Wall clock time and date at job start Wed Apr 1 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.49334 * 2 1 4 4 C 1.53241 * 109.49455 * 239.94891 * 2 1 3 5 5 N 1.47080 * 108.52120 * 186.21400 * 4 2 1 6 6 C 1.34785 * 120.87951 * 231.18575 * 5 4 2 7 7 O 1.21278 * 119.99611 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00043 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47088 * 320.00021 * 8 6 5 10 10 N 1.46893 * 109.46932 * 199.99899 * 8 6 5 11 11 C 1.52998 * 109.46852 * 79.99777 * 8 6 5 12 12 C 1.53007 * 109.46810 * 184.99907 * 11 8 6 13 13 C 1.53003 * 109.46960 * 180.02562 * 12 11 8 14 14 C 1.50696 * 109.46688 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00758 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99375 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00489 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99571 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47228 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46773 * 120.00157 * 18 16 14 21 21 H 1.48505 * 109.47268 * 239.99700 * 18 16 14 22 22 C 1.47077 * 118.24040 * 51.45323 * 5 4 2 23 23 C 1.53698 * 108.27685 * 308.48422 * 22 5 4 24 24 N 1.46899 * 109.25455 * 54.08349 * 23 22 5 25 25 C 1.39166 * 111.00052 * 172.60375 * 24 23 22 26 26 C 1.39475 * 120.86292 * 71.11305 * 25 24 23 27 27 C 1.37894 * 119.06523 * 179.73143 * 26 25 24 28 28 N 1.31994 * 120.84615 * 0.55129 * 27 26 25 29 29 C 1.31992 * 121.90625 * 359.71788 * 28 27 26 30 30 C 1.37895 * 120.84496 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47248 * 177.89727 * 1 2 3 32 32 H 1.08994 * 109.47527 * 297.90072 * 1 2 3 33 33 H 1.09003 * 109.46980 * 57.90627 * 1 2 3 34 34 H 1.08999 * 109.63126 * 66.49925 * 4 2 1 35 35 H 1.09006 * 109.79109 * 306.01104 * 4 2 1 36 36 H 1.00901 * 111.00358 * 300.00335 * 10 8 6 37 37 H 1.00907 * 111.00222 * 63.96013 * 10 8 6 38 38 H 1.08993 * 109.47592 * 304.99861 * 11 8 6 39 39 H 1.09005 * 109.46941 * 65.00315 * 11 8 6 40 40 H 1.08995 * 109.46791 * 299.99829 * 12 11 8 41 41 H 1.08994 * 109.46799 * 60.00033 * 12 11 8 42 42 H 1.09001 * 109.46943 * 300.00021 * 13 12 11 43 43 H 1.08995 * 109.47227 * 59.99554 * 13 12 11 44 44 H 0.97001 * 120.00295 * 180.02562 * 17 16 14 45 45 H 1.08998 * 109.62838 * 68.25182 * 22 5 4 46 46 H 1.09000 * 109.63099 * 188.83174 * 22 5 4 47 47 H 1.08992 * 109.64931 * 294.08259 * 23 22 5 48 48 H 1.09001 * 109.44378 * 173.95617 * 23 22 5 49 49 H 1.07996 * 120.46456 * 359.96952 * 26 25 24 50 50 H 1.08001 * 119.57457 * 180.24722 * 27 26 25 51 51 H 1.08005 * 119.58148 * 180.02562 * 29 28 27 52 52 H 1.08003 * 120.46850 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2504 5 7 3.5042 -0.8429 -1.1555 6 6 4.2978 -0.4485 -2.1711 7 8 3.8074 0.0118 -3.1803 8 6 5.7944 -0.5794 -2.0525 9 1 6.1038 -0.3104 -1.0425 10 7 6.4424 0.3177 -3.0184 11 6 6.2045 -2.0243 -2.3436 12 6 7.7067 -2.1866 -2.1021 13 6 8.1170 -3.6314 -2.3939 14 6 9.5963 -3.7913 -2.1554 15 1 10.1851 -2.9469 -1.8288 16 6 10.1982 -5.0158 -2.3541 17 7 9.4812 -6.0442 -2.7513 18 14 12.0321 -5.2139 -2.0592 19 1 12.6060 -3.9163 -1.6210 20 1 12.2564 -6.2360 -1.0055 21 1 12.6919 -5.6468 -3.3172 22 6 4.0778 -1.4098 0.0744 23 6 3.4866 -0.6539 1.2750 24 7 2.0202 -0.6941 1.1983 25 6 1.4458 -0.1659 2.3506 26 6 1.5001 1.2026 2.6145 27 6 0.9138 1.6868 3.7648 28 7 0.3172 0.8722 4.6149 29 6 0.2496 -0.4290 4.4038 30 6 0.8055 -0.9918 3.2743 31 1 -0.3634 -1.0270 -0.0377 32 1 -0.3634 0.4808 0.9081 33 1 -0.3633 0.5460 -0.8706 34 1 1.7776 -0.1498 -2.1389 35 1 1.5960 -1.7165 -1.3103 36 1 6.1714 0.0887 -3.9629 37 1 6.2390 1.2834 -2.8079 38 1 5.6559 -2.6975 -1.6851 39 1 5.9754 -2.2649 -3.3818 40 1 8.2553 -1.5134 -2.7608 41 1 7.9358 -1.9460 -1.0640 42 1 7.5683 -4.3049 -1.7355 43 1 7.8878 -3.8716 -3.4320 44 1 9.9046 -6.9058 -2.8907 45 1 3.8242 -2.4676 0.1430 46 1 5.1612 -1.2902 0.0622 47 1 3.8234 0.3826 1.2574 48 1 3.8155 -1.1277 2.1998 49 1 1.9910 1.8740 1.9256 50 1 0.9474 2.7456 3.9753 51 1 -0.2482 -1.0609 5.1244 52 1 0.7462 -2.0572 3.1074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353110749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:36 Heat of formation + Delta-G solvation = 5.380629 kcal Electronic energy + Delta-G solvation = -30692.258196 eV Core-core repulsion = 26691.363400 eV Total energy + Delta-G solvation = -4000.894796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.37437 -40.26452 -38.59529 -35.84577 -35.37994 -33.46897 -33.11711 -31.69285 -31.40681 -31.33697 -28.38360 -28.12714 -26.93134 -24.73445 -24.00264 -23.40775 -23.10366 -22.18637 -20.61173 -20.03859 -19.14439 -18.08401 -17.16595 -16.74001 -16.53070 -16.34812 -16.06431 -16.01935 -15.77865 -15.18701 -14.90561 -14.61578 -14.47091 -14.38266 -14.21462 -14.01312 -13.84009 -13.33936 -13.04377 -12.96878 -12.57673 -12.48060 -12.30917 -12.19179 -11.91875 -11.75438 -11.72608 -11.52899 -11.43769 -11.16304 -10.77789 -10.60962 -10.43628 -10.22508 -9.96559 -9.90611 -9.63300 -9.60807 -9.26377 -9.23616 -9.04886 -8.80813 -8.60283 -8.31126 -5.96509 -3.98112 0.68364 0.75602 2.45992 2.68457 3.11914 3.32991 3.36128 3.40571 3.45022 4.04329 4.16928 4.33407 4.39997 4.46101 4.49639 4.54425 4.62782 4.64110 4.73018 4.75535 4.83602 4.87477 4.99949 5.11998 5.18967 5.22123 5.29793 5.34285 5.35431 5.38160 5.39466 5.44844 5.50197 5.59885 5.70305 5.82891 5.88694 6.05932 6.13429 6.17994 6.34542 6.40273 6.72176 6.78643 6.98194 7.02287 7.20424 7.23298 7.46612 7.55825 7.73649 7.88517 7.98432 8.04968 8.48189 9.09803 9.65795 11.14903 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.002169 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.629806 B =12908.997739 C =14042.218982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.051 0.949 4 C 0.120 3.880 5 N -0.614 5.614 6 C 0.486 3.514 7 O -0.549 6.549 8 C 0.077 3.923 9 H 0.100 0.900 10 N -0.811 5.811 11 C -0.104 4.104 12 C -0.099 4.099 13 C 0.019 3.981 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.054 3.946 17 N -0.897 5.897 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.108 3.892 23 C 0.047 3.953 24 N -0.500 5.500 25 C 0.145 3.855 26 C -0.206 4.206 27 C 0.108 3.892 28 N -0.491 5.491 29 C 0.105 3.895 30 C -0.151 4.151 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.351 0.649 37 H 0.337 0.663 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.012 0.988 43 H 0.014 0.986 44 H 0.259 0.741 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.046 0.954 48 H 0.094 0.906 49 H 0.129 0.871 50 H 0.154 0.846 51 H 0.159 0.841 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.232 14.442 11.675 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.069 0.931 4 C -0.004 4.004 5 N -0.348 5.348 6 C 0.273 3.727 7 O -0.427 6.427 8 C -0.038 4.038 9 H 0.118 0.882 10 N -0.339 5.339 11 C -0.143 4.143 12 C -0.137 4.137 13 C -0.018 4.018 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.015 4.015 23 C -0.080 4.080 24 N -0.222 5.222 25 C 0.043 3.957 26 C -0.228 4.228 27 C -0.049 4.049 28 N -0.200 5.200 29 C -0.052 4.052 30 C -0.172 4.172 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.165 0.835 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.121 0.879 47 H 0.065 0.935 48 H 0.113 0.887 49 H 0.147 0.853 50 H 0.171 0.829 51 H 0.176 0.824 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.249 14.058 12.022 28.173 hybrid contribution 0.558 0.475 -0.746 1.046 sum -20.691 14.532 11.277 27.685 Atomic orbital electron populations 1.21853 0.93015 1.03263 1.02371 1.22086 0.96172 0.95876 0.89232 0.93092 1.21714 0.80094 1.01479 0.97085 1.48304 1.06502 1.62830 1.17146 1.22600 0.91630 0.76133 0.82306 1.90660 1.76596 1.45856 1.29580 1.21805 0.85721 0.97595 0.98719 0.88243 1.59056 1.61926 1.06254 1.06669 1.21679 1.00129 0.90397 1.02060 1.21539 0.91116 1.00714 1.00325 1.19120 0.95970 0.89890 0.96785 1.21307 0.93986 0.95359 1.44741 0.92619 1.25035 0.97991 0.96138 0.95448 1.69974 1.35493 1.00972 1.47228 0.86570 0.85798 0.78054 0.77779 1.19728 1.21103 1.21086 1.22094 0.99120 0.98455 0.81855 1.22677 0.85122 1.00199 0.99963 1.59500 1.07127 1.55359 1.00209 1.19049 0.94373 0.91121 0.91165 1.22685 1.03265 0.96774 1.00080 1.22613 0.92740 0.99832 0.89668 1.67734 1.16247 1.05012 1.31049 1.22767 0.95720 0.91215 0.95470 1.22127 0.98685 1.01728 0.94640 0.91192 0.92249 0.91373 0.88529 0.90494 0.83512 0.85100 0.91828 0.91861 0.91824 0.93724 0.96945 0.96791 0.93158 0.89579 0.87925 0.93530 0.88734 0.85297 0.82900 0.82416 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.96 37.15 0.33 -0.68 16 2 C 0.07 0.59 2.18 -67.59 -0.15 0.44 16 3 H 0.05 0.44 7.18 -51.93 -0.37 0.07 16 4 C 0.12 1.16 5.88 -3.60 -0.02 1.14 16 5 N -0.61 -6.62 3.00 -172.18 -0.52 -7.14 16 6 C 0.49 6.46 6.95 -10.98 -0.08 6.38 16 7 O -0.55 -8.87 15.70 5.56 0.09 -8.78 16 8 C 0.08 1.02 2.30 -68.87 -0.16 0.86 16 9 H 0.10 1.16 6.53 -51.93 -0.34 0.82 16 10 N -0.81 -10.81 8.44 -5.66 -0.05 -10.85 16 11 C -0.10 -1.67 4.63 -26.73 -0.12 -1.80 16 12 C -0.10 -1.96 5.04 -26.73 -0.13 -2.10 16 13 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.11 0.97 5.75 -3.36 -0.02 0.95 16 23 C 0.05 0.36 5.41 -3.46 -0.02 0.35 16 24 N -0.50 -3.93 4.47 -162.82 -0.73 -4.66 16 25 C 0.15 1.12 3.19 -83.61 -0.27 0.85 16 26 C -0.21 -1.51 8.40 -39.25 -0.33 -1.84 16 27 C 0.11 0.82 11.17 -17.61 -0.20 0.62 16 28 N -0.49 -4.36 10.36 -13.35 -0.14 -4.50 16 29 C 0.11 0.76 11.17 -17.61 -0.20 0.57 16 30 C -0.15 -1.08 10.06 -39.25 -0.39 -1.47 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 1.05 7.06 -51.93 -0.37 0.68 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.35 4.90 8.58 -39.29 -0.34 4.56 16 37 H 0.34 3.89 9.06 -39.29 -0.36 3.53 16 38 H 0.06 0.96 7.23 -51.93 -0.38 0.59 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 0.90 5.32 -51.93 -0.28 0.63 16 47 H 0.05 0.37 8.02 -51.93 -0.42 -0.05 16 48 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 49 H 0.13 0.85 7.23 -52.49 -0.38 0.48 16 50 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 51 H 0.16 0.76 8.06 -52.48 -0.42 0.33 16 52 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -33.31 410.71 -10.31 -43.63 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.57 Total: 4.51 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.30 Total: -8.78 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.69 Total: -53.44 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.31 -10.31 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353110749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.007 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds