Wall clock time and date at job start Wed Apr 1 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.49666 * 2 1 4 4 C 1.53241 * 109.49047 * 239.95230 * 2 1 3 5 5 N 1.47090 * 108.51946 * 186.21193 * 4 2 1 6 6 C 1.34782 * 120.87801 * 231.18281 * 5 4 2 7 7 O 1.21280 * 119.99800 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99580 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.47583 * 39.99922 * 8 6 5 10 10 N 1.46904 * 109.46963 * 160.00372 * 8 6 5 11 11 C 1.53000 * 109.46806 * 279.99864 * 8 6 5 12 12 C 1.53008 * 109.46934 * 175.00335 * 11 8 6 13 13 C 1.53000 * 109.46934 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47157 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99619 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00451 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00415 * 180.02562 * 16 14 13 18 18 Si 1.86810 * 119.99750 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46898 * 89.99995 * 18 16 14 20 20 H 1.48499 * 109.47151 * 209.99716 * 18 16 14 21 21 H 1.48499 * 109.47128 * 329.99973 * 18 16 14 22 22 C 1.47073 * 118.23634 * 51.45908 * 5 4 2 23 23 C 1.53699 * 108.27795 * 308.47801 * 22 5 4 24 24 N 1.46900 * 109.25145 * 54.08860 * 23 22 5 25 25 C 1.39173 * 111.00091 * 172.60937 * 24 23 22 26 26 C 1.39478 * 120.86430 * 71.10570 * 25 24 23 27 27 C 1.37893 * 119.06395 * 179.73466 * 26 25 24 28 28 N 1.32006 * 120.84464 * 0.55333 * 27 26 25 29 29 C 1.31993 * 121.90394 * 359.71868 * 28 27 26 30 30 C 1.37898 * 120.84853 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47614 * 177.89757 * 1 2 3 32 32 H 1.09005 * 109.47071 * 297.89736 * 1 2 3 33 33 H 1.09003 * 109.47513 * 57.89510 * 1 2 3 34 34 H 1.08997 * 109.63200 * 66.50233 * 4 2 1 35 35 H 1.08999 * 109.79323 * 306.01238 * 4 2 1 36 36 H 1.00896 * 110.99936 * 59.99468 * 10 8 6 37 37 H 1.00900 * 110.99974 * 183.94839 * 10 8 6 38 38 H 1.09001 * 109.47803 * 295.00241 * 11 8 6 39 39 H 1.09000 * 109.47545 * 55.00595 * 11 8 6 40 40 H 1.09000 * 109.46813 * 299.99965 * 12 11 8 41 41 H 1.08992 * 109.46939 * 60.00113 * 12 11 8 42 42 H 1.09000 * 109.47558 * 300.00395 * 13 12 11 43 43 H 1.09005 * 109.47180 * 59.99989 * 13 12 11 44 44 H 0.97001 * 120.00088 * 180.02562 * 17 16 14 45 45 H 1.08998 * 109.63384 * 68.25256 * 22 5 4 46 46 H 1.09008 * 109.62513 * 188.83167 * 22 5 4 47 47 H 1.08996 * 109.64912 * 294.08762 * 23 22 5 48 48 H 1.09002 * 109.42214 * 173.94801 * 23 22 5 49 49 H 1.07992 * 120.46843 * 359.97438 * 26 25 24 50 50 H 1.08001 * 119.58020 * 180.25031 * 27 26 25 51 51 H 1.08002 * 119.57217 * 180.02562 * 29 28 27 52 52 H 1.07996 * 120.46731 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2505 5 7 3.5042 -0.8429 -1.1557 6 6 4.2977 -0.4484 -2.1713 7 8 3.8072 0.0127 -3.1801 8 6 5.7942 -0.5804 -2.0531 9 1 6.0384 -1.5239 -1.5651 10 7 6.3955 -0.5521 -3.3932 11 6 6.3445 0.5807 -1.2226 12 6 7.8447 0.3806 -0.9974 13 6 8.3949 1.5414 -0.1663 14 6 9.8723 1.3440 0.0560 15 1 10.3691 0.4776 -0.3547 16 6 10.5899 2.2701 0.7829 17 7 11.8793 2.0981 0.9765 18 14 9.7306 3.7693 1.4928 19 1 9.2316 3.4547 2.8556 20 1 10.6892 4.9010 1.5657 21 1 8.5879 4.1437 0.6214 22 6 4.0778 -1.4099 0.0742 23 6 3.4867 -0.6540 1.2748 24 7 2.0202 -0.6942 1.1982 25 6 1.4459 -0.1660 2.3506 26 6 1.5003 1.2025 2.6145 27 6 0.9140 1.6867 3.7649 28 7 0.3174 0.8719 4.6150 29 6 0.2497 -0.4292 4.4037 30 6 0.8065 -0.9921 3.2747 31 1 -0.3634 -1.0269 -0.0377 32 1 -0.3633 0.4809 0.9083 33 1 -0.3634 0.5462 -0.8705 34 1 1.7775 -0.1496 -2.1389 35 1 1.5959 -1.7164 -1.3104 36 1 6.1834 0.3133 -3.8665 37 1 7.3920 -0.7034 -3.3456 38 1 6.1788 1.5181 -1.7536 39 1 5.8339 0.6132 -0.2602 40 1 8.0104 -0.5567 -0.4663 41 1 8.3553 0.3482 -1.9597 42 1 8.2290 2.4790 -0.6970 43 1 7.8841 1.5734 0.7961 44 1 12.3840 2.7495 1.4882 45 1 3.8242 -2.4678 0.1426 46 1 5.1612 -1.2903 0.0619 47 1 3.8235 0.3824 1.2573 48 1 3.8157 -1.1284 2.1994 49 1 1.9912 1.8740 1.9257 50 1 0.9477 2.7454 3.9755 51 1 -0.2481 -1.0611 5.1244 52 1 0.7472 -2.0574 3.1078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353110799.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:49 Heat of formation + Delta-G solvation = 9.066694 kcal Electronic energy + Delta-G solvation = -31188.939275 eV Core-core repulsion = 27188.204319 eV Total energy + Delta-G solvation = -4000.734957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32389 -40.20366 -38.51783 -36.25340 -35.31778 -33.50404 -33.11621 -31.62761 -31.53659 -31.30690 -28.59369 -28.10070 -27.18700 -24.99016 -23.94208 -23.34995 -23.03537 -22.10235 -20.66291 -20.28424 -19.04839 -18.07671 -17.28501 -16.81148 -16.68985 -16.43425 -16.03989 -15.96865 -15.37980 -15.10306 -14.99692 -14.59544 -14.44327 -14.35530 -14.14068 -13.99364 -13.84254 -13.51385 -13.28072 -12.93768 -12.68781 -12.55897 -12.44145 -12.24387 -12.09803 -12.08262 -11.74451 -11.69038 -11.57494 -11.47141 -11.08729 -10.85142 -10.12104 -10.04644 -9.90611 -9.87459 -9.83310 -9.56672 -9.53973 -9.29480 -9.20687 -8.78823 -8.63065 -8.59222 -6.12508 -4.11275 0.75569 0.81796 2.54414 2.65436 3.16825 3.22741 3.31381 3.33600 3.42844 4.11325 4.17961 4.36968 4.37332 4.43229 4.52464 4.62506 4.68500 4.69577 4.77386 4.80034 4.88588 4.89930 5.03507 5.08232 5.13556 5.21422 5.22035 5.27246 5.35168 5.37843 5.42446 5.45458 5.48898 5.57140 5.59803 5.72570 5.73541 5.88045 6.02960 6.16215 6.21678 6.33215 6.38461 6.45757 6.72566 6.76825 7.01894 7.14652 7.25043 7.28457 7.50334 7.62698 7.69849 8.07779 8.44359 8.91937 9.49854 11.00867 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.003142 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.649817 B = 8910.330895 C =11318.868504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.053 0.947 4 C 0.124 3.876 5 N -0.618 5.618 6 C 0.528 3.472 7 O -0.533 6.533 8 C 0.075 3.925 9 H 0.102 0.898 10 N -0.829 5.829 11 C -0.151 4.151 12 C -0.101 4.101 13 C -0.012 4.012 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.109 3.891 23 C 0.045 3.955 24 N -0.499 5.499 25 C 0.145 3.855 26 C -0.205 4.205 27 C 0.110 3.890 28 N -0.491 5.491 29 C 0.104 3.896 30 C -0.152 4.152 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.349 0.651 37 H 0.353 0.647 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.014 0.986 43 H 0.010 0.990 44 H 0.264 0.736 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.051 0.949 48 H 0.094 0.906 49 H 0.131 0.869 50 H 0.154 0.846 51 H 0.158 0.842 52 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.305 -7.381 2.094 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.037 4.037 3 H 0.071 0.929 4 C 0.001 3.999 5 N -0.353 5.353 6 C 0.316 3.684 7 O -0.408 6.408 8 C -0.040 4.040 9 H 0.119 0.881 10 N -0.362 5.362 11 C -0.191 4.191 12 C -0.139 4.139 13 C -0.049 4.049 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.134 4.134 17 N -0.541 5.541 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.014 4.014 23 C -0.082 4.082 24 N -0.222 5.222 25 C 0.043 3.957 26 C -0.227 4.227 27 C -0.047 4.047 28 N -0.200 5.200 29 C -0.053 4.053 30 C -0.173 4.173 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.119 0.881 47 H 0.069 0.931 48 H 0.112 0.888 49 H 0.148 0.852 50 H 0.172 0.828 51 H 0.175 0.825 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.345 -7.833 2.129 27.567 hybrid contribution 0.936 2.159 0.280 2.369 sum -25.409 -5.675 2.408 26.146 Atomic orbital electron populations 1.21848 0.93021 1.03127 1.02443 1.22111 0.96152 0.96151 0.89243 0.92870 1.21677 0.79637 1.01331 0.97217 1.48150 1.06528 1.63639 1.17021 1.20755 0.89213 0.76328 0.82056 1.90654 1.76190 1.44533 1.29397 1.21451 0.90120 1.00594 0.91817 0.88057 1.58678 1.17825 1.43518 1.16157 1.22497 0.99171 0.97596 0.99853 1.21485 0.91019 1.00716 1.00638 1.19546 0.96997 0.93803 0.94575 1.21123 0.91620 1.09474 1.33870 0.90981 1.25032 0.94702 0.97908 0.95774 1.69907 1.06898 1.36413 1.40835 0.86798 0.79766 0.83029 0.79788 1.20301 1.21286 1.19171 1.22047 0.99158 0.98016 0.82210 1.22677 0.85093 1.00657 0.99750 1.59531 1.07115 1.55279 1.00235 1.19032 0.94413 0.91121 0.91183 1.22721 1.02994 0.96843 1.00125 1.22634 0.92595 0.99897 0.89590 1.67740 1.16283 1.04988 1.30978 1.22752 0.95816 0.91261 0.95459 1.22085 0.98939 1.01562 0.94723 0.91292 0.92230 0.91350 0.88416 0.90595 0.83723 0.83152 0.91708 0.91728 0.92387 0.92602 0.96800 0.97212 0.92661 0.90043 0.88053 0.93110 0.88756 0.85153 0.82825 0.82490 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.96 37.15 0.33 -0.71 16 2 C 0.07 0.60 2.18 -67.59 -0.15 0.45 16 3 H 0.05 0.52 7.18 -51.93 -0.37 0.14 16 4 C 0.12 1.19 5.88 -3.60 -0.02 1.17 16 5 N -0.62 -6.63 3.00 -172.18 -0.52 -7.14 16 6 C 0.53 7.15 6.96 -10.98 -0.08 7.07 16 7 O -0.53 -8.91 15.70 5.56 0.09 -8.82 16 8 C 0.08 0.96 2.35 -68.86 -0.16 0.80 16 9 H 0.10 1.16 6.85 -51.93 -0.36 0.80 16 10 N -0.83 -11.00 8.94 -5.65 -0.05 -11.06 16 11 C -0.15 -2.15 4.51 -26.73 -0.12 -2.27 16 12 C -0.10 -1.75 4.92 -26.73 -0.13 -1.88 16 13 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 18 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 22 C 0.11 0.95 5.99 -3.37 -0.02 0.93 16 23 C 0.04 0.39 5.41 -3.46 -0.02 0.37 16 24 N -0.50 -4.15 4.47 -162.81 -0.73 -4.88 16 25 C 0.14 1.23 3.19 -83.61 -0.27 0.96 16 26 C -0.20 -1.79 8.40 -39.25 -0.33 -2.12 16 27 C 0.11 0.98 11.17 -17.60 -0.20 0.78 16 28 N -0.49 -4.86 10.36 -13.35 -0.14 -4.99 16 29 C 0.10 0.83 11.17 -17.61 -0.20 0.63 16 30 C -0.15 -1.16 10.06 -39.25 -0.39 -1.55 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 1.05 7.06 -51.93 -0.37 0.69 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.35 4.79 8.58 -39.29 -0.34 4.45 16 37 H 0.35 4.39 7.55 -39.29 -0.30 4.09 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.86 6.95 -51.93 -0.36 0.50 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.96 6.87 -51.93 -0.36 0.61 16 42 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 43 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.88 4.86 -51.92 -0.25 0.63 16 47 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 48 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 49 H 0.13 1.10 7.23 -52.49 -0.38 0.72 16 50 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 52 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -33.17 404.86 -9.85 -43.01 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.41 Total: 6.34 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.29 Total: -8.64 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.66 Total: -54.63 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.17 -9.85 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353110799.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.081 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds