Wall clock time and date at job start Wed Apr 1 2020 05:13:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09002 * 109.49334 * 2 1
4 4 C 1.53241 * 109.49455 * 239.94891 * 2 1 3
5 5 N 1.47080 * 108.52120 * 186.21400 * 4 2 1
6 6 C 1.34785 * 120.87951 * 231.18575 * 5 4 2
7 7 O 1.21278 * 119.99611 * 359.97438 * 6 5 4
8 8 C 1.50702 * 120.00043 * 179.97438 * 6 5 4
9 9 H 1.09004 * 109.47088 * 320.00021 * 8 6 5
10 10 N 1.46893 * 109.46932 * 199.99899 * 8 6 5
11 11 C 1.52998 * 109.46852 * 79.99777 * 8 6 5
12 12 C 1.53007 * 109.46810 * 184.99907 * 11 8 6
13 13 C 1.53003 * 109.46960 * 180.02562 * 12 11 8
14 14 C 1.50696 * 109.46688 * 180.02562 * 13 12 11
15 15 H 1.07993 * 120.00758 * 359.97438 * 14 13 12
16 16 C 1.37881 * 119.99375 * 179.97438 * 14 13 12
17 17 N 1.31508 * 120.00489 * 359.97438 * 16 14 13
18 18 Si 1.86803 * 119.99571 * 179.97438 * 16 14 13
19 19 H 1.48497 * 109.47228 * 359.97438 * 18 16 14
20 20 H 1.48506 * 109.46773 * 120.00157 * 18 16 14
21 21 H 1.48505 * 109.47268 * 239.99700 * 18 16 14
22 22 C 1.47077 * 118.24040 * 51.45323 * 5 4 2
23 23 C 1.53698 * 108.27685 * 308.48422 * 22 5 4
24 24 N 1.46899 * 109.25455 * 54.08349 * 23 22 5
25 25 C 1.39166 * 111.00052 * 172.60375 * 24 23 22
26 26 C 1.39475 * 120.86292 * 71.11305 * 25 24 23
27 27 C 1.37894 * 119.06523 * 179.73143 * 26 25 24
28 28 N 1.31994 * 120.84615 * 0.55129 * 27 26 25
29 29 C 1.31992 * 121.90625 * 359.71788 * 28 27 26
30 30 C 1.37895 * 120.84496 * 359.97438 * 29 28 27
31 31 H 1.09001 * 109.47248 * 177.89727 * 1 2 3
32 32 H 1.08994 * 109.47527 * 297.90072 * 1 2 3
33 33 H 1.09003 * 109.46980 * 57.90627 * 1 2 3
34 34 H 1.08999 * 109.63126 * 66.49925 * 4 2 1
35 35 H 1.09006 * 109.79109 * 306.01104 * 4 2 1
36 36 H 1.00901 * 111.00358 * 300.00335 * 10 8 6
37 37 H 1.00907 * 111.00222 * 63.96013 * 10 8 6
38 38 H 1.08993 * 109.47592 * 304.99861 * 11 8 6
39 39 H 1.09005 * 109.46941 * 65.00315 * 11 8 6
40 40 H 1.08995 * 109.46791 * 299.99829 * 12 11 8
41 41 H 1.08994 * 109.46799 * 60.00033 * 12 11 8
42 42 H 1.09001 * 109.46943 * 300.00021 * 13 12 11
43 43 H 1.08995 * 109.47227 * 59.99554 * 13 12 11
44 44 H 0.97001 * 120.00295 * 180.02562 * 17 16 14
45 45 H 1.08998 * 109.62838 * 68.25182 * 22 5 4
46 46 H 1.09000 * 109.63099 * 188.83174 * 22 5 4
47 47 H 1.08992 * 109.64931 * 294.08259 * 23 22 5
48 48 H 1.09001 * 109.44378 * 173.95617 * 23 22 5
49 49 H 1.07996 * 120.46456 * 359.96952 * 26 25 24
50 50 H 1.08001 * 119.57457 * 180.24722 * 27 26 25
51 51 H 1.08005 * 119.58148 * 180.02562 * 29 28 27
52 52 H 1.08003 * 120.46850 * 180.02562 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8937 1.0275 0.0000
4 6 2.0413 -0.7234 -1.2504
5 7 3.5042 -0.8429 -1.1555
6 6 4.2978 -0.4485 -2.1711
7 8 3.8074 0.0118 -3.1803
8 6 5.7944 -0.5794 -2.0525
9 1 6.1038 -0.3104 -1.0425
10 7 6.4424 0.3177 -3.0184
11 6 6.2045 -2.0243 -2.3436
12 6 7.7067 -2.1866 -2.1021
13 6 8.1170 -3.6314 -2.3939
14 6 9.5963 -3.7913 -2.1554
15 1 10.1851 -2.9469 -1.8288
16 6 10.1982 -5.0158 -2.3541
17 7 9.4812 -6.0442 -2.7513
18 14 12.0321 -5.2139 -2.0592
19 1 12.6060 -3.9163 -1.6210
20 1 12.2564 -6.2360 -1.0055
21 1 12.6919 -5.6468 -3.3172
22 6 4.0778 -1.4098 0.0744
23 6 3.4866 -0.6539 1.2750
24 7 2.0202 -0.6941 1.1983
25 6 1.4458 -0.1659 2.3506
26 6 1.5001 1.2026 2.6145
27 6 0.9138 1.6868 3.7648
28 7 0.3172 0.8722 4.6149
29 6 0.2496 -0.4290 4.4038
30 6 0.8055 -0.9918 3.2743
31 1 -0.3634 -1.0270 -0.0377
32 1 -0.3634 0.4808 0.9081
33 1 -0.3633 0.5460 -0.8706
34 1 1.7776 -0.1498 -2.1389
35 1 1.5960 -1.7165 -1.3103
36 1 6.1714 0.0887 -3.9629
37 1 6.2390 1.2834 -2.8079
38 1 5.6559 -2.6975 -1.6851
39 1 5.9754 -2.2649 -3.3818
40 1 8.2553 -1.5134 -2.7608
41 1 7.9358 -1.9460 -1.0640
42 1 7.5683 -4.3049 -1.7355
43 1 7.8878 -3.8716 -3.4320
44 1 9.9046 -6.9058 -2.8907
45 1 3.8242 -2.4676 0.1430
46 1 5.1612 -1.2902 0.0622
47 1 3.8234 0.3826 1.2574
48 1 3.8155 -1.1277 2.1998
49 1 1.9910 1.8740 1.9256
50 1 0.9474 2.7456 3.9753
51 1 -0.2482 -1.0609 5.1244
52 1 0.7462 -2.0572 3.1074
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001353110749.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:13:34
Heat of formation + Delta-G solvation = -17.388794 kcal
Electronic energy + Delta-G solvation = -30693.245552 eV
Core-core repulsion = 26691.363400 eV
Total energy + Delta-G solvation = -4001.882153 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-42.06445 -41.11670 -39.34618 -37.20765 -36.21211 -35.26844 -33.87700 -33.11246
-32.23524 -32.00488 -29.73932 -28.83260 -28.13057 -26.16326 -24.63035 -24.26217
-23.90008 -23.36118 -21.78518 -21.27739 -20.07007 -18.85777 -18.43129 -17.98115
-17.47900 -17.28797 -16.99875 -16.70663 -16.58600 -16.45358 -16.14672 -15.71022
-15.47430 -15.22018 -15.11893 -14.71223 -14.61047 -14.46314 -14.28718 -14.10701
-13.74528 -13.56202 -13.18297 -13.14336 -13.04236 -12.80943 -12.75240 -12.55696
-12.51725 -12.39403 -12.34073 -12.18869 -12.14290 -11.47558 -11.36626 -11.20484
-10.95056 -10.54716 -10.51281 -10.49492 -10.13471 -9.99212 -9.71360 -9.56306
-8.15914 -6.25921 0.13671 0.21114 1.40404 1.41912 1.42921 1.55892
1.81669 2.44208 2.48379 2.81402 3.17397 3.31552 3.53535 3.57208
3.66416 3.69277 3.86931 3.93516 3.97859 4.01964 4.05804 4.11800
4.14434 4.25025 4.27437 4.46129 4.47944 4.51532 4.62750 4.64907
4.69694 4.74027 4.80450 4.83297 4.88623 4.91761 4.92271 5.13610
5.14049 5.25407 5.28031 5.32055 5.35947 5.61973 5.62469 5.71052
5.85860 5.95319 5.99487 6.12560 6.26494 6.31866 6.44487 6.92315
6.97087 7.02093 7.43119 8.95987
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.013833 B = 0.002169 C = 0.001994
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2023.629806 B =12908.997739 C =14042.218982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.082 3.918
3 H 0.047 0.953
4 C 0.119 3.881
5 N -0.608 5.608
6 C 0.486 3.514
7 O -0.582 6.582
8 C 0.087 3.913
9 H 0.122 0.878
10 N -0.817 5.817
11 C -0.094 4.094
12 C -0.082 4.082
13 C 0.022 3.978
14 C -0.536 4.536
15 H 0.060 0.940
16 C -0.003 4.003
17 N -0.935 5.935
18 Si 0.962 3.038
19 H -0.261 1.261
20 H -0.277 1.277
21 H -0.282 1.282
22 C 0.105 3.895
23 C 0.052 3.948
24 N -0.501 5.501
25 C 0.137 3.863
26 C -0.206 4.206
27 C 0.101 3.899
28 N -0.516 5.516
29 C 0.101 3.899
30 C -0.152 4.152
31 H 0.069 0.931
32 H 0.056 0.944
33 H 0.074 0.926
34 H 0.084 0.916
35 H 0.079 0.921
36 H 0.346 0.654
37 H 0.348 0.652
38 H 0.072 0.928
39 H 0.044 0.956
40 H 0.055 0.945
41 H 0.058 0.942
42 H -0.006 1.006
43 H -0.018 1.018
44 H 0.262 0.738
45 H 0.087 0.913
46 H 0.107 0.893
47 H 0.048 0.952
48 H 0.105 0.895
49 H 0.135 0.865
50 H 0.170 0.830
51 H 0.179 0.821
52 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.003 15.250 13.299 29.164
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.025 4.025
3 H 0.065 0.935
4 C -0.004 4.004
5 N -0.340 5.340
6 C 0.274 3.726
7 O -0.462 6.462
8 C -0.028 4.028
9 H 0.140 0.860
10 N -0.346 5.346
11 C -0.132 4.132
12 C -0.120 4.120
13 C -0.015 4.015
14 C -0.574 4.574
15 H 0.078 0.922
16 C -0.201 4.201
17 N -0.576 5.576
18 Si 0.787 3.213
19 H -0.185 1.185
20 H -0.203 1.203
21 H -0.208 1.208
22 C -0.018 4.018
23 C -0.075 4.075
24 N -0.223 5.223
25 C 0.035 3.965
26 C -0.228 4.228
27 C -0.056 4.056
28 N -0.226 5.226
29 C -0.056 4.056
30 C -0.173 4.173
31 H 0.088 0.912
32 H 0.075 0.925
33 H 0.093 0.907
34 H 0.102 0.898
35 H 0.097 0.903
36 H 0.159 0.841
37 H 0.162 0.838
38 H 0.091 0.909
39 H 0.063 0.937
40 H 0.074 0.926
41 H 0.077 0.923
42 H 0.012 0.988
43 H 0.001 0.999
44 H 0.071 0.929
45 H 0.105 0.895
46 H 0.125 0.875
47 H 0.067 0.933
48 H 0.123 0.877
49 H 0.153 0.847
50 H 0.187 0.813
51 H 0.196 0.804
52 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -21.034 14.879 13.686 29.174
hybrid contribution 0.438 0.187 -1.236 1.324
sum -20.597 15.065 12.450 28.393
Atomic orbital electron populations
1.21792 0.92103 1.03359 1.02550 1.21970 0.96761 0.95259 0.88539
0.93490 1.21763 0.79389 1.01647 0.97582 1.48352 1.06937 1.61637
1.17098 1.22496 0.91700 0.76117 0.82317 1.90648 1.77021 1.47594
1.30923 1.21647 0.85885 0.95569 0.99729 0.86032 1.59061 1.61973
1.07108 1.06455 1.21467 0.97638 0.92886 1.01209 1.21275 0.93464
0.96481 1.00791 1.19048 0.94915 0.93196 0.94342 1.21754 0.95417
0.95665 1.44576 0.92165 1.25978 1.03145 0.95844 0.95099 1.70104
1.37704 1.01571 1.48211 0.85441 0.79590 0.78495 0.77777 1.18498
1.20309 1.20754 1.22238 0.99458 0.98637 0.81442 1.22643 0.85044
1.00180 0.99631 1.59485 1.07211 1.55368 1.00228 1.19129 0.94746
0.91462 0.91172 1.22734 1.03222 0.96742 1.00127 1.22916 0.92439
1.00638 0.89564 1.67762 1.17092 1.05858 1.31853 1.23129 0.95511
0.91043 0.95918 1.22257 0.98344 1.02219 0.94434 0.91163 0.92468
0.90704 0.89761 0.90254 0.84072 0.83814 0.90901 0.93698 0.92604
0.92343 0.98804 0.99918 0.92935 0.89458 0.87471 0.93333 0.87665
0.84734 0.81294 0.80409 0.83010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.75 8.96 71.98 0.64 -1.10 16
2 C 0.08 1.21 2.18 44.99 0.10 1.31 16
3 H 0.05 0.74 7.18 -2.39 -0.02 0.73 16
4 C 0.12 2.21 5.88 86.35 0.51 2.72 16
5 N -0.61 -12.41 3.00 -817.03 -2.45 -14.87 16
6 C 0.49 12.53 6.95 87.66 0.61 13.14 16
7 O -0.58 -18.68 15.70 -3.02 -0.05 -18.73 16
8 C 0.09 2.19 2.30 44.17 0.10 2.29 16
9 H 0.12 2.53 6.53 -2.39 -0.02 2.52 16
10 N -0.82 -21.04 8.44 -171.81 -1.45 -22.49 16
11 C -0.09 -2.96 4.63 30.60 0.14 -2.82 16
12 C -0.08 -3.23 5.04 30.60 0.15 -3.07 16
13 C 0.02 1.15 4.97 29.85 0.15 1.30 16
14 C -0.54 -30.39 9.11 25.60 0.23 -30.15 16
15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16
16 C 0.00 -0.20 5.46 84.66 0.46 0.26 16
17 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16
18 Si 0.96 44.30 29.54 68.60 2.03 46.33 16
19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16
20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16
21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
22 C 0.10 1.69 5.75 86.50 0.50 2.19 16
23 C 0.05 0.69 5.41 86.54 0.47 1.16 16
24 N -0.50 -7.01 4.47 -669.03 -2.99 -10.00 16
25 C 0.14 1.88 3.19 38.57 0.12 2.00 16
26 C -0.21 -2.70 8.40 22.49 0.19 -2.51 16
27 C 0.10 1.39 11.17 84.59 0.94 2.33 16
28 N -0.52 -8.49 10.36 -196.16 -2.03 -10.52 16
29 C 0.10 1.30 11.17 84.59 0.94 2.25 16
30 C -0.15 -1.90 10.06 22.49 0.23 -1.68 16
31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
32 H 0.06 0.76 6.54 -2.39 -0.02 0.74 16
33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
34 H 0.08 1.81 7.06 -2.39 -0.02 1.79 16
35 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16
36 H 0.35 9.61 8.58 -89.69 -0.77 8.84 16
37 H 0.35 7.60 9.06 -89.69 -0.81 6.78 16
38 H 0.07 2.16 7.23 -2.39 -0.02 2.14 16
39 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16
40 H 0.06 2.27 7.75 -2.39 -0.02 2.26 16
41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16
43 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16
44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16
45 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
46 H 0.11 1.64 5.32 -2.39 -0.01 1.63 16
47 H 0.05 0.65 8.02 -2.39 -0.02 0.63 16
48 H 0.11 1.23 8.09 -2.39 -0.02 1.21 16
49 H 0.13 1.56 7.23 -2.91 -0.02 1.54 16
50 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16
51 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16
52 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16
Total: -1.00 -71.62 410.71 -0.82 -72.45
By element:
Atomic # 1 Polarization: 25.71 SS G_CDS: -0.65 Total: 25.06 kcal
Atomic # 6 Polarization: -16.90 SS G_CDS: 6.50 Total: -10.40 kcal
Atomic # 7 Polarization: -106.06 SS G_CDS: -8.64 Total: -114.70 kcal
Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal
Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal
Total: -71.62 -0.82 -72.45 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001353110749.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.058 kcal
(2) G-P(sol) polarization free energy of solvation -71.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.567 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds