Wall clock time and date at job start Wed Apr 1 2020 04:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46009 * 2 1 4 4 C 1.53042 * 109.45982 * 240.02709 * 2 1 3 5 5 C 1.53193 * 109.34126 * 178.59708 * 4 2 1 6 6 N 1.47002 * 108.73682 * 54.62334 * 5 4 2 7 7 C 1.34772 * 120.61284 * 126.38725 * 6 5 4 8 8 O 1.21601 * 119.99633 * 186.65657 * 7 6 5 9 9 C 1.47539 * 120.00294 * 6.65632 * 7 6 5 10 10 C 1.40346 * 120.47394 * 215.12155 * 9 7 6 11 11 C 1.36868 * 118.48880 * 179.72788 * 10 9 7 12 12 C 1.39392 * 119.37898 * 0.57100 * 11 10 9 13 13 N 1.38454 * 119.54147 * 179.72129 * 12 11 10 14 14 C 1.46501 * 119.99793 * 4.96722 * 13 12 11 15 15 C 1.46502 * 120.00279 * 184.97743 * 13 12 11 16 16 N 1.32601 * 120.92196 * 359.68963 * 12 11 10 17 17 C 1.31682 * 121.63618 * 0.02562 * 16 12 11 18 18 C 1.46927 * 118.75220 * 306.40834 * 6 5 4 19 19 H 1.08997 * 109.59065 * 293.82114 * 18 6 5 20 20 C 1.53003 * 109.58320 * 173.39419 * 18 6 5 21 21 N 1.46495 * 109.46847 * 70.38889 * 20 18 6 22 22 C 1.36939 * 119.99867 * 180.33256 * 21 20 18 23 23 H 1.08005 * 119.99925 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00253 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00364 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99678 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47277 * 90.00394 * 26 24 22 28 28 H 1.48501 * 109.46827 * 210.00249 * 26 24 22 29 29 H 1.48496 * 109.47179 * 329.99829 * 26 24 22 30 30 C 1.53042 * 109.46153 * 119.96177 * 2 1 3 31 31 H 1.09004 * 109.47567 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47214 * 299.97479 * 1 2 3 33 33 H 1.09002 * 109.47154 * 59.96939 * 1 2 3 34 34 H 1.09000 * 109.49872 * 298.56947 * 4 2 1 35 35 H 1.09003 * 109.49766 * 58.63306 * 4 2 1 36 36 H 1.08993 * 109.58711 * 174.43504 * 5 4 2 37 37 H 1.09001 * 109.58431 * 294.86745 * 5 4 2 38 38 H 1.08002 * 120.75541 * 359.97438 * 10 9 7 39 39 H 1.08000 * 120.30925 * 180.23918 * 11 10 9 40 40 H 1.09006 * 109.46836 * 90.00580 * 14 13 12 41 41 H 1.08997 * 109.47406 * 210.00419 * 14 13 12 42 42 H 1.08997 * 109.47268 * 330.00540 * 14 13 12 43 43 H 1.09008 * 109.46965 * 89.99159 * 15 13 12 44 44 H 1.08998 * 109.47267 * 209.99387 * 15 13 12 45 45 H 1.09001 * 109.46663 * 329.99726 * 15 13 12 46 46 H 1.08006 * 119.73584 * 179.97438 * 17 16 12 47 47 H 1.09002 * 109.46659 * 190.38750 * 20 18 6 48 48 H 1.09002 * 109.47304 * 310.38368 * 20 18 6 49 49 H 0.96997 * 120.00710 * 0.33816 * 21 20 18 50 50 H 0.96994 * 120.00143 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.49478 * 301.33780 * 30 2 1 52 52 H 1.09000 * 109.49834 * 61.39464 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6887 -1.2651 6 7 4.0679 -1.2489 0.0001 7 6 4.9614 -2.2578 0.0002 8 8 5.2732 -2.7937 1.0462 9 6 5.5611 -2.7122 -1.2689 10 6 5.8582 -4.0691 -1.4702 11 6 6.4087 -4.4466 -2.6651 12 6 6.6675 -3.4793 -3.6348 13 7 7.2296 -3.8566 -4.8425 14 6 7.4479 -5.2750 -5.1374 15 6 7.6065 -2.8376 -5.8253 16 7 6.3821 -2.2028 -3.4170 17 6 5.8469 -1.7982 -2.2840 18 6 3.5714 -0.6884 1.2643 19 1 3.9143 0.3411 1.3673 20 6 4.0912 -1.5248 2.4353 21 7 5.5320 -1.3088 2.5880 22 6 6.2217 -1.9626 3.5740 23 1 5.7034 -2.6377 4.2388 24 6 7.5869 -1.7575 3.7191 25 7 8.2498 -2.3862 4.6665 26 14 8.4831 -0.5892 2.5696 27 1 8.4681 0.7797 3.1448 28 1 9.8880 -1.0404 2.4022 29 1 7.8059 -0.5784 1.2481 30 6 2.0398 -0.7207 1.2501 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8897 34 1 1.6977 -1.7558 -1.2382 35 1 1.6567 -0.2213 -2.1398 36 1 3.9411 -1.2846 -2.0994 37 1 3.9141 0.3408 -1.3683 38 1 5.6533 -4.7993 -0.7012 39 1 6.6454 -5.4835 -2.8527 40 1 6.5650 -5.6838 -5.6290 41 1 8.3112 -5.3809 -5.7943 42 1 7.6296 -5.8155 -4.2085 43 1 8.6370 -2.5279 -5.6505 44 1 7.5167 -3.2510 -6.8298 45 1 6.9464 -1.9759 -5.7265 46 1 5.6273 -0.7506 -2.1391 47 1 3.5799 -1.2259 3.3504 48 1 3.9005 -2.5803 2.2408 49 1 5.9976 -0.7027 1.9907 50 1 9.2037 -2.2427 4.7681 51 1 1.6572 -0.2205 2.1398 52 1 1.6972 -1.7553 1.2388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316701842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:48 Heat of formation + Delta-G solvation = 53.445283 kcal Electronic energy + Delta-G solvation = -32184.876470 eV Core-core repulsion = 28186.065914 eV Total energy + Delta-G solvation = -3998.810557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.02727 -40.87114 -38.53251 -37.60611 -36.43586 -34.86476 -33.97825 -33.58124 -32.15267 -31.27806 -29.27540 -29.14801 -27.31299 -26.70674 -24.89543 -24.22747 -23.81202 -23.44408 -22.38241 -21.17949 -20.45926 -19.55850 -18.45908 -18.19750 -17.58311 -16.76223 -16.64770 -16.34555 -16.07214 -15.89732 -15.75269 -15.61276 -15.29958 -15.10063 -14.74569 -14.72008 -14.61188 -14.21795 -14.09871 -13.95122 -13.78216 -13.52730 -13.48350 -13.31746 -13.04059 -12.91053 -12.83848 -12.75294 -12.68483 -12.52568 -12.23298 -12.02707 -11.83254 -11.71511 -11.33650 -11.25439 -11.09005 -10.97272 -10.78458 -10.57735 -9.87105 -9.55023 -8.91896 -8.56043 -7.94415 -5.17434 -0.04214 0.28779 1.28422 1.34490 1.40346 1.91135 2.02903 2.10643 2.51322 2.86175 3.36887 3.38192 3.58093 3.67958 3.80808 3.86379 3.94027 3.98295 4.04234 4.12149 4.28355 4.30369 4.32190 4.33872 4.44543 4.50566 4.52378 4.63640 4.66011 4.77971 4.80375 4.84436 4.86910 4.92374 4.93988 4.95458 4.97259 5.03010 5.13666 5.13989 5.17812 5.28289 5.34888 5.40814 5.44788 5.58777 5.79935 5.85109 5.90525 6.24395 6.28582 6.59611 6.97403 7.17456 7.50419 7.96303 8.14895 9.29586 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007464 B = 0.004795 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.318143 B = 5838.350742 C = 8637.136648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.121 4.121 5 C 0.094 3.906 6 N -0.609 5.609 7 C 0.530 3.470 8 O -0.512 6.512 9 C -0.257 4.257 10 C 0.003 3.997 11 C -0.241 4.241 12 C 0.405 3.595 13 N -0.612 5.612 14 C 0.084 3.916 15 C 0.094 3.906 16 N -0.555 5.555 17 C 0.181 3.819 18 C 0.146 3.854 19 H 0.075 0.925 20 C 0.164 3.836 21 N -0.725 5.725 22 C -0.186 4.186 23 H 0.046 0.954 24 C -0.075 4.075 25 N -0.995 5.995 26 Si 0.953 3.047 27 H -0.274 1.274 28 H -0.301 1.301 29 H -0.270 1.270 30 C -0.113 4.113 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.161 0.839 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.177 0.823 47 H 0.018 0.982 48 H 0.032 0.968 49 H 0.356 0.644 50 H 0.252 0.748 51 H 0.083 0.917 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 2.046 -27.805 30.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.159 4.159 5 C -0.027 4.027 6 N -0.345 5.345 7 C 0.318 3.682 8 O -0.386 6.386 9 C -0.266 4.266 10 C -0.023 4.023 11 C -0.266 4.266 12 C 0.169 3.831 13 N -0.324 5.324 14 C -0.058 4.058 15 C -0.048 4.048 16 N -0.274 5.274 17 C 0.022 3.978 18 C 0.043 3.957 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.368 5.368 22 C -0.317 4.317 23 H 0.064 0.936 24 C -0.264 4.264 25 N -0.649 5.649 26 Si 0.783 3.217 27 H -0.200 1.200 28 H -0.229 1.229 29 H -0.196 1.196 30 C -0.152 4.152 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.147 0.853 39 H 0.178 0.822 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.194 0.806 47 H 0.035 0.965 48 H 0.050 0.950 49 H 0.188 0.812 50 H 0.061 0.939 51 H 0.101 0.899 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.337 2.130 -27.945 30.621 hybrid contribution 0.982 -0.427 0.827 1.352 sum -11.356 1.703 -27.118 29.449 Atomic orbital electron populations 1.21767 0.93750 1.01807 1.02469 1.21103 0.96561 0.99571 0.93268 0.90012 1.21957 0.93718 1.01156 0.99092 1.22333 0.95599 0.99731 0.85074 1.47934 1.43476 1.35576 1.07489 1.18500 0.79968 0.81319 0.88442 1.91176 1.60474 1.55144 1.31832 1.20719 1.12305 0.96269 0.97278 1.21167 0.90472 0.94674 0.95972 1.21309 1.09385 1.01729 0.94136 1.18746 0.88353 0.89131 0.86893 1.46485 1.63557 1.08344 1.14021 1.22019 1.02867 0.78283 1.02603 1.21719 1.00057 0.91692 0.91367 1.67291 1.20083 1.16244 1.23761 1.22982 0.88994 0.99842 0.85965 1.21443 0.95202 0.96607 0.82475 0.90669 1.20950 0.83138 0.97938 0.94184 1.42499 1.05306 1.52277 1.36725 1.18922 0.91179 1.16906 1.04737 0.93599 1.25280 0.97024 1.03226 1.00885 1.69883 1.07882 1.49504 1.37672 0.85398 0.77318 0.79416 0.79559 1.20014 1.22866 1.19605 1.21917 0.91914 1.01427 0.99915 0.93196 0.92351 0.91248 0.92573 0.88218 0.88994 0.89566 0.85316 0.82158 0.91307 0.88756 0.90750 0.93432 0.88934 0.91133 0.80605 0.96465 0.95048 0.81186 0.93946 0.89875 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.09 -1.43 2.68 -10.77 -0.03 -1.46 16 3 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 4 C -0.12 -1.94 5.36 30.67 0.16 -1.77 16 5 C 0.09 1.89 4.78 86.35 0.41 2.30 16 6 N -0.61 -18.36 2.97 -798.55 -2.37 -20.73 16 7 C 0.53 20.25 6.91 86.70 0.60 20.85 16 8 O -0.51 -25.37 10.60 -4.03 -0.04 -25.41 16 9 C -0.26 -8.45 5.28 -19.99 -0.11 -8.56 16 10 C 0.00 0.10 9.69 22.46 0.22 0.32 16 11 C -0.24 -6.02 9.20 22.23 0.20 -5.81 16 12 C 0.41 9.97 7.36 133.25 0.98 10.95 16 13 N -0.61 -10.97 3.37 -754.08 -2.54 -13.51 16 14 C 0.08 0.89 10.27 127.77 1.31 2.21 16 15 C 0.09 1.34 10.49 127.77 1.34 2.68 16 16 N -0.56 -14.84 9.04 -192.33 -1.74 -16.58 16 17 C 0.18 5.02 8.54 85.03 0.73 5.75 16 18 C 0.15 4.58 2.92 44.98 0.13 4.71 16 19 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 20 C 0.16 7.14 4.87 86.38 0.42 7.56 16 21 N -0.72 -38.44 3.12 -343.45 -1.07 -39.51 16 22 C -0.19 -11.88 9.96 84.03 0.84 -11.04 16 23 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 24 C -0.07 -4.90 5.50 84.86 0.47 -4.43 16 25 N -1.00 -69.76 13.97 21.65 0.30 -69.46 16 26 Si 0.95 51.69 27.74 68.60 1.90 53.60 16 27 H -0.27 -14.04 7.11 99.48 0.71 -13.34 16 28 H -0.30 -16.50 7.11 99.48 0.71 -15.80 16 29 H -0.27 -13.95 6.52 99.48 0.65 -13.30 16 30 C -0.11 -2.63 4.64 30.67 0.14 -2.49 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.83 4.55 -2.39 -0.01 1.82 16 37 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 38 H 0.13 4.19 8.05 -2.91 -0.02 4.17 16 39 H 0.16 3.01 5.99 -2.91 -0.02 3.00 16 40 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.09 0.62 8.07 -2.39 -0.02 0.60 16 42 H 0.07 0.81 5.95 -2.39 -0.01 0.79 16 43 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.09 0.76 8.07 -2.39 -0.02 0.75 16 45 H 0.07 1.18 7.28 -2.39 -0.02 1.16 16 46 H 0.18 4.14 6.10 -2.91 -0.02 4.12 16 47 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 48 H 0.03 1.55 6.20 -2.39 -0.01 1.53 16 49 H 0.36 18.45 5.25 -92.71 -0.49 17.96 16 50 H 0.25 16.82 8.31 -92.71 -0.77 16.05 16 51 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -87.35 396.79 3.29 -84.06 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.37 Total: 27.03 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 8.48 Total: 20.53 kcal Atomic # 7 Polarization: -152.37 SS G_CDS: -7.43 Total: -159.80 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.04 Total: -25.41 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 1.90 Total: 53.60 kcal Total: -87.35 3.29 -84.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316701842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.501 kcal (2) G-P(sol) polarization free energy of solvation -87.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds