Wall clock time and date at job start Wed Apr 1 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.28919 * 2 1 4 4 C 1.54004 * 110.32539 * 122.13516 * 2 1 3 5 5 N 1.47481 * 107.08118 * 120.19830 * 4 2 1 6 6 C 1.34780 * 127.03069 * 154.52259 * 5 4 2 7 7 O 1.21627 * 120.00035 * 177.94427 * 6 5 4 8 8 C 1.47167 * 119.99978 * 357.93368 * 6 5 4 9 9 C 1.38399 * 126.88526 * 7.06601 * 8 6 5 10 10 C 1.39668 * 105.35995 * 180.02562 * 9 8 6 11 11 N 1.30863 * 107.86091 * 359.74493 * 10 9 8 12 12 N 1.28441 * 110.92641 * 0.43946 * 11 10 9 13 13 C 1.46499 * 125.18883 * 179.82477 * 12 11 10 14 14 C 1.53008 * 109.46631 * 272.33494 * 13 12 11 15 15 C 1.53782 * 113.61217 * 272.72261 * 14 13 12 16 16 C 1.53781 * 87.08169 * 220.01971 * 15 14 13 17 17 C 1.53777 * 113.61223 * 175.22529 * 14 13 12 18 18 C 1.48114 * 105.93563 * 334.77707 * 5 4 2 19 19 C 1.54594 * 103.42292 * 39.02308 * 18 5 4 20 20 H 1.09009 * 110.57169 * 81.16869 * 19 18 5 21 21 C 1.52994 * 110.99216 * 204.37278 * 19 18 5 22 22 N 1.46505 * 109.47439 * 288.65661 * 21 19 18 23 23 C 1.36934 * 119.99986 * 180.02562 * 22 21 19 24 24 H 1.07996 * 120.00183 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99490 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00360 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99670 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47412 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47232 * 119.99646 * 27 25 23 30 30 H 1.48499 * 109.47003 * 239.99292 * 27 25 23 31 31 H 1.09002 * 109.47298 * 302.57014 * 1 2 3 32 32 H 1.09007 * 109.47143 * 62.56734 * 1 2 3 33 33 H 1.08997 * 109.47456 * 182.56551 * 1 2 3 34 34 H 1.09001 * 109.91061 * 0.83811 * 4 2 1 35 35 H 1.08998 * 110.07239 * 239.64570 * 4 2 1 36 36 H 1.08008 * 127.31832 * 359.97438 * 9 8 6 37 37 H 1.07999 * 126.06982 * 180.02562 * 10 9 8 38 38 H 1.09001 * 109.47503 * 32.33136 * 13 12 11 39 39 H 1.08997 * 109.47305 * 152.34189 * 13 12 11 40 40 H 1.08995 * 112.85284 * 44.02720 * 14 13 12 41 41 H 1.09002 * 113.61262 * 334.56313 * 15 14 13 42 42 H 1.08998 * 113.61286 * 105.47319 * 15 14 13 43 43 H 1.09005 * 113.61460 * 270.88730 * 16 15 14 44 44 H 1.08992 * 113.61857 * 139.97909 * 16 15 14 45 45 H 1.09001 * 113.61871 * 254.52598 * 17 14 13 46 46 H 1.08999 * 113.61627 * 25.43193 * 17 14 13 47 47 H 1.09000 * 110.66349 * 157.50970 * 18 5 4 48 48 H 1.09008 * 110.66123 * 280.62475 * 18 5 4 49 49 H 1.09004 * 109.46891 * 48.65710 * 21 19 18 50 50 H 1.09003 * 109.47308 * 168.65089 * 21 19 18 51 51 H 0.97003 * 119.99578 * 359.97438 * 22 21 19 52 52 H 0.96998 * 120.00211 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2229 5 7 2.8804 -1.8850 0.7102 6 6 3.8922 -2.5095 1.3449 7 8 4.4572 -3.4465 0.8137 8 6 4.3137 -2.0574 2.6805 9 6 3.6920 -1.1055 3.4697 10 6 4.4623 -1.0285 4.6322 11 7 5.4495 -1.8798 4.5168 12 7 5.3972 -2.4927 3.3892 13 6 6.3505 -3.5083 2.9354 14 6 7.5248 -2.8264 2.2303 15 6 7.2865 -2.5849 0.7303 16 6 8.7540 -2.9898 0.5123 17 6 8.6426 -3.7978 1.8160 18 6 2.3640 -2.1759 -0.6472 19 6 2.0670 -0.7736 -1.2263 20 1 2.9806 -0.3134 -1.6031 21 6 1.0067 -0.8483 -2.3267 22 7 1.5818 -1.4800 -3.5170 23 6 0.8143 -1.6553 -4.6374 24 1 -0.2150 -1.3284 -4.6435 25 6 1.3591 -2.2543 -5.7649 26 7 2.6134 -2.6532 -5.7573 27 14 0.3120 -2.4942 -7.2932 28 1 -1.0532 -1.9646 -7.0461 29 1 0.9264 -1.7676 -8.4333 30 1 0.2303 -3.9416 -7.6150 31 1 -0.3634 0.5532 0.8661 32 1 -0.3634 0.4735 -0.9122 33 1 -0.3634 -1.0266 0.0460 34 1 1.2330 -1.1554 1.8111 35 1 2.6801 -0.1111 1.8377 36 1 2.8010 -0.5415 3.2360 37 1 4.2739 -0.3843 5.4784 38 1 6.7188 -4.0703 3.7936 39 1 5.8550 -4.1875 2.2416 40 1 7.8859 -1.9471 2.7635 41 1 6.5719 -3.2769 0.2848 42 1 7.0796 -1.5436 0.4833 43 1 9.4513 -2.1543 0.5747 44 1 8.9098 -3.6073 -0.3722 45 1 9.5305 -3.7358 2.4453 46 1 8.2987 -4.8214 1.6672 47 1 3.1194 -2.6859 -1.2450 48 1 1.4507 -2.7684 -0.5925 49 1 0.1598 -1.4380 -1.9757 50 1 0.6702 0.1580 -2.5760 51 1 2.5064 -1.7732 -3.5115 52 1 2.9941 -3.0714 -6.5453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271617076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:31 Heat of formation + Delta-G solvation = 87.480521 kcal Electronic energy + Delta-G solvation = -31416.010903 eV Core-core repulsion = 27418.676225 eV Total energy + Delta-G solvation = -3997.334678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.71708 -40.01483 -39.00529 -37.92895 -34.81803 -33.51718 -32.88506 -31.37301 -31.01481 -28.86023 -28.42815 -26.79362 -25.73800 -25.47416 -24.00278 -23.47907 -22.50699 -21.69072 -21.41314 -19.63587 -19.53674 -19.05265 -17.56184 -16.78840 -16.69608 -16.33408 -15.82103 -15.70487 -15.42329 -14.85470 -14.79107 -14.38022 -14.24001 -14.01015 -13.85008 -13.55371 -13.37381 -13.06289 -12.87535 -12.52254 -12.48232 -12.32300 -12.29942 -12.11258 -11.83215 -11.71687 -11.56515 -11.04062 -10.89646 -10.88759 -10.85817 -10.58887 -10.47564 -10.43645 -10.42680 -10.26320 -9.99699 -9.92809 -9.69021 -9.31438 -9.13414 -8.88838 -8.68137 -6.92953 -5.76515 -3.05774 1.16580 2.17815 2.47513 2.98931 3.15052 3.43230 3.48622 3.51094 4.18886 4.27104 4.44029 4.47359 4.55263 4.55765 4.57940 4.72956 4.79170 4.84359 5.01263 5.02396 5.10270 5.23139 5.26749 5.37241 5.41984 5.47166 5.51487 5.53063 5.56833 5.59078 5.64920 5.70925 5.78364 5.79225 5.81007 5.92234 5.94777 6.03994 6.05383 6.10719 6.14412 6.26099 6.32574 6.35526 6.41102 6.46016 6.60693 6.69222 6.81938 7.45490 7.69842 7.89290 8.07261 8.41685 9.53074 10.10292 10.44289 11.46146 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.002896 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.375747 B = 9665.022035 C =11689.182805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.084 0.916 4 C 0.089 3.911 5 N -0.603 5.603 6 C 0.605 3.395 7 O -0.536 6.536 8 C -0.025 4.025 9 C -0.207 4.207 10 C -0.008 4.008 11 N -0.281 5.281 12 N -0.251 5.251 13 C 0.121 3.879 14 C -0.126 4.126 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.127 4.127 18 C 0.120 3.880 19 C -0.103 4.103 20 H 0.082 0.918 21 C 0.165 3.835 22 N -0.734 5.734 23 C -0.240 4.240 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.026 0.974 50 H 0.025 0.975 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 3.805 22.181 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.034 4.034 5 N -0.336 5.336 6 C 0.393 3.607 7 O -0.414 6.414 8 C -0.154 4.154 9 C -0.235 4.235 10 C -0.183 4.183 11 N -0.113 5.113 12 N -0.038 5.038 13 C 0.001 3.999 14 C -0.145 4.145 15 C -0.175 4.175 16 C -0.180 4.180 17 C -0.165 4.165 18 C -0.001 4.001 19 C -0.123 4.123 20 H 0.101 0.899 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.089 0.911 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.188 0.812 37 H 0.201 0.799 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.043 0.957 50 H 0.042 0.958 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.734 2.710 22.346 23.495 hybrid contribution -0.944 0.243 -1.158 1.513 sum 5.790 2.953 21.188 22.163 Atomic orbital electron populations 1.21925 0.93899 1.02345 1.02198 1.22058 0.96721 0.99380 0.93690 0.89798 1.22777 0.94752 0.88606 0.97255 1.48441 1.32289 1.34544 1.18305 1.16418 0.79198 0.82242 0.82852 1.90748 1.54969 1.28404 1.67281 1.21366 0.94270 1.03063 0.96661 1.22808 1.03889 1.01622 0.95226 1.23568 0.93863 1.00784 1.00113 1.73183 1.24229 1.09851 1.04054 1.45781 1.18936 1.28916 1.10168 1.22417 0.88649 0.88203 1.00638 1.22943 0.94960 0.99807 0.96820 1.23159 0.97392 1.02561 0.94358 1.22790 0.97332 0.99988 0.97844 1.22851 0.97566 0.98472 0.97584 1.22549 0.99728 0.97518 0.80330 1.22465 1.00480 0.94480 0.94890 0.89918 1.20712 0.93264 0.96164 0.86107 1.42418 1.13173 1.72038 1.10217 1.19239 0.94531 1.32612 0.90748 0.91133 1.24745 0.96292 1.01565 0.98308 1.69669 1.12537 1.46372 1.29370 0.86140 0.79311 0.77420 0.83441 1.20566 1.21898 1.21879 0.92911 0.91184 0.92183 0.90877 0.89521 0.81196 0.79862 0.88590 0.85957 0.88916 0.87647 0.92127 0.90436 0.90977 0.91226 0.89583 0.89089 0.90434 0.95666 0.95775 0.78289 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.80 37.16 0.29 -1.19 16 2 C -0.10 -1.08 3.53 -89.24 -0.32 -1.40 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.09 0.90 5.18 -2.98 -0.02 0.89 16 5 N -0.60 -8.16 3.29 -171.34 -0.56 -8.73 16 6 C 0.61 8.90 7.87 -12.63 -0.10 8.80 16 7 O -0.54 -9.07 12.41 5.25 0.07 -9.01 16 8 C -0.02 -0.32 6.92 -82.06 -0.57 -0.89 16 9 C -0.21 -2.17 9.40 -38.99 -0.37 -2.54 16 10 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 11 N -0.28 -3.46 11.90 30.59 0.36 -3.10 16 12 N -0.25 -3.17 3.35 -57.14 -0.19 -3.36 16 13 C 0.12 1.34 5.79 -4.04 -0.02 1.31 16 14 C -0.13 -1.32 3.96 -89.80 -0.36 -1.68 16 15 C -0.14 -1.67 7.23 -25.92 -0.19 -1.86 16 16 C -0.14 -1.42 8.08 -25.91 -0.21 -1.63 16 17 C -0.13 -1.12 7.64 -25.92 -0.20 -1.31 16 18 C 0.12 1.87 6.44 -2.32 -0.01 1.85 16 19 C -0.10 -1.55 2.98 -88.94 -0.27 -1.81 16 20 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 21 C 0.17 3.06 4.40 -4.04 -0.02 3.04 16 22 N -0.73 -17.98 5.52 -59.91 -0.33 -18.31 16 23 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 27 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.78 6.57 -51.92 -0.34 0.44 16 33 H 0.06 0.64 7.69 -51.93 -0.40 0.24 16 34 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 35 H 0.09 0.75 5.07 -51.93 -0.26 0.49 16 36 H 0.17 1.35 4.94 -52.48 -0.26 1.09 16 37 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.12 1.50 5.77 -51.93 -0.30 1.20 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.11 1.51 5.84 -51.93 -0.30 1.21 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 47 H 0.09 1.66 7.87 -51.93 -0.41 1.25 16 48 H 0.08 1.22 7.95 -51.92 -0.41 0.81 16 49 H 0.03 0.47 6.91 -51.93 -0.36 0.11 16 50 H 0.02 0.45 7.34 -51.93 -0.38 0.07 16 51 H 0.38 10.01 7.67 -40.82 -0.31 9.70 16 52 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -32.32 401.99 -10.03 -42.35 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.33 Total: 10.10 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.80 Total: -5.90 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.00 Total: -60.83 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.32 -10.03 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271617076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.834 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds