Wall clock time and date at job start Wed Apr 1 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47546 * 2 1 4 4 C 1.50701 * 109.46668 * 119.99625 * 2 1 3 5 5 O 1.21288 * 120.00292 * 119.99996 * 4 2 1 6 6 N 1.34777 * 120.00115 * 299.99906 * 4 2 1 7 7 C 1.46500 * 120.00376 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47473 * 180.02562 * 7 6 4 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.46851 * 110.99898 * 45.79011 * 9 8 7 11 11 C 1.53039 * 109.52490 * 185.83779 * 10 9 8 12 12 C 1.53116 * 109.27694 * 300.82213 * 11 10 9 13 13 N 1.46502 * 109.57778 * 177.58661 * 12 11 10 14 14 C 1.36939 * 119.99605 * 85.28164 * 13 12 11 15 15 H 1.07995 * 120.00170 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00179 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47049 * 59.99899 * 18 16 14 20 20 H 1.48498 * 109.47221 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47407 * 300.00287 * 18 16 14 22 22 C 1.53121 * 109.16460 * 57.65281 * 12 11 10 23 23 C 1.46842 * 111.00041 * 169.99637 * 9 8 7 24 24 C 1.50695 * 109.47381 * 239.99170 * 2 1 3 25 25 C 1.38678 * 120.41653 * 119.72511 * 24 2 1 26 26 C 1.38633 * 118.41768 * 179.78473 * 25 24 2 27 27 C 1.38218 * 119.16281 * 0.51168 * 26 25 24 28 28 N 1.31861 * 120.76551 * 359.72589 * 27 26 25 29 29 C 1.31886 * 121.72278 * 0.02562 * 28 27 26 30 30 H 1.08992 * 109.47346 * 300.00885 * 1 2 3 31 31 H 1.09004 * 109.46785 * 60.00507 * 1 2 3 32 32 H 1.09001 * 109.47364 * 180.02562 * 1 2 3 33 33 H 0.97004 * 120.00228 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47129 * 59.99747 * 7 6 4 35 35 H 1.08998 * 109.46845 * 300.00553 * 7 6 4 36 36 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 37 37 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 38 38 H 1.08996 * 109.46471 * 305.85679 * 10 9 8 39 39 H 1.09004 * 109.45929 * 65.82278 * 10 9 8 40 40 H 1.08992 * 109.50519 * 180.88071 * 11 10 9 41 41 H 1.09003 * 109.50071 * 60.76201 * 11 10 9 42 42 H 1.08999 * 109.52546 * 297.75036 * 12 11 10 43 43 H 0.96996 * 119.99915 * 265.29224 * 13 12 11 44 44 H 0.97003 * 119.99936 * 180.02562 * 17 16 14 45 45 H 1.08994 * 109.50961 * 182.40006 * 22 12 11 46 46 H 1.09004 * 109.50186 * 62.28373 * 22 12 11 47 47 H 1.08996 * 109.46789 * 294.18136 * 23 9 8 48 48 H 1.09007 * 109.45854 * 54.15867 * 23 9 8 49 49 H 1.07997 * 120.78933 * 0.02566 * 25 24 2 50 50 H 1.08000 * 120.41446 * 180.21978 * 26 25 24 51 51 H 1.08002 * 119.62327 * 179.74925 * 27 26 25 52 52 H 1.07996 * 119.61699 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.1952 -0.9400 3.6509 8 6 1.6846 -0.2191 4.9001 9 7 2.1741 -0.9115 6.0996 10 6 3.6027 -1.2290 5.9777 11 6 4.0427 -2.0742 7.1753 12 6 3.7823 -1.2946 8.4672 13 7 4.1477 -2.1203 9.6209 14 6 5.4443 -2.1464 10.0609 15 1 6.1972 -1.5580 9.5577 16 6 5.7907 -2.9290 11.1538 17 7 4.8731 -3.6465 11.7667 18 14 7.5590 -2.9641 11.7545 19 1 7.9754 -1.5941 12.1480 20 1 7.6657 -3.8693 12.9268 21 1 8.4418 -3.4563 10.6665 22 6 2.2962 -0.9344 8.5460 23 6 1.9068 -0.1223 7.3087 24 6 2.0323 -0.7105 -1.2303 25 6 2.8255 -0.0434 -2.1517 26 6 3.2685 -0.7383 -3.2665 27 6 2.8988 -2.0605 -3.4268 28 7 2.1390 -2.6616 -2.5323 29 6 1.7035 -2.0332 -1.4577 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.1486 0.5387 2.5436 34 1 3.2852 -0.9396 3.6508 35 1 1.8323 -1.9678 3.6511 36 1 0.5945 -0.2198 4.8999 37 1 2.0472 0.8088 4.9000 38 1 3.7735 -1.7869 5.0571 39 1 4.1794 -0.3044 5.9542 40 1 5.1065 -2.2965 7.0926 41 1 3.4760 -3.0052 7.1915 42 1 4.3787 -0.3823 8.4686 43 1 3.4714 -2.6485 10.0729 44 1 5.1151 -4.1931 12.5306 45 1 2.1122 -0.3425 9.4426 46 1 1.7020 -1.8475 8.5838 47 1 2.4915 0.7971 7.2790 48 1 0.8458 0.1234 7.3548 49 1 3.0948 0.9917 -2.0024 50 1 3.8907 -0.2513 -4.0027 51 1 3.2364 -2.6077 -4.2946 52 1 1.0825 -2.5585 -0.7472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325806616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:18 Heat of formation + Delta-G solvation = 11.205519 kcal Electronic energy + Delta-G solvation = -29514.694379 eV Core-core repulsion = 25514.052168 eV Total energy + Delta-G solvation = -4000.642210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.01666 -39.74934 -38.87409 -35.89160 -35.05261 -34.44101 -32.53298 -32.26496 -30.67101 -30.29959 -29.64332 -27.71403 -25.45559 -24.42696 -23.90995 -23.32225 -22.89321 -21.93704 -21.06173 -20.38101 -19.30739 -17.66648 -17.52003 -17.06441 -16.72147 -16.46706 -15.82006 -15.72758 -15.11740 -14.80733 -14.63443 -14.58083 -14.27569 -14.11501 -13.80579 -13.75620 -13.49361 -13.43431 -13.27884 -13.08084 -12.91767 -12.77364 -12.44144 -12.06486 -11.91513 -11.82513 -11.60080 -11.52283 -11.17008 -10.84864 -10.75887 -10.56795 -10.30194 -10.22856 -10.19375 -9.99591 -9.75781 -9.71330 -9.56558 -9.35656 -9.31435 -8.83823 -8.25242 -6.91940 -5.73502 -3.01973 0.74870 0.94533 2.29375 2.73585 3.45510 3.49967 3.50730 3.50943 3.91681 4.00311 4.21993 4.28148 4.46864 4.50529 4.58702 4.61077 4.66883 4.67819 4.83408 4.85907 5.05969 5.15444 5.18869 5.21445 5.28663 5.33731 5.43003 5.43664 5.52141 5.58713 5.61971 5.67282 5.72720 5.73026 5.76860 5.86430 5.89283 6.04987 6.06970 6.15294 6.28830 6.34615 6.49448 6.52402 6.67370 6.89406 7.07520 7.12996 7.22816 7.25770 7.67382 7.71760 7.87898 8.45290 9.56171 10.14985 10.49913 11.49102 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.001666 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.414710 B =16800.673522 C =17791.810435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 H 0.107 0.893 4 C 0.515 3.485 5 O -0.526 6.526 6 N -0.727 5.727 7 C 0.113 3.887 8 C 0.046 3.954 9 N -0.531 5.531 10 C 0.050 3.950 11 C -0.132 4.132 12 C 0.178 3.822 13 N -0.724 5.724 14 C -0.238 4.238 15 H 0.068 0.932 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.121 4.121 23 C 0.064 3.936 24 C -0.121 4.121 25 C -0.069 4.069 26 C -0.176 4.176 27 C 0.097 3.903 28 N -0.485 5.485 29 C 0.135 3.865 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.069 0.931 49 H 0.133 0.867 50 H 0.135 0.865 51 H 0.155 0.845 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 13.292 -29.290 34.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 H 0.125 0.875 4 C 0.301 3.699 5 O -0.402 6.402 6 N -0.380 5.380 7 C -0.010 4.010 8 C -0.082 4.082 9 N -0.257 5.257 10 C -0.078 4.078 11 C -0.173 4.173 12 C 0.067 3.933 13 N -0.364 5.364 14 C -0.370 4.370 15 H 0.086 0.914 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.160 4.160 23 C -0.064 4.064 24 C -0.124 4.124 25 C -0.095 4.095 26 C -0.196 4.196 27 C -0.060 4.060 28 N -0.193 5.193 29 C -0.023 4.023 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.088 0.912 49 H 0.151 0.849 50 H 0.153 0.847 51 H 0.172 0.828 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.529 11.248 -29.365 33.493 hybrid contribution 1.325 1.849 0.656 2.367 sum -10.204 13.097 -28.710 33.165 Atomic orbital electron populations 1.21825 0.91530 1.03481 1.03192 1.20215 0.97977 1.00216 0.90400 0.87499 1.20410 0.80450 0.84792 0.84298 1.90781 1.37003 1.25838 1.86530 1.45921 1.54063 1.32281 1.05707 1.21582 0.99762 0.97143 0.82507 1.22216 1.00712 0.95620 0.89699 1.61992 1.17910 1.44572 1.01203 1.22316 0.86488 0.98847 1.00173 1.22315 1.00960 0.99472 0.94543 1.20234 0.92210 0.93263 0.87556 1.42408 1.08320 1.53368 1.32329 1.19193 0.86178 1.22019 1.09560 0.91372 1.24735 0.97560 0.99940 0.98768 1.69655 1.32074 1.32675 1.23729 0.86286 0.84725 0.77219 0.78064 1.21371 1.21704 1.21302 1.21861 0.98233 1.00276 0.95616 1.22057 1.00124 0.94373 0.89818 1.20297 0.99963 0.96046 0.96047 1.21456 0.94616 1.00121 0.93266 1.22099 1.02038 0.96343 0.99100 1.22813 0.93491 0.92295 0.97369 1.67740 1.10469 1.38407 1.02724 1.22524 0.95619 0.90804 0.93319 0.91306 0.91024 0.91506 0.76675 0.90792 0.90223 0.90290 0.94572 0.90870 0.95316 0.91719 0.91631 0.94136 0.78237 0.93508 0.91469 0.91242 0.95068 0.91217 0.84902 0.84731 0.82799 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 8.91 37.16 0.33 -0.24 16 2 C -0.07 -0.40 2.92 -92.93 -0.27 -0.67 16 3 H 0.11 0.41 7.93 -51.93 -0.41 -0.01 16 4 C 0.52 4.81 7.03 -10.98 -0.08 4.73 16 5 O -0.53 -7.43 15.13 5.55 0.08 -7.34 16 6 N -0.73 -5.43 5.45 -60.29 -0.33 -5.76 16 7 C 0.11 1.13 4.92 -4.04 -0.02 1.11 16 8 C 0.05 0.43 5.39 -3.83 -0.02 0.41 16 9 N -0.53 -6.86 4.81 -234.67 -1.13 -7.99 16 10 C 0.05 0.72 4.85 -3.83 -0.02 0.70 16 11 C -0.13 -2.42 5.68 -26.65 -0.15 -2.57 16 12 C 0.18 3.54 2.84 -67.81 -0.19 3.35 16 13 N -0.72 -18.31 5.13 -53.30 -0.27 -18.58 16 14 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 18 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.12 -2.00 5.57 -26.65 -0.15 -2.15 16 23 C 0.06 0.84 5.42 -3.83 -0.02 0.82 16 24 C -0.12 -1.00 4.40 -104.48 -0.46 -1.46 16 25 C -0.07 -0.48 9.81 -39.27 -0.39 -0.86 16 26 C -0.18 -1.20 10.11 -39.44 -0.40 -1.60 16 27 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 28 N -0.49 -5.39 10.36 -13.25 -0.14 -5.53 16 29 C 0.13 1.38 9.13 -17.55 -0.16 1.22 16 30 H 0.07 0.17 7.56 -51.93 -0.39 -0.23 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.33 7.41 -51.93 -0.39 -0.05 16 33 H 0.40 1.71 7.89 -40.82 -0.32 1.38 16 34 H 0.07 0.86 6.21 -51.93 -0.32 0.54 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 38 H 0.07 1.01 5.81 -51.93 -0.30 0.71 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.38 10.35 7.80 -40.82 -0.32 10.03 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 49 H 0.13 0.57 8.00 -52.49 -0.42 0.15 16 50 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 51 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 52 H 0.15 1.50 7.53 -52.49 -0.40 1.10 16 LS Contribution 414.36 15.07 6.24 6.24 Total: -1.00 -34.99 414.36 -11.00 -45.99 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.73 Total: 6.99 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.44 Total: -3.92 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -1.14 Total: -65.57 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.08 Total: -7.34 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.99 -11.00 -45.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325806616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.192 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds