5 C -0.035 4.035 6 N -0.343 5.343 7 C 0.338 3.662 8 O -0.301 6.301 9 C -0.142 4.142 10 N -0.113 5.113 11 N -0.098 5.098 12 H 0.282 0.718 13 C -0.122 4.122 14 C -0.149 4.149 15 C -0.083 4.083 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.083 4.083 19 C 0.036 3.964 20 H 0.085 0.915 21 C 0.037 3.963 22 N -0.367 5.367 23 C -0.335 4.335 24 H 0.105 0.895 25 C -0.196 4.196 26 N -0.595 5.595 27 Si 0.710 3.290 28 H -0.218 1.218 29 H -0.222 1.222 30 H -0.206 1.206 31 C -0.159 4.159 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.042 0.958 48 H 0.067 0.933 49 H 0.188 0.812 50 H 0.064 0.936 51 H 0.092 0.908 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.025 -1.394 -21.249 23.537 hybrid contribution 1.195 0.524 -1.292 1.836 sum -8.830 -0.870 -22.541 24.225 Atomic orbital electron populations 1.21813 0.95350 1.01653 1.01351 1.21134 0.95304 0.99563 0.95153 0.91267 1.21965 0.96024 1.00863 0.97546 1.22297 0.93204 0.99879 0.88071 1.47676 1.44135 1.36018 1.06513 1.17114 0.80496 0.82404 0.86233 1.91220 1.58612 1.52310 1.27950 1.22049 1.02670 0.97201 0.92316 1.73656 1.17679 1.21257 0.98706 1.43103 1.35500 1.20685 1.10498 0.71817 1.21118 1.02526 0.94706 0.93867 1.19943 1.01923 0.99183 0.93838 1.19997 1.01390 0.92027 0.94855 1.21655 0.98786 0.97826 0.97402 1.21574 0.98084 1.00147 0.95577 1.20193 0.95882 0.94387 0.97831 1.21463 0.92966 0.97835 0.84149 0.91507 1.20890 0.85536 0.97687 0.92141 1.42651 1.02837 1.61758 1.29405 1.19011 0.90710 1.23885 0.99876 0.89541 1.24506 0.96105 1.01198 0.97793 1.69694 1.07896 1.50107 1.31788 0.86593 0.79624 0.80249 0.82491 1.21846 1.22210 1.20649 1.21877 0.94982 1.01343 0.97671 0.92811 0.92707 0.93017 0.91502 0.91889 0.92698 0.85900 0.89639 0.90041 0.91106 0.92025 0.91235 0.91114 0.90660 0.90207 0.95790 0.93266 0.81178 0.93612 0.90765 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.09 -1.03 2.68 -90.58 -0.24 -1.27 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -1.41 5.36 -26.61 -0.14 -1.55 16 5 C 0.09 1.22 6.13 -3.71 -0.02 1.20 16 6 N -0.61 -10.41 2.98 -166.63 -0.50 -10.90 16 7 C 0.55 11.10 7.03 -12.39 -0.09 11.01 16 8 O -0.44 -10.29 9.69 5.31 0.05 -10.24 16 9 C 0.02 0.31 6.82 -82.98 -0.57 -0.26 16 10 N -0.28 -4.06 8.74 33.28 0.29 -3.77 16 11 N -0.39 -4.40 6.83 33.43 0.23 -4.17 16 12 H 0.44 3.08 8.96 -190.11 -1.70 1.38 16 13 C 0.01 0.06 7.12 -82.43 -0.59 -0.52 16 14 C -0.14 -2.28 5.99 -104.85 -0.63 -2.91 16 15 C -0.04 -0.74 5.51 -27.79 -0.15 -0.89 16 16 C -0.12 -1.43 5.91 -26.43 -0.16 -1.58 16 17 C -0.12 -1.15 5.89 -26.47 -0.16 -1.31 16 18 C -0.04 -0.39 6.31 -27.67 -0.17 -0.56 16 19 C 0.14 2.38 2.92 -67.82 -0.20 2.18 16 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 21 C 0.16 3.52 4.86 -4.04 -0.02 3.50 16 22 N -0.72 -18.76 3.02 -59.91 -0.18 -18.94 16 23 C -0.20 -6.19 10.19 -15.06 -0.15 -6.34 16 24 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 25 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 26 N -0.94 -31.35 13.97 55.49 0.78 -30.58 16 27 Si 0.88 24.32 27.74 -169.99 -4.71 19.60 16 28 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 29 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 30 H -0.28 -7.65 6.52 56.52 0.37 -7.28 16 31 C -0.12 -1.60 4.62 -26.83 -0.12 -1.72 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.12 1.70 4.14 -72.23 -0.30 1.40 16 39 H 0.09 1.54 7.80 -51.93 -0.41 1.14 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 43 H 0.07 0.79 8.12 -51.93 -0.42 0.36 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.02 0.51 8.13 -51.93 -0.42 0.09 16 48 H 0.05 1.14 6.35 -51.93 -0.33 0.81 16 49 H 0.36 9.40 4.84 -40.82 -0.20 9.20 16 50 H 0.25 8.07 8.31 -40.82 -0.34 7.73 16 51 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 52 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 390.68 15.07 5.89 5.89 Total: -1.00 -36.78 390.68 -11.46 -48.23 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -10.13 Total: 7.05 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.17 Total: -2.18 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: 0.62 Total: -68.36 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.05 Total: -10.24 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.71 Total: 19.60 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.78 -11.46 -48.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264554664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.084 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds