Wall clock time and date at job start Wed Apr 1 2020 04:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46009 * 2 1 4 4 C 1.53042 * 109.45982 * 240.02709 * 2 1 3 5 5 C 1.53193 * 109.34126 * 178.59708 * 4 2 1 6 6 N 1.47002 * 108.73682 * 54.62334 * 5 4 2 7 7 C 1.34772 * 120.61284 * 126.38725 * 6 5 4 8 8 O 1.21601 * 119.99633 * 186.65657 * 7 6 5 9 9 C 1.47539 * 120.00294 * 6.65632 * 7 6 5 10 10 C 1.40346 * 120.47394 * 215.12155 * 9 7 6 11 11 C 1.36868 * 118.48880 * 179.72788 * 10 9 7 12 12 C 1.39392 * 119.37898 * 0.57100 * 11 10 9 13 13 N 1.38454 * 119.54147 * 179.72129 * 12 11 10 14 14 C 1.46501 * 119.99793 * 4.96722 * 13 12 11 15 15 C 1.46502 * 120.00279 * 184.97743 * 13 12 11 16 16 N 1.32601 * 120.92196 * 359.68963 * 12 11 10 17 17 C 1.31682 * 121.63618 * 0.02562 * 16 12 11 18 18 C 1.46927 * 118.75220 * 306.40834 * 6 5 4 19 19 H 1.08997 * 109.59065 * 293.82114 * 18 6 5 20 20 C 1.53003 * 109.58320 * 173.39419 * 18 6 5 21 21 N 1.46495 * 109.46847 * 70.38889 * 20 18 6 22 22 C 1.36939 * 119.99867 * 180.33256 * 21 20 18 23 23 H 1.08005 * 119.99925 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00253 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00364 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99678 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47277 * 90.00394 * 26 24 22 28 28 H 1.48501 * 109.46827 * 210.00249 * 26 24 22 29 29 H 1.48496 * 109.47179 * 329.99829 * 26 24 22 30 30 C 1.53042 * 109.46153 * 119.96177 * 2 1 3 31 31 H 1.09004 * 109.47567 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47214 * 299.97479 * 1 2 3 33 33 H 1.09002 * 109.47154 * 59.96939 * 1 2 3 34 34 H 1.09000 * 109.49872 * 298.56947 * 4 2 1 35 35 H 1.09003 * 109.49766 * 58.63306 * 4 2 1 36 36 H 1.08993 * 109.58711 * 174.43504 * 5 4 2 37 37 H 1.09001 * 109.58431 * 294.86745 * 5 4 2 38 38 H 1.08002 * 120.75541 * 359.97438 * 10 9 7 39 39 H 1.08000 * 120.30925 * 180.23918 * 11 10 9 40 40 H 1.09006 * 109.46836 * 90.00580 * 14 13 12 41 41 H 1.08997 * 109.47406 * 210.00419 * 14 13 12 42 42 H 1.08997 * 109.47268 * 330.00540 * 14 13 12 43 43 H 1.09008 * 109.46965 * 89.99159 * 15 13 12 44 44 H 1.08998 * 109.47267 * 209.99387 * 15 13 12 45 45 H 1.09001 * 109.46663 * 329.99726 * 15 13 12 46 46 H 1.08006 * 119.73584 * 179.97438 * 17 16 12 47 47 H 1.09002 * 109.46659 * 190.38750 * 20 18 6 48 48 H 1.09002 * 109.47304 * 310.38368 * 20 18 6 49 49 H 0.96997 * 120.00710 * 0.33816 * 21 20 18 50 50 H 0.96994 * 120.00143 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.49478 * 301.33780 * 30 2 1 52 52 H 1.09000 * 109.49834 * 61.39464 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6887 -1.2651 6 7 4.0679 -1.2489 0.0001 7 6 4.9614 -2.2578 0.0002 8 8 5.2732 -2.7937 1.0462 9 6 5.5611 -2.7122 -1.2689 10 6 5.8582 -4.0691 -1.4702 11 6 6.4087 -4.4466 -2.6651 12 6 6.6675 -3.4793 -3.6348 13 7 7.2296 -3.8566 -4.8425 14 6 7.4479 -5.2750 -5.1374 15 6 7.6065 -2.8376 -5.8253 16 7 6.3821 -2.2028 -3.4170 17 6 5.8469 -1.7982 -2.2840 18 6 3.5714 -0.6884 1.2643 19 1 3.9143 0.3411 1.3673 20 6 4.0912 -1.5248 2.4353 21 7 5.5320 -1.3088 2.5880 22 6 6.2217 -1.9626 3.5740 23 1 5.7034 -2.6377 4.2388 24 6 7.5869 -1.7575 3.7191 25 7 8.2498 -2.3862 4.6665 26 14 8.4831 -0.5892 2.5696 27 1 8.4681 0.7797 3.1448 28 1 9.8880 -1.0404 2.4022 29 1 7.8059 -0.5784 1.2481 30 6 2.0398 -0.7207 1.2501 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8897 34 1 1.6977 -1.7558 -1.2382 35 1 1.6567 -0.2213 -2.1398 36 1 3.9411 -1.2846 -2.0994 37 1 3.9141 0.3408 -1.3683 38 1 5.6533 -4.7993 -0.7012 39 1 6.6454 -5.4835 -2.8527 40 1 6.5650 -5.6838 -5.6290 41 1 8.3112 -5.3809 -5.7943 42 1 7.6296 -5.8155 -4.2085 43 1 8.6370 -2.5279 -5.6505 44 1 7.5167 -3.2510 -6.8298 45 1 6.9464 -1.9759 -5.7265 46 1 5.6273 -0.7506 -2.1391 47 1 3.5799 -1.2259 3.3504 48 1 3.9005 -2.5803 2.2408 49 1 5.9976 -0.7027 1.9907 50 1 9.2037 -2.2427 4.7681 51 1 1.6572 -0.2205 2.1398 52 1 1.6972 -1.7553 1.2388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316701842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:49 Heat of formation + Delta-G solvation = 78.130230 kcal Electronic energy + Delta-G solvation = -32183.806051 eV Core-core repulsion = 28186.065914 eV Total energy + Delta-G solvation = -3997.740137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.84907 -39.73927 -37.40111 -36.61604 -34.59724 -33.77852 -32.52360 -32.11141 -30.43043 -30.12525 -28.48867 -28.28418 -25.89868 -25.51605 -23.91366 -22.93176 -22.55091 -21.97802 -21.12816 -20.07437 -19.25483 -17.65188 -17.44514 -16.88059 -16.47943 -15.61544 -15.42603 -15.07942 -14.89446 -14.67993 -14.59980 -14.19795 -14.07470 -13.95524 -13.55845 -13.51543 -13.13605 -13.02379 -12.88521 -12.83108 -12.56048 -12.45938 -12.35684 -12.18939 -12.02056 -11.94461 -11.79466 -11.65263 -11.20807 -10.99562 -10.78098 -10.72312 -10.48346 -10.17142 -10.03596 -9.92244 -9.74641 -9.54371 -9.34405 -8.71223 -8.38222 -8.13285 -7.63770 -6.77302 -5.50703 -2.77333 1.07522 1.39332 2.71783 3.30966 3.32824 3.52513 3.56846 3.59378 4.00980 4.34587 4.66771 4.68693 4.73399 4.76965 4.82795 4.85684 4.95584 5.00882 5.07208 5.09974 5.15490 5.20973 5.26461 5.36050 5.41851 5.42227 5.49497 5.53813 5.61581 5.65881 5.68981 5.70109 5.74065 5.81158 5.87169 5.96602 5.99349 6.01725 6.05534 6.11638 6.23757 6.29567 6.42696 6.45729 6.64115 6.70057 6.91039 7.16597 7.26021 7.87532 8.01672 8.25255 8.67419 8.87092 9.48573 10.21970 10.42626 11.69494 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007464 B = 0.004795 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.318143 B = 5838.350742 C = 8637.136648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.127 4.127 5 C 0.099 3.901 6 N -0.614 5.614 7 C 0.529 3.471 8 O -0.443 6.443 9 C -0.228 4.228 10 C 0.018 3.982 11 C -0.244 4.244 12 C 0.409 3.591 13 N -0.616 5.616 14 C 0.093 3.907 15 C 0.098 3.902 16 N -0.547 5.547 17 C 0.171 3.829 18 C 0.141 3.859 19 H 0.067 0.933 20 C 0.163 3.837 21 N -0.727 5.727 22 C -0.202 4.202 23 H 0.086 0.914 24 C -0.005 4.005 25 N -0.946 5.946 26 Si 0.881 3.119 27 H -0.290 1.290 28 H -0.296 1.296 29 H -0.282 1.282 30 C -0.120 4.120 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.161 0.839 47 H 0.019 0.981 48 H 0.055 0.945 49 H 0.354 0.646 50 H 0.254 0.746 51 H 0.074 0.926 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 0.188 -23.425 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.166 4.166 5 C -0.024 4.024 6 N -0.351 5.351 7 C 0.315 3.685 8 O -0.312 6.312 9 C -0.236 4.236 10 C -0.008 4.008 11 C -0.269 4.269 12 C 0.175 3.825 13 N -0.329 5.329 14 C -0.050 4.050 15 C -0.045 4.045 16 N -0.265 5.265 17 C 0.013 3.987 18 C 0.037 3.963 19 H 0.085 0.915 20 C 0.036 3.964 21 N -0.371 5.371 22 C -0.332 4.332 23 H 0.104 0.896 24 C -0.198 4.198 25 N -0.596 5.596 26 Si 0.713 3.287 27 H -0.217 1.217 28 H -0.223 1.223 29 H -0.208 1.208 30 C -0.159 4.159 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.178 0.822 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.187 0.813 50 H 0.064 0.936 51 H 0.092 0.908 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.323 0.245 -23.462 26.053 hybrid contribution 0.762 0.294 -0.376 0.899 sum -10.561 0.539 -23.838 26.078 Atomic orbital electron populations 1.21812 0.95226 1.01726 1.01451 1.21120 0.95438 0.99559 0.94942 0.91141 1.21975 0.95336 1.01314 0.97927 1.22028 0.94244 0.98902 0.87224 1.47806 1.44643 1.36601 1.06091 1.18031 0.80360 0.81780 0.88377 1.91204 1.57958 1.52530 1.29545 1.20835 1.09906 0.95366 0.97486 1.21125 0.89598 0.94938 0.95175 1.21112 1.10278 1.00337 0.95144 1.18423 0.88908 0.89369 0.85848 1.46089 1.65309 1.06519 1.15008 1.21742 1.01127 0.80229 1.01911 1.21576 1.00467 0.92082 0.90358 1.67194 1.19520 1.15675 1.24065 1.22828 0.89845 0.99534 0.86514 1.21543 0.92878 0.97757 0.84078 0.91480 1.20921 0.85523 0.98103 0.91817 1.42594 1.03695 1.52874 1.37919 1.18984 0.90922 1.18421 1.04897 0.89617 1.24530 0.96139 1.00514 0.98651 1.69694 1.07757 1.46969 1.35210 0.86564 0.79407 0.81351 0.81390 1.21684 1.22256 1.20820 1.21962 0.94961 1.01362 0.97650 0.92771 0.92640 0.92946 0.91544 0.91208 0.89342 0.91785 0.84057 0.84688 0.92872 0.91016 0.90779 0.93438 0.91977 0.90073 0.82179 0.96311 0.92694 0.81337 0.93611 0.90757 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.09 -0.90 2.68 -90.58 -0.24 -1.15 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -1.22 5.36 -26.61 -0.14 -1.36 16 5 C 0.10 1.13 4.78 -3.67 -0.02 1.11 16 6 N -0.61 -9.46 2.97 -166.37 -0.49 -9.96 16 7 C 0.53 9.87 6.91 -12.47 -0.09 9.79 16 8 O -0.44 -10.41 10.60 5.28 0.06 -10.35 16 9 C -0.23 -3.73 5.28 -104.82 -0.55 -4.28 16 10 C 0.02 0.27 9.69 -39.29 -0.38 -0.11 16 11 C -0.24 -3.17 9.20 -39.65 -0.36 -3.54 16 12 C 0.41 5.44 7.36 -155.28 -1.14 4.29 16 13 N -0.62 -6.43 3.37 -189.70 -0.64 -7.07 16 14 C 0.09 0.65 10.27 59.85 0.61 1.27 16 15 C 0.10 0.85 10.49 59.85 0.63 1.48 16 16 N -0.55 -7.83 9.04 -12.14 -0.11 -7.94 16 17 C 0.17 2.50 8.54 -17.13 -0.15 2.35 16 18 C 0.14 2.24 2.92 -67.60 -0.20 2.04 16 19 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 20 C 0.16 3.42 4.87 -4.04 -0.02 3.40 16 21 N -0.73 -18.70 3.12 -59.91 -0.19 -18.88 16 22 C -0.20 -6.15 9.96 -15.06 -0.15 -6.30 16 23 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 24 C 0.00 -0.15 5.50 -17.43 -0.10 -0.25 16 25 N -0.95 -31.77 13.97 55.49 0.78 -30.99 16 26 Si 0.88 24.34 27.74 -169.99 -4.71 19.62 16 27 H -0.29 -7.83 7.11 56.52 0.40 -7.42 16 28 H -0.30 -8.30 7.11 56.52 0.40 -7.90 16 29 H -0.28 -7.54 6.52 56.52 0.37 -7.17 16 30 C -0.12 -1.48 4.64 -26.61 -0.12 -1.60 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.99 4.55 -51.93 -0.24 0.75 16 37 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 38 H 0.14 2.13 8.05 -52.49 -0.42 1.71 16 39 H 0.14 1.38 5.99 -52.49 -0.31 1.07 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 42 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 43 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 44 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 45 H 0.08 0.79 7.28 -51.93 -0.38 0.41 16 46 H 0.16 2.07 6.10 -52.48 -0.32 1.75 16 47 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 48 H 0.06 1.26 6.20 -51.93 -0.32 0.94 16 49 H 0.35 9.14 5.25 -40.82 -0.21 8.92 16 50 H 0.25 8.16 8.31 -40.82 -0.34 7.83 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -37.76 396.79 -9.85 -47.62 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.44 Total: 5.70 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.08 Total: 6.27 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -0.66 Total: -74.84 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.06 Total: -10.35 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.71 Total: 19.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.76 -9.85 -47.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316701842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.746 kcal (2) G-P(sol) polarization free energy of solvation -37.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds