Wall clock time and date at job start Wed Apr 1 2020 04:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45514 * 2 1 4 4 C 1.53042 * 109.45818 * 240.03318 * 2 1 3 5 5 C 1.53191 * 109.30993 * 178.61297 * 4 2 1 6 6 N 1.46928 * 108.77715 * 54.63259 * 5 4 2 7 7 C 1.34777 * 120.63183 * 126.37056 * 6 5 4 8 8 O 1.21568 * 119.99906 * 186.74713 * 7 6 5 9 9 C 1.47710 * 119.99751 * 6.74221 * 7 6 5 10 10 N 1.32210 * 126.68139 * 6.20011 * 9 7 6 11 11 N 1.29017 * 110.14014 * 180.02562 * 10 9 7 12 12 H 0.97000 * 124.98974 * 179.97438 * 11 10 9 13 13 C 1.34308 * 110.02420 * 359.86729 * 11 10 9 14 14 C 1.35642 * 107.20357 * 0.16431 * 13 11 10 15 15 C 1.50382 * 124.57671 * 179.80732 * 14 13 11 16 16 C 1.53476 * 108.31543 * 343.74634 * 15 14 13 17 17 C 1.53107 * 109.51053 * 49.48621 * 16 15 14 18 18 C 1.50716 * 128.90279 * 180.21432 * 13 11 10 19 19 C 1.46924 * 118.73564 * 306.64094 * 6 5 4 20 20 H 1.08997 * 109.59202 * 293.56851 * 19 6 5 21 21 C 1.53002 * 109.58198 * 173.14412 * 19 6 5 22 22 N 1.46494 * 109.47237 * 68.55627 * 21 19 6 23 23 C 1.36941 * 120.00391 * 174.65889 * 22 21 19 24 24 H 1.07996 * 119.99533 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00211 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00152 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99979 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46858 * 89.99996 * 27 25 23 29 29 H 1.48494 * 109.46889 * 209.99541 * 27 25 23 30 30 H 1.48499 * 109.47248 * 329.99909 * 27 25 23 31 31 C 1.52762 * 109.01059 * 53.31379 * 19 6 5 32 32 H 1.09006 * 109.47080 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47009 * 299.96797 * 1 2 3 34 34 H 1.08997 * 109.47467 * 59.97105 * 1 2 3 35 35 H 1.08998 * 109.49982 * 58.65760 * 4 2 1 36 36 H 1.09000 * 109.52183 * 298.57303 * 4 2 1 37 37 H 1.08997 * 109.58559 * 294.84250 * 5 4 2 38 38 H 1.09002 * 109.70260 * 174.48737 * 5 4 2 39 39 H 1.09001 * 109.69808 * 224.03626 * 15 14 13 40 40 H 1.08998 * 109.69959 * 103.46813 * 15 14 13 41 41 H 1.08995 * 109.46114 * 169.49634 * 16 15 14 42 42 H 1.08997 * 109.46763 * 289.48589 * 16 15 14 43 43 H 1.08998 * 109.44135 * 50.01192 * 17 16 15 44 44 H 1.09000 * 109.44066 * 169.94050 * 17 16 15 45 45 H 1.08998 * 109.69240 * 43.58849 * 18 13 11 46 46 H 1.09004 * 109.69286 * 283.00636 * 18 13 11 47 47 H 1.09003 * 109.46762 * 188.55306 * 21 19 6 48 48 H 1.08995 * 109.47495 * 308.55064 * 21 19 6 49 49 H 0.97006 * 120.00375 * 354.65508 * 22 21 19 50 50 H 0.96995 * 120.00378 * 179.97438 * 26 25 23 51 51 H 1.08997 * 109.56564 * 185.55229 * 31 19 6 52 52 H 1.09001 * 109.38719 * 65.50760 * 31 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2487 0.0000 7 6 4.9615 -2.2576 0.0001 8 8 5.2721 -2.7945 1.0457 9 6 5.5634 -2.7112 -1.2703 10 7 5.4113 -2.1539 -2.4595 11 7 6.0790 -2.8110 -3.3467 12 1 6.1184 -2.5894 -4.2902 13 6 6.7135 -3.8457 -2.7716 14 6 6.4094 -3.8184 -1.4500 15 6 6.9130 -4.8099 -0.4377 16 6 7.4533 -6.0342 -1.1891 17 6 8.4056 -5.5751 -2.2967 18 6 7.6082 -4.8788 -3.4069 19 6 3.5672 -0.6921 1.2642 20 1 3.9097 0.3371 1.3715 21 6 4.0831 -1.5320 2.4344 22 7 5.5309 -1.3502 2.5651 23 6 6.2005 -1.9196 3.6151 24 1 5.6613 -2.5030 4.3467 25 6 7.5724 -1.7477 3.7386 26 7 8.2159 -2.2945 4.7482 27 14 8.5050 -0.7391 2.4728 28 1 8.5389 0.6827 2.9001 29 1 9.8930 -1.2537 2.3550 30 1 7.8247 -0.8445 1.1570 31 6 2.0399 -0.7206 1.2502 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5133 0.8903 34 1 -0.3634 0.5143 -0.8897 35 1 1.6571 -0.2208 -2.1399 36 1 1.6979 -1.7557 -1.2388 37 1 3.9142 0.3409 -1.3675 38 1 3.9437 -1.2831 -2.0985 39 1 6.0965 -5.1122 0.2182 40 1 7.7109 -4.3593 0.1526 41 1 7.9895 -6.6797 -0.4936 42 1 6.6228 -6.5855 -1.6299 43 1 9.1348 -4.8788 -1.8826 44 1 8.9241 -6.4398 -2.7108 45 1 8.2933 -4.3937 -4.1022 46 1 7.0023 -5.6122 -3.9390 47 1 3.5925 -1.2137 3.3542 48 1 3.8641 -2.5839 2.2511 49 1 6.0153 -0.8265 1.9077 50 1 9.1746 -2.1748 4.8343 51 1 1.6573 -0.2205 2.1398 52 1 1.6974 -1.7553 1.2387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264554664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:29 Heat of formation + Delta-G solvation = 60.310420 kcal Electronic energy + Delta-G solvation = -33013.294426 eV Core-core repulsion = 29014.781564 eV Total energy + Delta-G solvation = -3998.512862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.83683 -41.37601 -38.54973 -37.82174 -36.56668 -34.85393 -34.13876 -33.24148 -31.99909 -30.92395 -30.50686 -29.26189 -27.33266 -25.38820 -24.76656 -24.10175 -24.05597 -23.17981 -22.40906 -21.05153 -20.15144 -20.02468 -19.31712 -18.77200 -17.58630 -17.07441 -16.79529 -16.66502 -15.97404 -15.73713 -15.46244 -15.41859 -15.17908 -14.82104 -14.78219 -14.74047 -14.69002 -14.41313 -14.15481 -14.03025 -13.82514 -13.65237 -13.52259 -13.05486 -12.97314 -12.87550 -12.70239 -12.56657 -12.26137 -12.14325 -11.97388 -11.81892 -11.76929 -11.72041 -11.61282 -11.51292 -11.27996 -10.98628 -10.89340 -10.30079 -10.08132 -9.63161 -9.51740 -8.89983 -7.96019 -5.17795 0.57453 1.11159 1.25624 1.30461 1.37942 1.82711 2.19994 2.48165 2.50611 3.32995 3.35987 3.59624 3.64406 3.73242 3.88298 3.91598 4.00552 4.03548 4.18904 4.21680 4.26111 4.34011 4.34477 4.40334 4.53075 4.56690 4.64273 4.73634 4.75360 4.78030 4.85497 4.92559 4.96124 4.98248 4.99914 5.06856 5.11000 5.12940 5.15910 5.21497 5.24367 5.30240 5.32535 5.42591 5.44185 5.51946 5.56038 5.78879 5.85009 6.17692 6.27294 6.55866 6.89662 7.15240 7.44597 7.94207 8.12787 9.27698 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007306 B = 0.006089 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3831.691376 B = 4597.592617 C = 7485.061058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.118 4.118 5 C 0.085 3.915 6 N -0.604 5.604 7 C 0.550 3.450 8 O -0.494 6.494 9 C -0.021 4.021 10 N -0.268 5.268 11 N -0.360 5.360 12 H 0.462 0.538 13 C 0.033 3.967 14 C -0.181 4.181 15 C -0.041 4.041 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.040 4.040 19 C 0.143 3.857 20 H 0.070 0.930 21 C 0.166 3.834 22 N -0.722 5.722 23 C -0.189 4.189 24 H 0.051 0.949 25 C -0.067 4.067 26 N -0.990 5.990 27 Si 0.950 3.050 28 H -0.278 1.278 29 H -0.296 1.296 30 H -0.280 1.280 31 C -0.112 4.112 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.025 0.975 48 H 0.028 0.972 49 H 0.354 0.646 50 H 0.253 0.747 51 H 0.086 0.914 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 -0.661 -26.791 28.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.038 4.038 6 N -0.340 5.340 7 C 0.335 3.665 8 O -0.364 6.364 9 C -0.179 4.179 10 N -0.105 5.105 11 N -0.075 5.075 12 H 0.311 0.689 13 C -0.096 4.096 14 C -0.191 4.191 15 C -0.080 4.080 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.079 4.079 19 C 0.040 3.960 20 H 0.088 0.912 21 C 0.040 3.960 22 N -0.365 5.365 23 C -0.321 4.321 24 H 0.069 0.931 25 C -0.257 4.257 26 N -0.644 5.644 27 Si 0.781 3.219 28 H -0.204 1.204 29 H -0.223 1.223 30 H -0.206 1.206 31 C -0.151 4.151 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.187 0.813 50 H 0.062 0.938 51 H 0.104 0.896 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.010 -0.183 -26.526 28.721 hybrid contribution 1.374 0.079 0.241 1.397 sum -9.636 -0.103 -26.285 27.996 Atomic orbital electron populations 1.21759 0.93451 1.01903 1.02513 1.21118 0.96765 0.99353 0.93425 0.90498 1.21930 0.93854 1.00872 0.98933 1.22545 0.95056 0.99952 0.86207 1.47872 1.43181 1.35141 1.07832 1.17624 0.80220 0.81970 0.86683 1.91192 1.60519 1.54612 1.30084 1.21832 1.04702 0.98851 0.92497 1.73566 1.17857 1.21123 0.97981 1.43203 1.33547 1.19443 1.11264 0.68917 1.21576 1.01035 0.94565 0.92395 1.20087 1.03635 0.99653 0.95745 1.19823 0.98877 0.94262 0.94997 1.21632 0.99820 0.95623 0.97976 1.21599 0.97356 1.01188 0.95106 1.20437 0.95917 0.93901 0.97602 1.21392 0.95472 0.96519 0.82598 0.91221 1.20914 0.83213 0.97482 0.94362 1.42572 1.04463 1.61380 1.28103 1.18965 0.90927 1.22343 0.99895 0.93107 1.25185 0.97028 1.03379 1.00131 1.69861 1.08045 1.52461 1.34031 0.85446 0.77749 0.78985 0.79754 1.20425 1.22276 1.20617 1.21839 0.91754 1.01536 0.99965 0.93041 0.92209 0.91251 0.88462 0.92706 0.91803 0.85764 0.93201 0.94436 0.91211 0.90446 0.93130 0.87685 0.87321 0.87026 0.95720 0.95467 0.81349 0.93834 0.89580 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 2 C -0.09 -1.71 2.68 -10.77 -0.03 -1.74 16 3 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.12 -2.30 5.36 30.67 0.16 -2.14 16 5 C 0.08 2.16 6.13 86.36 0.53 2.69 16 6 N -0.60 -20.88 2.98 -799.36 -2.38 -23.26 16 7 C 0.55 23.04 7.03 86.75 0.61 23.65 16 8 O -0.49 -25.26 9.69 -3.93 -0.04 -25.30 16 9 C -0.02 -0.75 6.82 42.14 0.29 -0.46 16 10 N -0.27 -7.35 8.74 -48.62 -0.43 -7.78 16 11 N -0.36 -6.94 6.83 -48.14 -0.33 -7.27 16 12 H 0.46 4.25 8.96 -219.71 -1.97 2.28 16 13 C 0.03 0.74 7.12 41.58 0.30 1.04 16 14 C -0.18 -6.02 5.99 -20.02 -0.12 -6.14 16 15 C -0.04 -1.47 5.51 29.91 0.16 -1.31 16 16 C -0.11 -2.69 5.91 30.79 0.18 -2.51 16 17 C -0.11 -1.97 5.89 30.77 0.18 -1.79 16 18 C -0.04 -0.52 6.31 29.99 0.19 -0.33 16 19 C 0.14 4.95 2.92 44.83 0.13 5.08 16 20 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 21 C 0.17 7.54 4.86 86.38 0.42 7.96 16 22 N -0.72 -39.48 3.02 -343.47 -1.04 -40.52 16 23 C -0.19 -12.22 10.19 84.03 0.86 -11.37 16 24 H 0.05 3.57 8.06 -2.91 -0.02 3.54 16 25 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 26 N -0.99 -69.12 13.97 21.65 0.30 -68.82 16 27 Si 0.95 52.80 27.74 68.60 1.90 54.70 16 28 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16 29 H -0.30 -16.32 7.11 99.48 0.71 -15.61 16 30 H -0.28 -15.33 6.52 99.48 0.65 -14.68 16 31 C -0.11 -2.89 4.62 30.53 0.14 -2.75 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.80 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.13 3.18 4.14 -28.66 -0.12 3.06 16 39 H 0.05 2.05 7.80 -2.39 -0.02 2.03 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 43 H 0.05 1.07 8.12 -2.39 -0.02 1.05 16 44 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.03 1.11 8.13 -2.39 -0.02 1.09 16 48 H 0.03 1.38 6.35 -2.39 -0.02 1.36 16 49 H 0.35 19.37 4.84 -92.70 -0.45 18.92 16 50 H 0.25 16.81 8.31 -92.71 -0.77 16.04 16 51 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -88.68 390.68 1.48 -87.21 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -1.65 Total: 26.57 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.13 Total: 4.48 kcal Atomic # 7 Polarization: -143.78 SS G_CDS: -3.87 Total: -147.65 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.04 Total: -25.30 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 1.90 Total: 54.70 kcal Total: -88.68 1.48 -87.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264554664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.518 kcal (2) G-P(sol) polarization free energy of solvation -88.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds