Wall clock time and date at job start Wed Apr 1 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47546 * 2 1 4 4 C 1.50701 * 109.46668 * 119.99625 * 2 1 3 5 5 O 1.21288 * 120.00292 * 119.99996 * 4 2 1 6 6 N 1.34777 * 120.00115 * 299.99906 * 4 2 1 7 7 C 1.46500 * 120.00376 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47473 * 180.02562 * 7 6 4 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.46851 * 110.99898 * 45.79011 * 9 8 7 11 11 C 1.53039 * 109.52490 * 185.83779 * 10 9 8 12 12 C 1.53116 * 109.27694 * 300.82213 * 11 10 9 13 13 N 1.46502 * 109.57778 * 177.58661 * 12 11 10 14 14 C 1.36939 * 119.99605 * 85.28164 * 13 12 11 15 15 H 1.07995 * 120.00170 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00179 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47049 * 59.99899 * 18 16 14 20 20 H 1.48498 * 109.47221 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47407 * 300.00287 * 18 16 14 22 22 C 1.53121 * 109.16460 * 57.65281 * 12 11 10 23 23 C 1.46842 * 111.00041 * 169.99637 * 9 8 7 24 24 C 1.50695 * 109.47381 * 239.99170 * 2 1 3 25 25 C 1.38678 * 120.41653 * 119.72511 * 24 2 1 26 26 C 1.38633 * 118.41768 * 179.78473 * 25 24 2 27 27 C 1.38218 * 119.16281 * 0.51168 * 26 25 24 28 28 N 1.31861 * 120.76551 * 359.72589 * 27 26 25 29 29 C 1.31886 * 121.72278 * 0.02562 * 28 27 26 30 30 H 1.08992 * 109.47346 * 300.00885 * 1 2 3 31 31 H 1.09004 * 109.46785 * 60.00507 * 1 2 3 32 32 H 1.09001 * 109.47364 * 180.02562 * 1 2 3 33 33 H 0.97004 * 120.00228 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47129 * 59.99747 * 7 6 4 35 35 H 1.08998 * 109.46845 * 300.00553 * 7 6 4 36 36 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 37 37 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 38 38 H 1.08996 * 109.46471 * 305.85679 * 10 9 8 39 39 H 1.09004 * 109.45929 * 65.82278 * 10 9 8 40 40 H 1.08992 * 109.50519 * 180.88071 * 11 10 9 41 41 H 1.09003 * 109.50071 * 60.76201 * 11 10 9 42 42 H 1.08999 * 109.52546 * 297.75036 * 12 11 10 43 43 H 0.96996 * 119.99915 * 265.29224 * 13 12 11 44 44 H 0.97003 * 119.99936 * 180.02562 * 17 16 14 45 45 H 1.08994 * 109.50961 * 182.40006 * 22 12 11 46 46 H 1.09004 * 109.50186 * 62.28373 * 22 12 11 47 47 H 1.08996 * 109.46789 * 294.18136 * 23 9 8 48 48 H 1.09007 * 109.45854 * 54.15867 * 23 9 8 49 49 H 1.07997 * 120.78933 * 0.02566 * 25 24 2 50 50 H 1.08000 * 120.41446 * 180.21978 * 26 25 24 51 51 H 1.08002 * 119.62327 * 179.74925 * 27 26 25 52 52 H 1.07996 * 119.61699 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.1952 -0.9400 3.6509 8 6 1.6846 -0.2191 4.9001 9 7 2.1741 -0.9115 6.0996 10 6 3.6027 -1.2290 5.9777 11 6 4.0427 -2.0742 7.1753 12 6 3.7823 -1.2946 8.4672 13 7 4.1477 -2.1203 9.6209 14 6 5.4443 -2.1464 10.0609 15 1 6.1972 -1.5580 9.5577 16 6 5.7907 -2.9290 11.1538 17 7 4.8731 -3.6465 11.7667 18 14 7.5590 -2.9641 11.7545 19 1 7.9754 -1.5941 12.1480 20 1 7.6657 -3.8693 12.9268 21 1 8.4418 -3.4563 10.6665 22 6 2.2962 -0.9344 8.5460 23 6 1.9068 -0.1223 7.3087 24 6 2.0323 -0.7105 -1.2303 25 6 2.8255 -0.0434 -2.1517 26 6 3.2685 -0.7383 -3.2665 27 6 2.8988 -2.0605 -3.4268 28 7 2.1390 -2.6616 -2.5323 29 6 1.7035 -2.0332 -1.4577 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.1486 0.5387 2.5436 34 1 3.2852 -0.9396 3.6508 35 1 1.8323 -1.9678 3.6511 36 1 0.5945 -0.2198 4.8999 37 1 2.0472 0.8088 4.9000 38 1 3.7735 -1.7869 5.0571 39 1 4.1794 -0.3044 5.9542 40 1 5.1065 -2.2965 7.0926 41 1 3.4760 -3.0052 7.1915 42 1 4.3787 -0.3823 8.4686 43 1 3.4714 -2.6485 10.0729 44 1 5.1151 -4.1931 12.5306 45 1 2.1122 -0.3425 9.4426 46 1 1.7020 -1.8475 8.5838 47 1 2.4915 0.7971 7.2790 48 1 0.8458 0.1234 7.3548 49 1 3.0948 0.9917 -2.0024 50 1 3.8907 -0.2513 -4.0027 51 1 3.2364 -2.6077 -4.2946 52 1 1.0825 -2.5585 -0.7472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325806616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:17 Heat of formation + Delta-G solvation = -14.676219 kcal Electronic energy + Delta-G solvation = -29515.816695 eV Core-core repulsion = 25514.052168 eV Total energy + Delta-G solvation = -4001.764527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.64836 -40.52996 -39.98054 -37.15047 -35.75494 -35.61863 -33.99074 -33.05841 -31.91676 -31.53206 -30.65465 -28.83923 -26.28522 -25.74564 -24.70281 -24.49746 -23.80321 -23.08325 -22.14565 -21.08404 -20.71685 -19.10073 -18.30382 -18.09900 -17.58272 -17.10553 -16.89581 -16.60966 -16.36149 -15.90858 -15.57918 -15.53065 -15.40427 -15.24571 -14.99188 -14.73560 -14.59011 -14.41465 -14.16892 -13.98629 -13.94898 -13.54717 -13.24921 -13.12531 -13.00249 -12.85291 -12.69090 -12.54175 -12.41007 -12.29566 -12.22823 -12.19612 -12.04638 -11.76345 -11.51069 -11.17700 -10.96636 -10.84579 -10.65321 -10.38124 -10.11810 -9.90464 -9.25080 -8.99709 -7.94296 -5.22646 0.16238 0.37690 1.45242 1.48371 1.54438 1.60207 2.05854 2.55457 2.87909 3.06891 3.38087 3.40845 3.65795 3.74401 3.79055 3.82457 3.99404 4.03621 4.05550 4.09133 4.14986 4.20048 4.22841 4.33342 4.36583 4.41487 4.50486 4.55288 4.65042 4.69992 4.74716 4.80219 4.87358 4.89646 4.92733 4.94176 4.97555 4.99245 5.11857 5.19564 5.19739 5.23059 5.34472 5.39552 5.43725 5.48767 5.60172 5.79618 6.10053 6.17499 6.28224 6.53609 7.05419 7.24544 7.33436 8.10932 8.34126 9.28989 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.001666 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.414710 B =16800.673522 C =17791.810435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 H 0.141 0.859 4 C 0.512 3.488 5 O -0.582 6.582 6 N -0.710 5.710 7 C 0.120 3.880 8 C 0.054 3.946 9 N -0.545 5.545 10 C 0.063 3.937 11 C -0.124 4.124 12 C 0.171 3.829 13 N -0.738 5.738 14 C -0.240 4.240 15 H 0.072 0.928 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.972 3.028 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.280 1.280 22 C -0.114 4.114 23 C 0.073 3.927 24 C -0.128 4.128 25 C -0.072 4.072 26 C -0.172 4.172 27 C 0.077 3.923 28 N -0.524 5.524 29 C 0.108 3.892 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.419 0.581 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.372 0.628 44 H 0.250 0.750 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.041 0.959 48 H 0.100 0.900 49 H 0.167 0.833 50 H 0.166 0.834 51 H 0.173 0.827 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 16.906 -31.046 37.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 H 0.159 0.841 4 C 0.299 3.701 5 O -0.461 6.461 6 N -0.363 5.363 7 C -0.004 4.004 8 C -0.073 4.073 9 N -0.271 5.271 10 C -0.065 4.065 11 C -0.165 4.165 12 C 0.063 3.937 13 N -0.377 5.377 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.270 4.270 17 N -0.620 5.620 18 Si 0.801 3.199 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.207 1.207 22 C -0.152 4.152 23 C -0.055 4.055 24 C -0.130 4.130 25 C -0.098 4.098 26 C -0.191 4.191 27 C -0.079 4.079 28 N -0.233 5.233 29 C -0.049 4.049 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.257 0.743 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.118 0.882 49 H 0.184 0.816 50 H 0.184 0.816 51 H 0.190 0.810 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.024 14.939 -31.160 36.588 hybrid contribution 1.443 0.738 1.112 1.966 sum -10.580 15.677 -30.049 35.505 Atomic orbital electron populations 1.21847 0.89898 1.03012 1.04967 1.20277 0.99140 1.00876 0.87501 0.84127 1.21055 0.79427 0.84092 0.85495 1.90767 1.39652 1.28382 1.87316 1.45722 1.53634 1.32469 1.04513 1.21331 0.98661 0.96540 0.83912 1.22232 1.01899 0.95884 0.87304 1.61910 1.16492 1.45952 1.02731 1.22084 0.87971 0.98403 0.98074 1.22110 0.99391 0.99223 0.95736 1.20491 0.94641 0.92258 0.86314 1.42639 1.07247 1.53989 1.33825 1.19571 0.87420 1.21078 1.09104 0.90963 1.25552 1.01571 1.00334 0.99492 1.69817 1.33980 1.33923 1.24311 0.85238 0.80062 0.77383 0.77255 1.20276 1.22128 1.20676 1.21750 0.95200 1.00396 0.97882 1.21996 1.02025 0.93613 0.87892 1.20537 0.99932 0.95372 0.97156 1.21914 0.93584 1.01611 0.92689 1.22479 1.01397 0.95622 0.99607 1.23250 0.93480 0.93602 0.97596 1.67650 1.11971 1.39911 1.03786 1.22490 0.96776 0.92148 0.93467 0.88999 0.89733 0.93172 0.74306 0.92640 0.92529 0.87942 0.92456 0.90378 0.94525 0.93921 0.93551 0.94595 0.79670 0.94093 0.91634 0.92425 0.94032 0.88217 0.81587 0.81614 0.81013 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.91 71.98 0.64 -0.13 16 2 C -0.06 -0.54 2.92 -12.29 -0.04 -0.58 16 3 H 0.14 0.43 7.93 -2.39 -0.02 0.41 16 4 C 0.51 8.92 7.03 87.66 0.62 9.54 16 5 O -0.58 -16.82 15.13 -3.05 -0.05 -16.86 16 6 N -0.71 -8.86 5.45 -463.06 -2.52 -11.38 16 7 C 0.12 2.19 4.92 86.38 0.43 2.61 16 8 C 0.05 0.83 5.39 86.30 0.46 1.29 16 9 N -0.55 -12.80 4.81 -896.35 -4.31 -17.11 16 10 C 0.06 1.76 4.85 86.33 0.42 2.18 16 11 C -0.12 -4.63 5.68 30.65 0.17 -4.46 16 12 C 0.17 6.89 2.84 45.07 0.13 7.02 16 13 N -0.74 -38.30 5.13 -322.56 -1.65 -39.96 16 14 C -0.24 -13.65 9.93 84.03 0.83 -12.81 16 15 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 16 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 17 N -0.97 -60.60 13.06 21.65 0.28 -60.31 16 18 Si 0.97 47.13 29.55 68.60 2.03 49.15 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 22 C -0.11 -3.66 5.57 30.65 0.17 -3.49 16 23 C 0.07 1.68 5.42 86.33 0.47 2.15 16 24 C -0.13 -1.97 4.40 -19.77 -0.09 -2.05 16 25 C -0.07 -0.83 9.81 22.47 0.22 -0.61 16 26 C -0.17 -2.00 10.11 22.36 0.23 -1.78 16 27 C 0.08 1.28 11.18 84.68 0.95 2.23 16 28 N -0.52 -12.24 10.36 -195.85 -2.03 -14.27 16 29 C 0.11 2.33 9.13 84.67 0.77 3.10 16 30 H 0.09 0.08 7.56 -2.39 -0.02 0.06 16 31 H 0.08 0.29 8.14 -2.38 -0.02 0.28 16 32 H 0.05 0.46 7.41 -2.39 -0.02 0.45 16 33 H 0.42 1.86 7.89 -92.71 -0.73 1.12 16 34 H 0.06 1.24 6.21 -2.39 -0.01 1.22 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 38 H 0.08 2.13 5.81 -2.39 -0.01 2.11 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 43 H 0.37 20.78 7.80 -92.71 -0.72 20.06 16 44 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 48 H 0.10 1.79 8.12 -2.38 -0.02 1.77 16 49 H 0.17 0.71 8.00 -2.91 -0.02 0.69 16 50 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 51 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 52 H 0.14 3.07 7.53 -2.91 -0.02 3.04 16 Total: -1.00 -80.69 414.36 -1.93 -82.62 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.54 Total: 28.00 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 6.85 Total: 0.12 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -10.23 Total: -143.04 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.05 Total: -16.86 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -80.69 -1.93 -82.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325806616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.944 kcal (2) G-P(sol) polarization free energy of solvation -80.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds