Wall clock time and date at job start Wed Apr 1 2020 05:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.28919 * 2 1 4 4 C 1.54004 * 110.32539 * 122.13516 * 2 1 3 5 5 N 1.47481 * 107.08118 * 120.19830 * 4 2 1 6 6 C 1.34780 * 127.03069 * 154.52259 * 5 4 2 7 7 O 1.21627 * 120.00035 * 177.94427 * 6 5 4 8 8 C 1.47167 * 119.99978 * 357.93368 * 6 5 4 9 9 C 1.38399 * 126.88526 * 7.06601 * 8 6 5 10 10 C 1.39668 * 105.35995 * 180.02562 * 9 8 6 11 11 N 1.30863 * 107.86091 * 359.74493 * 10 9 8 12 12 N 1.28441 * 110.92641 * 0.43946 * 11 10 9 13 13 C 1.46499 * 125.18883 * 179.82477 * 12 11 10 14 14 C 1.53008 * 109.46631 * 272.33494 * 13 12 11 15 15 C 1.53782 * 113.61217 * 272.72261 * 14 13 12 16 16 C 1.53781 * 87.08169 * 220.01971 * 15 14 13 17 17 C 1.53777 * 113.61223 * 175.22529 * 14 13 12 18 18 C 1.48114 * 105.93563 * 334.77707 * 5 4 2 19 19 C 1.54594 * 103.42292 * 39.02308 * 18 5 4 20 20 H 1.09009 * 110.57169 * 81.16869 * 19 18 5 21 21 C 1.52994 * 110.99216 * 204.37278 * 19 18 5 22 22 N 1.46505 * 109.47439 * 288.65661 * 21 19 18 23 23 C 1.36934 * 119.99986 * 180.02562 * 22 21 19 24 24 H 1.07996 * 120.00183 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99490 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00360 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99670 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47412 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47232 * 119.99646 * 27 25 23 30 30 H 1.48499 * 109.47003 * 239.99292 * 27 25 23 31 31 H 1.09002 * 109.47298 * 302.57014 * 1 2 3 32 32 H 1.09007 * 109.47143 * 62.56734 * 1 2 3 33 33 H 1.08997 * 109.47456 * 182.56551 * 1 2 3 34 34 H 1.09001 * 109.91061 * 0.83811 * 4 2 1 35 35 H 1.08998 * 110.07239 * 239.64570 * 4 2 1 36 36 H 1.08008 * 127.31832 * 359.97438 * 9 8 6 37 37 H 1.07999 * 126.06982 * 180.02562 * 10 9 8 38 38 H 1.09001 * 109.47503 * 32.33136 * 13 12 11 39 39 H 1.08997 * 109.47305 * 152.34189 * 13 12 11 40 40 H 1.08995 * 112.85284 * 44.02720 * 14 13 12 41 41 H 1.09002 * 113.61262 * 334.56313 * 15 14 13 42 42 H 1.08998 * 113.61286 * 105.47319 * 15 14 13 43 43 H 1.09005 * 113.61460 * 270.88730 * 16 15 14 44 44 H 1.08992 * 113.61857 * 139.97909 * 16 15 14 45 45 H 1.09001 * 113.61871 * 254.52598 * 17 14 13 46 46 H 1.08999 * 113.61627 * 25.43193 * 17 14 13 47 47 H 1.09000 * 110.66349 * 157.50970 * 18 5 4 48 48 H 1.09008 * 110.66123 * 280.62475 * 18 5 4 49 49 H 1.09004 * 109.46891 * 48.65710 * 21 19 18 50 50 H 1.09003 * 109.47308 * 168.65089 * 21 19 18 51 51 H 0.97003 * 119.99578 * 359.97438 * 22 21 19 52 52 H 0.96998 * 120.00211 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2229 5 7 2.8804 -1.8850 0.7102 6 6 3.8922 -2.5095 1.3449 7 8 4.4572 -3.4465 0.8137 8 6 4.3137 -2.0574 2.6805 9 6 3.6920 -1.1055 3.4697 10 6 4.4623 -1.0285 4.6322 11 7 5.4495 -1.8798 4.5168 12 7 5.3972 -2.4927 3.3892 13 6 6.3505 -3.5083 2.9354 14 6 7.5248 -2.8264 2.2303 15 6 7.2865 -2.5849 0.7303 16 6 8.7540 -2.9898 0.5123 17 6 8.6426 -3.7978 1.8160 18 6 2.3640 -2.1759 -0.6472 19 6 2.0670 -0.7736 -1.2263 20 1 2.9806 -0.3134 -1.6031 21 6 1.0067 -0.8483 -2.3267 22 7 1.5818 -1.4800 -3.5170 23 6 0.8143 -1.6553 -4.6374 24 1 -0.2150 -1.3284 -4.6435 25 6 1.3591 -2.2543 -5.7649 26 7 2.6134 -2.6532 -5.7573 27 14 0.3120 -2.4942 -7.2932 28 1 -1.0532 -1.9646 -7.0461 29 1 0.9264 -1.7676 -8.4333 30 1 0.2303 -3.9416 -7.6150 31 1 -0.3634 0.5532 0.8661 32 1 -0.3634 0.4735 -0.9122 33 1 -0.3634 -1.0266 0.0460 34 1 1.2330 -1.1554 1.8111 35 1 2.6801 -0.1111 1.8377 36 1 2.8010 -0.5415 3.2360 37 1 4.2739 -0.3843 5.4784 38 1 6.7188 -4.0703 3.7936 39 1 5.8550 -4.1875 2.2416 40 1 7.8859 -1.9471 2.7635 41 1 6.5719 -3.2769 0.2848 42 1 7.0796 -1.5436 0.4833 43 1 9.4513 -2.1543 0.5747 44 1 8.9098 -3.6073 -0.3722 45 1 9.5305 -3.7358 2.4453 46 1 8.2987 -4.8214 1.6672 47 1 3.1194 -2.6859 -1.2450 48 1 1.4507 -2.7684 -0.5925 49 1 0.1598 -1.4380 -1.9757 50 1 0.6702 0.1580 -2.5760 51 1 2.5064 -1.7732 -3.5115 52 1 2.9941 -3.0714 -6.5453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271617076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:29 Heat of formation + Delta-G solvation = 68.061467 kcal Electronic energy + Delta-G solvation = -31416.852977 eV Core-core repulsion = 27418.676225 eV Total energy + Delta-G solvation = -3998.176751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.59293 -41.12216 -39.87147 -39.09336 -36.49388 -34.66610 -34.01961 -32.84578 -32.20274 -30.27298 -29.27911 -27.81301 -26.94402 -26.59626 -25.33657 -24.50643 -23.87995 -22.79598 -22.36448 -20.59184 -20.43453 -20.27175 -19.13232 -18.22635 -17.68508 -17.32795 -17.02499 -16.61069 -16.56015 -16.29059 -15.92544 -15.51868 -15.29874 -15.17961 -15.05491 -14.78266 -14.70234 -14.30316 -13.87907 -13.82320 -13.48546 -13.47914 -13.26747 -13.13477 -13.03857 -12.84961 -12.78716 -12.60797 -12.54943 -12.11505 -11.86164 -11.83500 -11.75296 -11.57054 -11.49010 -11.46375 -11.31686 -11.24997 -11.04857 -10.90528 -10.25934 -9.97428 -9.77272 -8.97834 -7.93794 -5.22676 0.20430 1.25434 1.47509 1.48328 1.58349 1.66691 1.97701 2.11642 2.56622 3.22856 3.38528 3.40408 3.55231 3.59825 3.63875 3.68032 3.75983 3.86154 3.88620 4.09213 4.14852 4.17249 4.25571 4.34446 4.37566 4.39510 4.48551 4.59405 4.60078 4.68439 4.71727 4.78857 4.81001 4.83926 4.84527 4.86306 4.91155 4.98189 4.99980 5.02957 5.15966 5.19266 5.25289 5.27378 5.41353 5.47296 5.52374 5.57113 5.57667 5.75029 6.28118 6.38746 6.90419 7.10187 7.34060 8.11023 8.32098 9.30078 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.002896 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.375747 B = 9665.022035 C =11689.182805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.103 0.897 4 C 0.088 3.912 5 N -0.603 5.603 6 C 0.597 3.403 7 O -0.571 6.571 8 C -0.051 4.051 9 C -0.191 4.191 10 C -0.003 4.003 11 N -0.297 5.297 12 N -0.261 5.261 13 C 0.120 3.880 14 C -0.116 4.116 15 C -0.146 4.146 16 C -0.140 4.140 17 C -0.114 4.114 18 C 0.126 3.874 19 C -0.096 4.096 20 H 0.064 0.936 21 C 0.167 3.833 22 N -0.750 5.750 23 C -0.239 4.239 24 H 0.080 0.920 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.972 3.028 28 H -0.262 1.262 29 H -0.295 1.295 30 H -0.296 1.296 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.200 0.800 37 H 0.221 0.779 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.050 0.950 48 H 0.075 0.925 49 H 0.033 0.967 50 H 0.032 0.968 51 H 0.370 0.630 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 5.678 24.910 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.122 0.878 4 C -0.033 4.033 5 N -0.335 5.335 6 C 0.386 3.614 7 O -0.452 6.452 8 C -0.179 4.179 9 C -0.219 4.219 10 C -0.179 4.179 11 N -0.130 5.130 12 N -0.049 5.049 13 C 0.000 4.000 14 C -0.135 4.135 15 C -0.183 4.183 16 C -0.177 4.177 17 C -0.152 4.152 18 C 0.003 3.997 19 C -0.116 4.116 20 H 0.083 0.917 21 C 0.041 3.959 22 N -0.392 5.392 23 C -0.371 4.371 24 H 0.098 0.902 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.801 3.199 28 H -0.186 1.186 29 H -0.222 1.222 30 H -0.224 1.224 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.216 0.784 37 H 0.238 0.762 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.051 0.949 50 H 0.050 0.950 51 H 0.201 0.799 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.414 4.626 25.118 26.108 hybrid contribution -0.600 -0.284 -1.934 2.045 sum 4.814 4.343 23.183 24.073 Atomic orbital electron populations 1.21919 0.92759 1.02325 1.03184 1.22063 0.97526 0.99729 0.91340 0.87827 1.23048 0.95337 0.87753 0.97188 1.48448 1.32391 1.35308 1.17342 1.16807 0.78993 0.81937 0.83623 1.90735 1.56061 1.30060 1.68311 1.21304 0.95583 1.04803 0.96258 1.23190 1.04124 1.00172 0.94439 1.24245 0.92628 1.00133 1.00872 1.73184 1.25324 1.10574 1.03904 1.45884 1.19190 1.29410 1.10386 1.22402 0.88496 0.88150 1.00942 1.22854 0.95321 1.00196 0.95127 1.23075 0.98376 1.00636 0.96218 1.22820 0.95740 1.00552 0.98609 1.22817 0.97621 0.98045 0.96743 1.22267 0.98305 0.97622 0.81459 1.22289 0.98924 0.94755 0.95660 0.91712 1.20873 0.94222 0.95738 0.85070 1.42697 1.12570 1.72411 1.11522 1.19686 0.95008 1.30934 0.91486 0.90202 1.25584 0.97514 1.02423 1.01569 1.69841 1.14423 1.48118 1.29900 0.85087 0.78492 0.76771 0.79513 1.18632 1.22219 1.22372 0.89607 0.92321 0.92942 0.88472 0.87199 0.78376 0.76205 0.86832 0.87826 0.88977 0.90396 0.93976 0.89289 0.91290 0.89045 0.89237 0.93142 0.90708 0.94881 0.94990 0.79858 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.80 71.98 0.56 -1.89 16 2 C -0.09 -1.68 3.53 -9.90 -0.03 -1.72 16 3 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.09 1.53 5.18 86.53 0.45 1.97 16 5 N -0.60 -16.30 3.29 -814.25 -2.68 -18.98 16 6 C 0.60 18.10 7.87 86.59 0.68 18.78 16 7 O -0.57 -20.94 12.41 -4.12 -0.05 -20.99 16 8 C -0.05 -1.29 6.92 40.79 0.28 -1.01 16 9 C -0.19 -3.40 9.40 22.65 0.21 -3.19 16 10 C 0.00 -0.06 12.03 85.18 1.02 0.97 16 11 N -0.30 -6.75 11.90 -57.14 -0.68 -7.43 16 12 N -0.26 -6.44 3.35 -334.68 -1.12 -7.56 16 13 C 0.12 2.70 5.79 86.38 0.50 3.20 16 14 C -0.12 -2.45 3.96 -10.27 -0.04 -2.49 16 15 C -0.15 -3.81 7.23 31.12 0.22 -3.59 16 16 C -0.14 -2.85 8.08 31.12 0.25 -2.60 16 17 C -0.11 -1.95 7.64 31.12 0.24 -1.71 16 18 C 0.13 4.11 6.44 86.61 0.56 4.67 16 19 C -0.10 -2.90 2.98 -9.70 -0.03 -2.93 16 20 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 21 C 0.17 6.18 4.40 86.38 0.38 6.56 16 22 N -0.75 -37.75 5.52 -343.45 -1.90 -39.65 16 23 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 24 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 25 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 26 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 27 Si 0.97 46.43 29.55 68.60 2.03 48.45 16 28 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 29 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 30 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.15 6.57 -2.38 -0.02 1.13 16 33 H 0.05 0.98 7.69 -2.39 -0.02 0.96 16 34 H 0.10 1.30 7.68 -2.39 -0.02 1.29 16 35 H 0.11 1.44 5.07 -2.39 -0.01 1.42 16 36 H 0.20 2.18 4.94 -2.91 -0.01 2.17 16 37 H 0.22 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.10 2.75 5.77 -2.39 -0.01 2.73 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 2.50 5.84 -2.39 -0.01 2.48 16 42 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 47 H 0.05 2.04 7.87 -2.39 -0.02 2.02 16 48 H 0.07 2.44 7.95 -2.38 -0.02 2.42 16 49 H 0.03 1.20 6.91 -2.38 -0.02 1.18 16 50 H 0.03 1.16 7.34 -2.39 -0.02 1.14 16 51 H 0.37 20.38 7.67 -92.71 -0.71 19.67 16 52 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -74.03 401.99 2.67 -71.36 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 0.22 Total: 36.75 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.56 Total: -1.52 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -6.10 Total: -134.06 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.99 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -74.03 2.67 -71.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271617076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.425 kcal (2) G-P(sol) polarization free energy of solvation -74.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds