Wall clock time and date at job start Wed Apr 1 2020 04:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.44864 * 2 1 4 4 C 1.53043 * 109.46480 * 240.02906 * 2 1 3 5 5 C 1.53619 * 109.24140 * 178.49265 * 4 2 1 6 6 N 1.46928 * 108.54462 * 54.85850 * 5 4 2 7 7 C 1.34780 * 120.62860 * 126.36962 * 6 5 4 8 8 O 1.21278 * 119.99524 * 185.82810 * 7 6 5 9 9 C 1.50698 * 120.00141 * 5.82844 * 7 6 5 10 10 H 1.08997 * 109.42407 * 41.10627 * 9 7 6 11 11 C 1.53030 * 109.42212 * 160.99364 * 9 7 6 12 12 C 1.53388 * 109.72129 * 191.73441 * 11 9 7 13 13 C 1.50876 * 108.19627 * 309.44877 * 12 11 9 14 14 C 1.34574 * 128.32793 * 196.91917 * 13 12 11 15 15 N 1.35196 * 107.61915 * 180.02562 * 14 13 12 16 16 H 0.96998 * 126.00719 * 179.89896 * 15 14 13 17 17 N 1.40315 * 107.99015 * 359.66586 * 15 14 13 18 18 C 1.30129 * 108.12671 * 0.26302 * 17 15 14 19 19 C 1.50945 * 128.28759 * 179.82105 * 18 17 15 20 20 C 1.46924 * 118.73587 * 306.09025 * 6 5 4 21 21 H 1.08999 * 109.58909 * 293.93260 * 20 6 5 22 22 C 1.53000 * 109.58326 * 173.65059 * 20 6 5 23 23 N 1.46495 * 109.47460 * 68.27146 * 22 20 6 24 24 C 1.36935 * 120.00610 * 174.32970 * 23 22 20 25 25 H 1.08005 * 119.99466 * 359.97438 * 24 23 22 26 26 C 1.38810 * 120.00697 * 179.97438 * 24 23 22 27 27 N 1.31620 * 119.99536 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 120.00516 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.46864 * 0.02562 * 28 26 24 30 30 H 1.48497 * 109.46962 * 119.99797 * 28 26 24 31 31 H 1.48494 * 109.47164 * 240.00366 * 28 26 24 32 32 C 1.53044 * 109.45739 * 119.96157 * 2 1 3 33 33 H 1.08998 * 109.47567 * 300.03829 * 1 2 3 34 34 H 1.08993 * 109.47004 * 60.04063 * 1 2 3 35 35 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 36 36 H 1.09000 * 109.49604 * 298.56743 * 4 2 1 37 37 H 1.08997 * 109.49337 * 58.62728 * 4 2 1 38 38 H 1.08999 * 109.73829 * 295.11724 * 5 4 2 39 39 H 1.09003 * 109.65949 * 174.54922 * 5 4 2 40 40 H 1.08996 * 109.42828 * 71.66112 * 11 9 7 41 41 H 1.08999 * 109.42530 * 311.80997 * 11 9 7 42 42 H 1.08995 * 109.71805 * 189.76895 * 12 11 9 43 43 H 1.09001 * 109.71514 * 69.12325 * 12 11 9 44 44 H 1.08000 * 126.18926 * 359.87933 * 14 13 12 45 45 H 1.08998 * 109.71799 * 77.10673 * 19 18 17 46 46 H 1.08994 * 109.75511 * 316.47889 * 19 18 17 47 47 H 1.09011 * 109.47074 * 188.26936 * 22 20 6 48 48 H 1.08998 * 109.47589 * 308.26603 * 22 20 6 49 49 H 0.97007 * 119.99937 * 354.33559 * 23 22 20 50 50 H 0.97002 * 120.00267 * 179.97438 * 27 26 24 51 51 H 1.08997 * 109.49744 * 61.43915 * 32 2 1 52 52 H 1.09000 * 109.49912 * 301.34076 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5757 -0.6849 -1.2640 6 7 4.0679 -1.2488 0.0003 7 6 4.9622 -2.2572 0.0004 8 8 5.2810 -2.7848 1.0448 9 6 5.5659 -2.7290 -1.2973 10 1 5.7996 -1.8675 -1.9227 11 6 6.8493 -3.5104 -1.0070 12 6 7.6213 -3.7409 -2.3123 13 6 6.6670 -4.3181 -3.3284 14 6 6.9568 -4.9539 -4.4786 15 7 5.7867 -5.2938 -5.0643 16 1 5.6860 -5.7623 -5.9077 17 7 4.7433 -4.8547 -4.2351 18 6 5.2690 -4.2704 -3.1980 19 6 4.5631 -3.6312 -2.0269 20 6 3.5713 -0.6885 1.2644 21 1 3.9163 0.3402 1.3687 22 6 4.0911 -1.5249 2.4354 23 7 5.5403 -1.3480 2.5566 24 6 6.2130 -1.9094 3.6090 25 1 5.6751 -2.4822 4.3499 26 6 7.5862 -1.7422 3.7235 27 7 8.2417 -1.0437 2.8208 28 14 8.5040 -2.5086 5.1587 29 1 7.5450 -3.2386 6.0264 30 1 9.5252 -3.4560 4.6440 31 1 9.1713 -1.4411 5.9463 32 6 2.0398 -0.7207 1.2502 33 1 -0.3634 0.5144 0.8896 34 1 -0.3633 0.5132 -0.8903 35 1 -0.3633 -1.0277 0.0005 36 1 1.6979 -1.7557 -1.2382 37 1 1.6568 -0.2212 -2.1397 38 1 3.9189 0.3449 -1.3630 39 1 3.9488 -1.2784 -2.0987 40 1 6.5953 -4.4721 -0.5614 41 1 7.4703 -2.9430 -0.3139 42 1 8.4392 -4.4398 -2.1372 43 1 8.0181 -2.7935 -2.6770 44 1 7.9452 -5.1540 -4.8651 45 1 4.2027 -4.4042 -1.3482 46 1 3.7237 -3.0346 -2.3837 47 1 3.6072 -1.2004 3.3567 48 1 3.8670 -2.5768 2.2583 49 1 6.0234 -0.8331 1.8914 50 1 9.2012 -0.9265 2.9010 51 1 1.6978 -1.7555 1.2384 52 1 1.6571 -0.2206 2.1399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264567029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:59 Heat of formation + Delta-G solvation = 53.852572 kcal Electronic energy + Delta-G solvation = -32655.337209 eV Core-core repulsion = 28656.544314 eV Total energy + Delta-G solvation = -3998.792895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.46424 -41.47362 -38.72243 -37.37217 -36.01376 -34.73118 -33.77830 -33.06526 -31.61271 -31.30456 -29.47906 -29.12064 -27.11138 -25.92032 -24.48698 -24.13241 -23.79661 -22.15024 -21.89428 -20.96452 -20.17566 -19.46959 -19.02186 -18.45242 -17.67042 -16.82585 -16.68088 -16.20092 -15.93765 -15.76386 -15.48530 -15.28388 -15.12778 -14.97573 -14.58644 -14.55663 -14.35203 -14.27365 -14.00449 -13.69818 -13.62608 -13.34516 -13.09501 -12.88097 -12.82162 -12.75605 -12.64425 -12.51364 -12.24455 -12.12250 -12.07165 -12.01191 -11.83963 -11.78938 -11.63095 -11.26285 -11.19899 -11.11953 -10.82791 -10.33185 -9.70514 -9.37179 -9.32115 -8.55182 -7.79540 -4.97472 0.98792 1.45107 1.47084 1.56141 1.75921 1.93650 2.10515 2.26930 2.64499 3.43174 3.53379 3.71624 3.77460 3.82073 3.87955 3.94268 4.02186 4.14405 4.17659 4.34207 4.37340 4.41017 4.45622 4.50621 4.54560 4.57782 4.60984 4.68410 4.73100 4.84236 4.85740 4.89280 4.94390 4.98104 5.03363 5.07193 5.12251 5.18497 5.19681 5.26167 5.29097 5.31877 5.39145 5.42135 5.47622 5.56558 5.62283 5.69556 5.93687 6.41772 6.52077 6.74695 6.76912 7.48121 7.69031 8.27888 8.51727 9.45173 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007465 B = 0.004857 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3749.988822 B = 5763.267173 C = 9042.952774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.122 4.122 5 C 0.101 3.899 6 N -0.613 5.613 7 C 0.478 3.522 8 O -0.502 6.502 9 C -0.081 4.081 10 H 0.101 0.899 11 C -0.091 4.091 12 C -0.030 4.030 13 C -0.258 4.258 14 C 0.080 3.920 15 N -0.475 5.475 16 H 0.453 0.547 17 N -0.317 5.317 18 C 0.074 3.926 19 C -0.016 4.016 20 C 0.148 3.852 21 H 0.059 0.941 22 C 0.165 3.835 23 N -0.701 5.701 24 C -0.209 4.209 25 H 0.058 0.942 26 C -0.079 4.079 27 N -0.969 5.969 28 Si 0.961 3.039 29 H -0.275 1.275 30 H -0.298 1.298 31 H -0.293 1.293 32 C -0.111 4.111 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.217 0.783 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.009 0.991 48 H 0.021 0.979 49 H 0.368 0.632 50 H 0.244 0.756 51 H 0.059 0.941 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 -1.649 -20.726 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.160 4.160 5 C -0.021 4.021 6 N -0.350 5.350 7 C 0.264 3.736 8 O -0.374 6.374 9 C -0.103 4.103 10 H 0.119 0.881 11 C -0.129 4.129 12 C -0.068 4.068 13 C -0.269 4.269 14 C -0.067 4.067 15 N -0.185 5.185 16 H 0.300 0.700 17 N -0.140 5.140 18 C -0.094 4.094 19 C -0.056 4.056 20 C 0.044 3.956 21 H 0.077 0.923 22 C 0.039 3.961 23 N -0.342 5.342 24 C -0.342 4.342 25 H 0.076 0.924 26 C -0.270 4.270 27 N -0.622 5.622 28 Si 0.792 3.208 29 H -0.200 1.200 30 H -0.226 1.226 31 H -0.220 1.220 32 C -0.150 4.150 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.027 0.973 48 H 0.039 0.961 49 H 0.200 0.800 50 H 0.053 0.947 51 H 0.078 0.922 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.327 -2.416 -20.559 24.093 hybrid contribution 1.844 -0.350 0.984 2.119 sum -10.483 -2.765 -19.575 22.377 Atomic orbital electron populations 1.21763 0.93692 1.01918 1.02345 1.21088 0.96557 0.99325 0.93598 0.90760 1.22038 0.93733 1.01442 0.98762 1.22084 0.95298 0.99575 0.85169 1.48001 1.44251 1.35757 1.06940 1.20936 0.79818 0.81700 0.91167 1.91096 1.59125 1.54763 1.32386 1.21151 0.95813 0.99410 0.93972 0.88070 1.21213 0.95165 0.99190 0.97362 1.19904 0.95483 1.00674 0.90711 1.20306 0.93979 1.12228 1.00377 1.22600 0.93133 0.97322 0.93621 1.46334 1.02966 1.48101 1.21130 0.69978 1.76906 1.12814 1.19701 1.04619 1.22239 0.93840 0.98199 0.95078 1.19918 0.96489 0.97667 0.91482 1.21304 0.94820 0.96104 0.83332 0.92332 1.20882 0.84452 0.96939 0.93863 1.42293 1.02782 1.61205 1.27907 1.19470 0.90776 1.23249 1.00669 0.92427 1.25258 0.97092 1.03197 1.01463 1.69809 1.06895 1.47715 1.37810 0.85221 0.78539 0.77487 0.79542 1.19972 1.22599 1.22010 1.21896 0.92186 1.01326 0.99603 0.92562 0.91275 0.92917 0.91823 0.88357 0.91035 0.88600 0.93625 0.94022 0.90242 0.90359 0.76664 0.91088 0.87856 0.97322 0.96150 0.80009 0.94691 0.92232 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 2 C -0.09 -1.61 2.68 -10.76 -0.03 -1.64 16 3 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.12 -2.06 5.38 30.82 0.17 -1.90 16 5 C 0.10 2.15 5.91 86.51 0.51 2.67 16 6 N -0.61 -19.29 2.97 -794.20 -2.36 -21.64 16 7 C 0.48 18.14 6.15 87.66 0.54 18.68 16 8 O -0.50 -24.91 9.88 -3.02 -0.03 -24.94 16 9 C -0.08 -2.50 1.61 -11.41 -0.02 -2.51 16 10 H 0.10 2.76 7.13 -2.39 -0.02 2.74 16 11 C -0.09 -3.16 4.55 30.73 0.14 -3.02 16 12 C -0.03 -0.76 6.28 30.03 0.19 -0.57 16 13 C -0.26 -6.05 5.89 -20.10 -0.12 -6.17 16 14 C 0.08 1.30 11.95 83.34 1.00 2.30 16 15 N -0.47 -8.02 7.37 -57.88 -0.43 -8.45 16 16 H 0.45 4.21 8.96 -213.18 -1.91 2.29 16 17 N -0.32 -7.84 12.68 -47.14 -0.60 -8.44 16 18 C 0.07 1.92 7.10 43.44 0.31 2.23 16 19 C -0.02 -0.43 5.29 30.04 0.16 -0.27 16 20 C 0.15 5.05 2.94 44.97 0.13 5.18 16 21 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 22 C 0.17 7.48 4.87 86.38 0.42 7.90 16 23 N -0.70 -39.00 3.19 -343.45 -1.10 -40.10 16 24 C -0.21 -12.83 9.72 84.03 0.82 -12.02 16 25 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 26 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 27 N -0.97 -62.72 13.06 21.65 0.28 -62.43 16 28 Si 0.96 50.22 29.55 68.60 2.03 52.25 16 29 H -0.27 -13.77 7.11 99.48 0.71 -13.06 16 30 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 31 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 32 C -0.11 -2.81 4.65 30.67 0.14 -2.67 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.82 4.31 -2.39 -0.01 1.81 16 40 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 41 H 0.04 1.81 8.01 -2.39 -0.02 1.79 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 46 H 0.10 2.26 6.31 -2.39 -0.02 2.25 16 47 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 48 H 0.02 1.03 6.39 -2.39 -0.02 1.01 16 49 H 0.37 21.75 6.94 -92.70 -0.64 21.10 16 50 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 51 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -81.91 393.98 1.67 -80.24 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -1.62 Total: 31.14 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.48 Total: 2.37 kcal Atomic # 7 Polarization: -136.87 SS G_CDS: -4.19 Total: -141.07 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.03 Total: -24.94 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.03 Total: 52.25 kcal Total: -81.91 1.67 -80.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264567029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.096 kcal (2) G-P(sol) polarization free energy of solvation -81.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds