Wall clock time and date at job start Wed Apr 1 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.44864 * 2 1 4 4 C 1.53043 * 109.46480 * 240.02906 * 2 1 3 5 5 C 1.53619 * 109.24140 * 178.49265 * 4 2 1 6 6 N 1.46928 * 108.54462 * 54.85850 * 5 4 2 7 7 C 1.34780 * 120.62860 * 126.36962 * 6 5 4 8 8 O 1.21278 * 119.99524 * 185.82810 * 7 6 5 9 9 C 1.50698 * 120.00141 * 5.82844 * 7 6 5 10 10 H 1.08997 * 109.42407 * 41.10627 * 9 7 6 11 11 C 1.53030 * 109.42212 * 160.99364 * 9 7 6 12 12 C 1.53388 * 109.72129 * 191.73441 * 11 9 7 13 13 C 1.50876 * 108.19627 * 309.44877 * 12 11 9 14 14 C 1.34574 * 128.32793 * 196.91917 * 13 12 11 15 15 N 1.35196 * 107.61915 * 180.02562 * 14 13 12 16 16 H 0.96998 * 126.00719 * 179.89896 * 15 14 13 17 17 N 1.40315 * 107.99015 * 359.66586 * 15 14 13 18 18 C 1.30129 * 108.12671 * 0.26302 * 17 15 14 19 19 C 1.50945 * 128.28759 * 179.82105 * 18 17 15 20 20 C 1.46924 * 118.73587 * 306.09025 * 6 5 4 21 21 H 1.08999 * 109.58909 * 293.93260 * 20 6 5 22 22 C 1.53000 * 109.58326 * 173.65059 * 20 6 5 23 23 N 1.46495 * 109.47460 * 68.27146 * 22 20 6 24 24 C 1.36935 * 120.00610 * 174.32970 * 23 22 20 25 25 H 1.08005 * 119.99466 * 359.97438 * 24 23 22 26 26 C 1.38810 * 120.00697 * 179.97438 * 24 23 22 27 27 N 1.31620 * 119.99536 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 120.00516 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.46864 * 0.02562 * 28 26 24 30 30 H 1.48497 * 109.46962 * 119.99797 * 28 26 24 31 31 H 1.48494 * 109.47164 * 240.00366 * 28 26 24 32 32 C 1.53044 * 109.45739 * 119.96157 * 2 1 3 33 33 H 1.08998 * 109.47567 * 300.03829 * 1 2 3 34 34 H 1.08993 * 109.47004 * 60.04063 * 1 2 3 35 35 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 36 36 H 1.09000 * 109.49604 * 298.56743 * 4 2 1 37 37 H 1.08997 * 109.49337 * 58.62728 * 4 2 1 38 38 H 1.08999 * 109.73829 * 295.11724 * 5 4 2 39 39 H 1.09003 * 109.65949 * 174.54922 * 5 4 2 40 40 H 1.08996 * 109.42828 * 71.66112 * 11 9 7 41 41 H 1.08999 * 109.42530 * 311.80997 * 11 9 7 42 42 H 1.08995 * 109.71805 * 189.76895 * 12 11 9 43 43 H 1.09001 * 109.71514 * 69.12325 * 12 11 9 44 44 H 1.08000 * 126.18926 * 359.87933 * 14 13 12 45 45 H 1.08998 * 109.71799 * 77.10673 * 19 18 17 46 46 H 1.08994 * 109.75511 * 316.47889 * 19 18 17 47 47 H 1.09011 * 109.47074 * 188.26936 * 22 20 6 48 48 H 1.08998 * 109.47589 * 308.26603 * 22 20 6 49 49 H 0.97007 * 119.99937 * 354.33559 * 23 22 20 50 50 H 0.97002 * 120.00267 * 179.97438 * 27 26 24 51 51 H 1.08997 * 109.49744 * 61.43915 * 32 2 1 52 52 H 1.09000 * 109.49912 * 301.34076 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5757 -0.6849 -1.2640 6 7 4.0679 -1.2488 0.0003 7 6 4.9622 -2.2572 0.0004 8 8 5.2810 -2.7848 1.0448 9 6 5.5659 -2.7290 -1.2973 10 1 5.7996 -1.8675 -1.9227 11 6 6.8493 -3.5104 -1.0070 12 6 7.6213 -3.7409 -2.3123 13 6 6.6670 -4.3181 -3.3284 14 6 6.9568 -4.9539 -4.4786 15 7 5.7867 -5.2938 -5.0643 16 1 5.6860 -5.7623 -5.9077 17 7 4.7433 -4.8547 -4.2351 18 6 5.2690 -4.2704 -3.1980 19 6 4.5631 -3.6312 -2.0269 20 6 3.5713 -0.6885 1.2644 21 1 3.9163 0.3402 1.3687 22 6 4.0911 -1.5249 2.4354 23 7 5.5403 -1.3480 2.5566 24 6 6.2130 -1.9094 3.6090 25 1 5.6751 -2.4822 4.3499 26 6 7.5862 -1.7422 3.7235 27 7 8.2417 -1.0437 2.8208 28 14 8.5040 -2.5086 5.1587 29 1 7.5450 -3.2386 6.0264 30 1 9.5252 -3.4560 4.6440 31 1 9.1713 -1.4411 5.9463 32 6 2.0398 -0.7207 1.2502 33 1 -0.3634 0.5144 0.8896 34 1 -0.3633 0.5132 -0.8903 35 1 -0.3633 -1.0277 0.0005 36 1 1.6979 -1.7557 -1.2382 37 1 1.6568 -0.2212 -2.1397 38 1 3.9189 0.3449 -1.3630 39 1 3.9488 -1.2784 -2.0987 40 1 6.5953 -4.4721 -0.5614 41 1 7.4703 -2.9430 -0.3139 42 1 8.4392 -4.4398 -2.1372 43 1 8.0181 -2.7935 -2.6770 44 1 7.9452 -5.1540 -4.8651 45 1 4.2027 -4.4042 -1.3482 46 1 3.7237 -3.0346 -2.3837 47 1 3.6072 -1.2004 3.3567 48 1 3.8670 -2.5768 2.2583 49 1 6.0234 -0.8331 1.8914 50 1 9.2012 -0.9265 2.9010 51 1 1.6978 -1.7555 1.2384 52 1 1.6571 -0.2206 2.1399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264567029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:01 Heat of formation + Delta-G solvation = 76.661067 kcal Electronic energy + Delta-G solvation = -32654.348159 eV Core-core repulsion = 28656.544314 eV Total energy + Delta-G solvation = -3997.803845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.50377 -40.16581 -37.55130 -36.05089 -34.19575 -33.57060 -32.23814 -31.86611 -30.36879 -29.72571 -28.45701 -28.07475 -25.42991 -24.72302 -23.17650 -22.80870 -22.30839 -21.05590 -20.71444 -19.94254 -19.05249 -18.17753 -17.60876 -17.01286 -16.26586 -15.52157 -15.14129 -14.88699 -14.67003 -14.49668 -14.35946 -14.05834 -13.89389 -13.46070 -13.38354 -13.25829 -13.11883 -12.87523 -12.73925 -12.56204 -12.36644 -12.01750 -11.84830 -11.74215 -11.61342 -11.44018 -11.18499 -10.92995 -10.88284 -10.81349 -10.67302 -10.64127 -10.55497 -10.34110 -10.16801 -10.08057 -9.75720 -9.44019 -9.40413 -8.65470 -8.41972 -8.13751 -7.94059 -6.42826 -5.49590 -2.68652 1.84822 2.72446 2.77782 3.45868 3.51932 3.59427 3.63739 3.65568 4.48695 4.70717 4.76115 4.77349 4.84371 4.89768 5.03974 5.09750 5.18795 5.24721 5.35462 5.43590 5.50962 5.53993 5.58568 5.63107 5.64116 5.66356 5.74428 5.77405 5.82685 5.83888 5.87061 5.93754 6.00048 6.06086 6.12133 6.14975 6.17939 6.21088 6.27958 6.32768 6.48192 6.55035 6.62971 6.66300 6.76840 6.86808 7.05469 7.22408 7.39264 7.63806 7.93771 8.10912 8.68843 9.10677 9.80450 10.40946 10.75594 11.74555 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007465 B = 0.004857 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3749.988822 B = 5763.267173 C = 9042.952774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.616 5.616 7 C 0.479 3.521 8 O -0.439 6.439 9 C -0.094 4.094 10 H 0.085 0.915 11 C -0.098 4.098 12 C -0.042 4.042 13 C -0.226 4.226 14 C 0.054 3.946 15 N -0.490 5.490 16 H 0.436 0.564 17 N -0.293 5.293 18 C 0.089 3.911 19 C -0.028 4.028 20 C 0.143 3.857 21 H 0.066 0.934 22 C 0.162 3.838 23 N -0.696 5.696 24 C -0.203 4.203 25 H 0.064 0.936 26 C -0.021 4.021 27 N -0.938 5.938 28 Si 0.898 3.102 29 H -0.284 1.284 30 H -0.296 1.296 31 H -0.297 1.297 32 C -0.120 4.120 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.174 0.826 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.012 0.988 48 H 0.040 0.960 49 H 0.379 0.621 50 H 0.248 0.752 51 H 0.065 0.935 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 -1.814 -17.818 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.016 4.016 6 N -0.355 5.355 7 C 0.263 3.737 8 O -0.306 6.306 9 C -0.116 4.116 10 H 0.103 0.897 11 C -0.136 4.136 12 C -0.080 4.080 13 C -0.238 4.238 14 C -0.092 4.092 15 N -0.198 5.198 16 H 0.280 0.720 17 N -0.115 5.115 18 C -0.079 4.079 19 C -0.067 4.067 20 C 0.039 3.961 21 H 0.084 0.916 22 C 0.034 3.966 23 N -0.339 5.339 24 C -0.335 4.335 25 H 0.082 0.918 26 C -0.215 4.215 27 N -0.590 5.590 28 Si 0.731 3.269 29 H -0.209 1.209 30 H -0.223 1.223 31 H -0.225 1.225 32 C -0.159 4.159 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.191 0.809 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.030 0.970 48 H 0.058 0.942 49 H 0.213 0.787 50 H 0.058 0.942 51 H 0.084 0.916 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.063 -2.592 -17.609 20.957 hybrid contribution 1.525 -0.246 0.164 1.554 sum -9.538 -2.838 -17.445 20.083 Atomic orbital electron populations 1.21816 0.95408 1.01651 1.01351 1.21103 0.95240 0.99592 0.95050 0.91211 1.22054 0.95582 1.01214 0.97793 1.21761 0.93722 0.99091 0.87065 1.47876 1.45212 1.36685 1.05679 1.20294 0.80370 0.82264 0.90746 1.91124 1.57095 1.52242 1.30109 1.21265 0.96215 0.98752 0.95382 0.89692 1.21370 0.94698 1.01117 0.96386 1.20066 0.95614 0.99830 0.92514 1.20288 0.94578 1.09909 0.99007 1.22055 0.91762 1.00180 0.95164 1.46285 1.03494 1.49083 1.20963 0.72038 1.76978 1.11399 1.18954 1.04174 1.22299 0.93262 0.97452 0.94934 1.20102 0.96622 0.98278 0.91723 1.21455 0.92313 0.97853 0.84462 0.91632 1.20875 0.86818 0.97119 0.91759 1.42250 1.01068 1.61585 1.28958 1.19192 0.90169 1.23920 1.00245 0.91807 1.24554 0.96336 1.01926 0.98718 1.69660 1.07100 1.46148 1.36069 0.86207 0.79960 0.78391 0.82320 1.20934 1.22323 1.22453 1.21962 0.95477 1.01064 0.97432 0.92753 0.93000 0.92815 0.91542 0.91389 0.92102 0.89875 0.91274 0.89330 0.91041 0.91217 0.80854 0.89392 0.89772 0.97016 0.94217 0.78695 0.94215 0.91577 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.09 -0.96 2.68 -90.57 -0.24 -1.20 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.28 5.38 -26.39 -0.14 -1.42 16 5 C 0.11 1.25 5.91 -3.49 -0.02 1.23 16 6 N -0.62 -9.60 2.97 -164.96 -0.49 -10.09 16 7 C 0.48 8.66 6.15 -10.98 -0.07 8.59 16 8 O -0.44 -10.12 9.88 5.56 0.05 -10.07 16 9 C -0.09 -1.40 1.61 -91.57 -0.15 -1.55 16 10 H 0.08 1.18 7.13 -51.93 -0.37 0.81 16 11 C -0.10 -1.59 4.55 -26.51 -0.12 -1.71 16 12 C -0.04 -0.54 6.28 -27.60 -0.17 -0.72 16 13 C -0.23 -2.85 5.89 -104.98 -0.62 -3.47 16 14 C 0.05 0.53 11.95 -17.37 -0.21 0.32 16 15 N -0.49 -4.92 7.37 30.35 0.22 -4.70 16 16 H 0.44 2.80 8.96 -182.44 -1.64 1.17 16 17 N -0.29 -3.92 12.68 33.75 0.43 -3.49 16 18 C 0.09 1.21 7.10 -82.35 -0.58 0.63 16 19 C -0.03 -0.37 5.29 -27.58 -0.15 -0.52 16 20 C 0.14 2.38 2.94 -67.60 -0.20 2.18 16 21 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 22 C 0.16 3.48 4.87 -4.04 -0.02 3.46 16 23 N -0.70 -18.33 3.19 -59.91 -0.19 -18.52 16 24 C -0.20 -5.97 9.72 -15.06 -0.15 -6.12 16 25 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16 26 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 27 N -0.94 -29.19 13.06 55.49 0.72 -28.47 16 28 Si 0.90 23.63 29.55 -169.99 -5.02 18.60 16 29 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 31 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 32 C -0.12 -1.57 4.65 -26.61 -0.12 -1.69 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.89 4.31 -51.93 -0.22 0.67 16 40 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.09 1.76 8.01 -51.93 -0.42 1.34 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.09 1.25 8.12 -51.93 -0.42 0.83 16 46 H 0.08 0.98 6.31 -51.93 -0.33 0.66 16 47 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 48 H 0.04 0.93 6.39 -51.93 -0.33 0.60 16 49 H 0.38 10.60 6.94 -40.82 -0.28 10.31 16 50 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -35.34 393.98 -10.94 -46.28 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -9.90 Total: 8.17 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.71 Total: -3.66 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: 0.70 Total: -65.27 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.05 Total: -10.07 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.34 -10.94 -46.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264567029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.945 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds