Wall clock time and date at job start Wed Apr 1 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.49666 * 2 1 4 4 C 1.53241 * 109.49047 * 239.95230 * 2 1 3 5 5 N 1.47090 * 108.51946 * 186.21193 * 4 2 1 6 6 C 1.34782 * 120.87801 * 231.18281 * 5 4 2 7 7 O 1.21280 * 119.99800 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99580 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.47583 * 39.99922 * 8 6 5 10 10 N 1.46904 * 109.46963 * 160.00372 * 8 6 5 11 11 C 1.53000 * 109.46806 * 279.99864 * 8 6 5 12 12 C 1.53008 * 109.46934 * 175.00335 * 11 8 6 13 13 C 1.53000 * 109.46934 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47157 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99619 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00451 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00415 * 180.02562 * 16 14 13 18 18 Si 1.86810 * 119.99750 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46898 * 89.99995 * 18 16 14 20 20 H 1.48499 * 109.47151 * 209.99716 * 18 16 14 21 21 H 1.48499 * 109.47128 * 329.99973 * 18 16 14 22 22 C 1.47073 * 118.23634 * 51.45908 * 5 4 2 23 23 C 1.53699 * 108.27795 * 308.47801 * 22 5 4 24 24 N 1.46900 * 109.25145 * 54.08860 * 23 22 5 25 25 C 1.39173 * 111.00091 * 172.60937 * 24 23 22 26 26 C 1.39478 * 120.86430 * 71.10570 * 25 24 23 27 27 C 1.37893 * 119.06395 * 179.73466 * 26 25 24 28 28 N 1.32006 * 120.84464 * 0.55333 * 27 26 25 29 29 C 1.31993 * 121.90394 * 359.71868 * 28 27 26 30 30 C 1.37898 * 120.84853 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47614 * 177.89757 * 1 2 3 32 32 H 1.09005 * 109.47071 * 297.89736 * 1 2 3 33 33 H 1.09003 * 109.47513 * 57.89510 * 1 2 3 34 34 H 1.08997 * 109.63200 * 66.50233 * 4 2 1 35 35 H 1.08999 * 109.79323 * 306.01238 * 4 2 1 36 36 H 1.00896 * 110.99936 * 59.99468 * 10 8 6 37 37 H 1.00900 * 110.99974 * 183.94839 * 10 8 6 38 38 H 1.09001 * 109.47803 * 295.00241 * 11 8 6 39 39 H 1.09000 * 109.47545 * 55.00595 * 11 8 6 40 40 H 1.09000 * 109.46813 * 299.99965 * 12 11 8 41 41 H 1.08992 * 109.46939 * 60.00113 * 12 11 8 42 42 H 1.09000 * 109.47558 * 300.00395 * 13 12 11 43 43 H 1.09005 * 109.47180 * 59.99989 * 13 12 11 44 44 H 0.97001 * 120.00088 * 180.02562 * 17 16 14 45 45 H 1.08998 * 109.63384 * 68.25256 * 22 5 4 46 46 H 1.09008 * 109.62513 * 188.83167 * 22 5 4 47 47 H 1.08996 * 109.64912 * 294.08762 * 23 22 5 48 48 H 1.09002 * 109.42214 * 173.94801 * 23 22 5 49 49 H 1.07992 * 120.46843 * 359.97438 * 26 25 24 50 50 H 1.08001 * 119.58020 * 180.25031 * 27 26 25 51 51 H 1.08002 * 119.57217 * 180.02562 * 29 28 27 52 52 H 1.07996 * 120.46731 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2505 5 7 3.5042 -0.8429 -1.1557 6 6 4.2977 -0.4484 -2.1713 7 8 3.8072 0.0127 -3.1801 8 6 5.7942 -0.5804 -2.0531 9 1 6.0384 -1.5239 -1.5651 10 7 6.3955 -0.5521 -3.3932 11 6 6.3445 0.5807 -1.2226 12 6 7.8447 0.3806 -0.9974 13 6 8.3949 1.5414 -0.1663 14 6 9.8723 1.3440 0.0560 15 1 10.3691 0.4776 -0.3547 16 6 10.5899 2.2701 0.7829 17 7 11.8793 2.0981 0.9765 18 14 9.7306 3.7693 1.4928 19 1 9.2316 3.4547 2.8556 20 1 10.6892 4.9010 1.5657 21 1 8.5879 4.1437 0.6214 22 6 4.0778 -1.4099 0.0742 23 6 3.4867 -0.6540 1.2748 24 7 2.0202 -0.6942 1.1982 25 6 1.4459 -0.1660 2.3506 26 6 1.5003 1.2025 2.6145 27 6 0.9140 1.6867 3.7649 28 7 0.3174 0.8719 4.6150 29 6 0.2497 -0.4292 4.4037 30 6 0.8065 -0.9921 3.2747 31 1 -0.3634 -1.0269 -0.0377 32 1 -0.3633 0.4809 0.9083 33 1 -0.3634 0.5462 -0.8705 34 1 1.7775 -0.1496 -2.1389 35 1 1.5959 -1.7164 -1.3104 36 1 6.1834 0.3133 -3.8665 37 1 7.3920 -0.7034 -3.3456 38 1 6.1788 1.5181 -1.7536 39 1 5.8339 0.6132 -0.2602 40 1 8.0104 -0.5567 -0.4663 41 1 8.3553 0.3482 -1.9597 42 1 8.2290 2.4790 -0.6970 43 1 7.8841 1.5734 0.7961 44 1 12.3840 2.7495 1.4882 45 1 3.8242 -2.4678 0.1426 46 1 5.1612 -1.2903 0.0619 47 1 3.8235 0.3824 1.2573 48 1 3.8157 -1.1284 2.1994 49 1 1.9912 1.8740 1.9257 50 1 0.9477 2.7454 3.9755 51 1 -0.2481 -1.0611 5.1244 52 1 0.7472 -2.0574 3.1078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353110799.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:48 Heat of formation + Delta-G solvation = -14.292457 kcal Electronic energy + Delta-G solvation = -31189.952204 eV Core-core repulsion = 27188.204319 eV Total energy + Delta-G solvation = -4001.747885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.04372 -41.06624 -39.30405 -37.50933 -36.16144 -35.26481 -33.87757 -33.26031 -32.23622 -31.99996 -29.89503 -28.80389 -28.33062 -26.22426 -24.59546 -24.15374 -23.87284 -23.33643 -21.82618 -21.40208 -19.93482 -18.92888 -18.89782 -18.08509 -17.43991 -17.23287 -16.73477 -16.60868 -16.48678 -16.24923 -16.10724 -15.96507 -15.39514 -15.13791 -15.12619 -14.91075 -14.72311 -14.59510 -14.39407 -14.22493 -13.84448 -13.66101 -13.56671 -13.13597 -13.06839 -12.94704 -12.75164 -12.71096 -12.46785 -12.43056 -12.37136 -12.15617 -11.83174 -11.72308 -11.48353 -11.35033 -10.79267 -10.78014 -10.54543 -10.48068 -10.14201 -9.97626 -9.70259 -9.55008 -8.30921 -6.34496 0.13360 0.20277 1.32049 1.34866 1.45357 1.50775 1.79953 2.33137 2.49375 2.80724 3.04836 3.33327 3.55927 3.59968 3.67096 3.71303 3.90645 3.92129 3.98636 4.00081 4.03177 4.08667 4.14698 4.23984 4.26882 4.32648 4.43627 4.49186 4.53886 4.64538 4.67898 4.71150 4.74447 4.81607 4.83506 4.87926 4.91084 4.93740 5.03742 5.08583 5.15333 5.26035 5.36026 5.49226 5.56543 5.61264 5.65457 5.70788 6.00672 6.12493 6.27114 6.31229 6.46116 6.74510 7.01368 7.07756 7.30510 8.85748 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.003142 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.649817 B = 8910.330895 C =11318.868504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 H 0.039 0.961 4 C 0.125 3.875 5 N -0.612 5.612 6 C 0.525 3.475 7 O -0.570 6.570 8 C 0.082 3.918 9 H 0.120 0.880 10 N -0.834 5.834 11 C -0.136 4.136 12 C -0.092 4.092 13 C -0.011 4.011 14 C -0.530 4.530 15 H 0.036 0.964 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.946 3.054 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.251 1.251 22 C 0.108 3.892 23 C 0.046 3.954 24 N -0.493 5.493 25 C 0.137 3.863 26 C -0.211 4.211 27 C 0.099 3.901 28 N -0.516 5.516 29 C 0.100 3.900 30 C -0.148 4.148 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.346 0.654 37 H 0.357 0.643 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.011 0.989 43 H 0.019 0.981 44 H 0.265 0.735 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.037 0.963 48 H 0.105 0.895 49 H 0.128 0.872 50 H 0.165 0.835 51 H 0.182 0.818 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.502 -8.007 3.069 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 H 0.057 0.943 4 C 0.002 3.998 5 N -0.345 5.345 6 C 0.314 3.686 7 O -0.449 6.449 8 C -0.033 4.033 9 H 0.138 0.862 10 N -0.366 5.366 11 C -0.176 4.176 12 C -0.129 4.129 13 C -0.049 4.049 14 C -0.568 4.568 15 H 0.055 0.945 16 C -0.192 4.192 17 N -0.592 5.592 18 Si 0.770 3.230 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.175 1.175 22 C -0.015 4.015 23 C -0.081 4.081 24 N -0.215 5.215 25 C 0.035 3.965 26 C -0.233 4.233 27 C -0.057 4.057 28 N -0.225 5.225 29 C -0.056 4.056 30 C -0.169 4.169 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.056 0.944 48 H 0.124 0.876 49 H 0.146 0.854 50 H 0.182 0.818 51 H 0.199 0.801 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -28.565 -8.483 3.126 29.962 hybrid contribution 1.642 2.260 -0.020 2.794 sum -26.923 -6.223 3.106 27.807 Atomic orbital electron populations 1.21785 0.91894 1.03603 1.02415 1.22022 0.96942 0.95165 0.88924 0.94315 1.21736 0.78965 1.01930 0.97164 1.48207 1.06950 1.62472 1.16910 1.20831 0.89543 0.76115 0.82128 1.90640 1.76759 1.46450 1.31037 1.21419 0.89810 1.00703 0.91377 0.86201 1.58689 1.18140 1.43345 1.16446 1.22293 0.96823 0.97801 1.00680 1.21321 0.93006 0.98947 0.99676 1.19516 0.93868 0.95633 0.95841 1.21522 0.94306 1.08072 1.32872 0.94539 1.25985 0.95323 1.01452 0.96476 1.70062 1.08780 1.37959 1.42374 0.85719 0.78934 0.78753 0.79587 1.18986 1.21256 1.17465 1.22216 0.99253 0.98903 0.81112 1.22675 0.85291 0.99976 1.00135 1.59571 1.06918 1.54893 1.00085 1.19148 0.94745 0.91193 0.91414 1.22739 1.03260 0.97147 1.00153 1.22856 0.92640 1.00571 0.89650 1.67764 1.17087 1.06033 1.31661 1.23192 0.95483 0.90938 0.96033 1.22266 0.98120 1.02331 0.94160 0.90560 0.92810 0.90767 0.89831 0.89273 0.84090 0.82763 0.92733 0.90487 0.91741 0.92869 0.97105 0.96268 0.92568 0.88186 0.87818 0.94434 0.87647 0.85364 0.81755 0.80107 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.96 71.98 0.64 -1.11 16 2 C 0.08 1.19 2.18 44.99 0.10 1.29 16 3 H 0.04 0.72 7.18 -2.39 -0.02 0.70 16 4 C 0.12 2.18 5.88 86.35 0.51 2.69 16 5 N -0.61 -11.98 3.00 -817.03 -2.45 -14.43 16 6 C 0.53 13.51 6.96 87.66 0.61 14.12 16 7 O -0.57 -18.79 15.70 -3.03 -0.05 -18.84 16 8 C 0.08 1.95 2.35 44.17 0.10 2.05 16 9 H 0.12 2.42 6.85 -2.39 -0.02 2.40 16 10 N -0.83 -21.26 8.94 -171.80 -1.54 -22.79 16 11 C -0.14 -3.61 4.51 30.60 0.14 -3.47 16 12 C -0.09 -3.06 4.92 30.60 0.15 -2.91 16 13 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 14 C -0.53 -29.37 9.66 25.60 0.25 -29.12 16 15 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 16 C 0.00 0.25 5.47 84.65 0.46 0.72 16 17 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 18 Si 0.95 43.45 27.47 68.60 1.88 45.33 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 22 C 0.11 1.58 5.99 86.51 0.52 2.10 16 23 C 0.05 0.68 5.41 86.54 0.47 1.15 16 24 N -0.49 -7.11 4.47 -669.02 -2.99 -10.10 16 25 C 0.14 2.07 3.19 38.57 0.12 2.19 16 26 C -0.21 -3.45 8.40 22.49 0.19 -3.26 16 27 C 0.10 1.68 11.17 84.58 0.94 2.62 16 28 N -0.52 -9.51 10.36 -196.15 -2.03 -11.54 16 29 C 0.10 1.38 11.17 84.59 0.94 2.33 16 30 C -0.15 -1.89 10.06 22.49 0.23 -1.67 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.76 6.54 -2.38 -0.02 0.74 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.75 7.06 -2.39 -0.02 1.73 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.35 9.30 8.58 -89.70 -0.77 8.53 16 37 H 0.36 8.51 7.55 -89.69 -0.68 7.84 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.86 6.95 -2.39 -0.02 1.85 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.80 6.87 -2.39 -0.02 1.78 16 42 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 43 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.10 1.50 4.86 -2.38 -0.01 1.49 16 47 H 0.04 0.67 8.02 -2.39 -0.02 0.65 16 48 H 0.11 1.37 8.09 -2.39 -0.02 1.35 16 49 H 0.13 2.09 7.23 -2.91 -0.02 2.07 16 50 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 51 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 52 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -72.04 404.86 -0.95 -72.98 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.57 Total: 28.53 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 6.50 Total: -10.66 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -8.71 Total: -117.35 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.84 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Total: -72.04 -0.95 -72.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353110799.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.692 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds