Wall clock time and date at job start Wed Apr 1 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.28599 * 2 1 4 4 C 1.54004 * 110.32632 * 122.12924 * 2 1 3 5 5 N 1.47486 * 107.08176 * 120.20155 * 4 2 1 6 6 C 1.34781 * 127.02837 * 154.52110 * 5 4 2 7 7 O 1.21604 * 119.99384 * 185.48064 * 6 5 4 8 8 C 1.47418 * 120.00441 * 5.47623 * 6 5 4 9 9 C 1.38047 * 126.41727 * 24.48637 * 8 6 5 10 10 N 1.34256 * 107.42189 * 180.02562 * 9 8 6 11 11 C 1.46500 * 125.75631 * 179.97438 * 10 9 8 12 12 N 1.39935 * 108.49005 * 359.74936 * 10 9 8 13 13 C 1.30448 * 108.89504 * 0.42554 * 12 10 9 14 14 C 1.50708 * 125.98912 * 179.84926 * 13 12 10 15 15 C 1.53786 * 113.61199 * 299.69439 * 14 13 12 16 16 C 1.53784 * 87.07877 * 140.06263 * 15 14 13 17 17 C 1.53782 * 87.17551 * 334.52479 * 16 15 14 18 18 C 1.48108 * 105.93205 * 334.77946 * 5 4 2 19 19 C 1.54588 * 103.42628 * 39.02384 * 18 5 4 20 20 H 1.08996 * 110.57741 * 81.17010 * 19 18 5 21 21 C 1.53006 * 110.99148 * 204.37395 * 19 18 5 22 22 N 1.46495 * 109.46956 * 288.65023 * 21 19 18 23 23 C 1.36937 * 120.00429 * 180.02562 * 22 21 19 24 24 H 1.08004 * 119.99292 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00815 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99486 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00312 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47250 * 60.00044 * 27 25 23 29 29 H 1.48501 * 109.47005 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47447 * 299.99970 * 27 25 23 31 31 H 1.09001 * 109.47343 * 299.32003 * 1 2 3 32 32 H 1.09003 * 109.47093 * 59.32586 * 1 2 3 33 33 H 1.08998 * 109.46971 * 179.32048 * 1 2 3 34 34 H 1.09003 * 109.91493 * 0.84073 * 4 2 1 35 35 H 1.09003 * 110.07607 * 239.65462 * 4 2 1 36 36 H 1.08007 * 126.28990 * 0.05083 * 9 8 6 37 37 H 1.09008 * 109.46949 * 89.99656 * 11 10 9 38 38 H 1.08995 * 109.47403 * 209.99357 * 11 10 9 39 39 H 1.08996 * 109.47088 * 329.99907 * 11 10 9 40 40 H 1.08996 * 112.85427 * 168.49464 * 14 13 12 41 41 H 1.08995 * 113.61262 * 25.51344 * 15 14 13 42 42 H 1.08999 * 113.68571 * 254.62345 * 15 14 13 43 43 H 1.08997 * 113.61220 * 89.11622 * 16 15 14 44 44 H 1.09000 * 113.60928 * 219.93010 * 16 15 14 45 45 H 1.08997 * 113.61474 * 140.02731 * 17 16 15 46 46 H 1.09004 * 113.60937 * 270.92855 * 17 16 15 47 47 H 1.08998 * 110.66276 * 157.51199 * 18 5 4 48 48 H 1.09008 * 110.66083 * 280.62345 * 18 5 4 49 49 H 1.08997 * 109.46979 * 48.64975 * 21 19 18 50 50 H 1.08998 * 109.47069 * 168.65243 * 21 19 18 51 51 H 0.97000 * 120.00208 * 0.02562 * 22 21 19 52 52 H 0.97008 * 120.00184 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7680 1.2230 5 7 2.8805 -1.8849 0.7104 6 6 3.8924 -2.5092 1.3451 7 8 4.5464 -3.3532 0.7632 8 6 4.2063 -2.1688 2.7447 9 6 3.3371 -1.6297 3.6718 10 7 4.0182 -1.4737 4.8182 11 6 3.4788 -0.9305 6.0673 12 7 5.3288 -1.9223 4.6203 13 6 5.4533 -2.3328 3.3884 14 6 6.7061 -2.8904 2.7630 15 6 7.8882 -1.9067 2.7695 16 6 8.7844 -3.1086 3.1118 17 6 7.5354 -3.7706 3.7173 18 6 2.3642 -2.1758 -0.6470 19 6 2.0672 -0.7736 -1.2262 20 1 2.9805 -0.3135 -1.6030 21 6 1.0068 -0.8485 -2.3266 22 7 1.5819 -1.4801 -3.5168 23 6 0.8146 -1.6557 -4.6373 24 1 -0.2145 -1.3281 -4.6437 25 6 1.3594 -2.2545 -5.7648 26 7 2.6137 -2.6533 -5.7571 27 14 0.3124 -2.4946 -7.2930 28 1 -0.1608 -1.1744 -7.7813 29 1 1.1227 -3.1513 -8.3501 30 1 -0.8569 -3.3484 -6.9630 31 1 -0.3634 0.5032 0.8960 32 1 -0.3633 0.5243 -0.8839 33 1 -0.3633 -1.0276 -0.0122 34 1 1.2330 -1.1552 1.8113 35 1 2.6800 -0.1109 1.8378 36 1 2.2996 -1.3797 3.5056 37 1 3.0694 -1.7417 6.6694 38 1 4.2750 -0.4332 6.6210 39 1 2.6905 -0.2126 5.8408 40 1 6.5257 -3.3499 1.7912 41 1 7.8328 -1.1629 3.5643 42 1 8.0988 -1.4688 1.7938 43 1 9.1722 -3.6276 2.2353 44 1 9.5576 -2.8815 3.8458 45 1 7.4606 -4.8372 3.5058 46 1 7.3840 -3.5353 4.7708 47 1 3.1196 -2.6859 -1.2447 48 1 1.4509 -2.7684 -0.5923 49 1 0.1600 -1.4382 -1.9757 50 1 0.6703 0.1578 -2.5760 51 1 2.5063 -1.7739 -3.5111 52 1 2.9944 -3.0722 -6.5449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484371150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:39 Heat of formation + Delta-G solvation = 76.907321 kcal Electronic energy + Delta-G solvation = -30909.517389 eV Core-core repulsion = 26911.724223 eV Total energy + Delta-G solvation = -3997.793166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.71677 -39.77301 -38.55482 -37.69817 -34.63746 -33.52920 -32.88896 -31.19359 -30.73193 -28.81290 -28.09261 -26.66610 -25.67101 -25.60174 -24.87513 -23.47208 -22.28626 -21.54569 -20.97929 -19.50193 -19.08384 -18.80545 -17.45221 -16.77267 -16.53804 -15.92018 -15.70951 -15.55416 -15.39290 -15.06099 -14.72679 -14.64257 -13.92928 -13.76650 -13.43363 -13.38296 -13.18150 -13.12640 -12.77640 -12.55170 -12.51840 -12.41930 -12.27824 -12.20572 -12.02151 -11.78511 -11.61877 -11.26501 -10.96185 -10.80607 -10.79875 -10.58134 -10.50441 -10.41294 -10.35192 -10.23475 -9.97485 -9.68129 -9.60121 -9.48364 -8.84182 -8.81733 -8.48740 -6.88222 -5.71587 -3.00972 1.34990 2.03643 2.07859 3.10660 3.40898 3.46812 3.50935 3.52548 4.06579 4.31533 4.52726 4.55280 4.56456 4.63923 4.64205 4.69672 4.69947 4.86664 4.88695 4.93631 4.97502 5.09510 5.26280 5.34020 5.36101 5.41313 5.51748 5.56213 5.61352 5.63512 5.68464 5.79404 5.80415 5.82392 5.86589 5.90258 5.99777 6.10413 6.11406 6.18208 6.25372 6.27633 6.32424 6.44773 6.45623 6.53141 6.60642 6.74810 6.88277 7.40679 7.72471 7.73663 8.38392 8.46689 9.57597 10.15635 10.49681 11.50956 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.002536 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.851290 B =11037.624808 C =12737.777545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.081 0.919 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.610 3.390 7 O -0.536 6.536 8 C -0.275 4.275 9 C 0.093 3.907 10 N -0.365 5.365 11 C 0.099 3.901 12 N -0.298 5.298 13 C 0.145 3.855 14 C -0.044 4.044 15 C -0.127 4.127 16 C -0.140 4.140 17 C -0.127 4.127 18 C 0.118 3.882 19 C -0.103 4.103 20 H 0.082 0.918 21 C 0.166 3.834 22 N -0.734 5.734 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.183 0.817 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.025 0.975 50 H 0.023 0.977 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 5.845 27.229 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.399 3.601 7 O -0.414 6.414 8 C -0.290 4.290 9 C -0.058 4.058 10 N -0.144 5.144 11 C -0.043 4.043 12 N -0.118 5.118 13 C -0.022 4.022 14 C -0.064 4.064 15 C -0.165 4.165 16 C -0.178 4.178 17 C -0.165 4.165 18 C -0.004 4.004 19 C -0.123 4.123 20 H 0.100 0.900 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.373 4.373 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.200 0.800 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.042 0.958 50 H 0.040 0.960 51 H 0.218 0.782 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.514 5.567 28.141 28.901 hybrid contribution -1.015 -0.173 -1.504 1.823 sum 2.499 5.394 26.637 27.293 Atomic orbital electron populations 1.21905 0.94017 1.02451 1.01848 1.22032 0.96550 0.99297 0.93922 0.90033 1.22320 0.94166 0.88509 0.96993 1.48668 1.33449 1.34893 1.18284 1.16829 0.78488 0.80515 0.84243 1.90763 1.49633 1.33534 1.67431 1.20235 0.95290 1.17466 0.96021 1.23258 0.98753 0.97631 0.86143 1.48281 1.08197 1.47800 1.10088 1.21956 0.99958 0.99432 0.82907 1.77084 0.95863 1.21026 1.17870 1.22186 0.94901 0.95195 0.89942 1.21425 0.87195 0.97433 1.00343 1.22921 0.94830 0.96570 1.02208 1.22800 0.96515 0.97395 1.01043 1.22968 0.95265 0.99126 0.99165 1.22463 0.99509 0.97178 0.81219 1.22449 1.00345 0.94784 0.94728 0.89976 1.20700 0.93303 0.96026 0.86195 1.42402 1.13215 1.72015 1.10168 1.19146 0.94487 1.32818 0.90817 0.91290 1.24746 0.96284 1.01584 0.98288 1.69654 1.12513 1.46196 1.29569 0.86283 0.79229 0.77692 0.83044 1.21335 1.21709 1.21299 0.93143 0.91310 0.92092 0.91797 0.91201 0.79996 0.90378 0.88930 0.89122 0.85374 0.90059 0.91024 0.89828 0.91382 0.91176 0.89676 0.89179 0.90848 0.95775 0.95957 0.78218 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 7.78 37.16 0.29 -1.20 16 2 C -0.10 -1.12 3.53 -89.25 -0.32 -1.44 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 4 C 0.10 1.08 4.95 -2.98 -0.01 1.06 16 5 N -0.62 -8.92 3.29 -171.25 -0.56 -9.49 16 6 C 0.61 9.83 7.79 -12.52 -0.10 9.73 16 7 O -0.54 -10.57 15.28 5.27 0.08 -10.49 16 8 C -0.28 -3.71 5.81 -105.07 -0.61 -4.32 16 9 C 0.09 0.91 9.72 -16.56 -0.16 0.75 16 10 N -0.37 -3.44 3.98 -67.60 -0.27 -3.71 16 11 C 0.10 0.43 11.44 59.85 0.68 1.12 16 12 N -0.30 -3.65 12.09 33.90 0.41 -3.24 16 13 C 0.15 1.95 6.32 -82.02 -0.52 1.43 16 14 C -0.04 -0.56 4.04 -90.81 -0.37 -0.93 16 15 C -0.13 -1.38 7.63 -25.91 -0.20 -1.58 16 16 C -0.14 -1.32 8.07 -25.92 -0.21 -1.53 16 17 C -0.13 -1.36 7.64 -25.77 -0.20 -1.56 16 18 C 0.12 1.95 6.46 -2.32 -0.02 1.94 16 19 C -0.10 -1.63 2.98 -88.93 -0.27 -1.89 16 20 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 21 C 0.17 3.16 4.44 -4.04 -0.02 3.15 16 22 N -0.73 -18.45 5.52 -59.91 -0.33 -18.78 16 23 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 24 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 27 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.78 6.76 -51.93 -0.35 0.42 16 33 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 34 H 0.06 0.53 6.98 -51.93 -0.36 0.17 16 35 H 0.07 0.63 6.87 -51.93 -0.36 0.28 16 36 H 0.18 1.19 6.04 -52.48 -0.32 0.87 16 37 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.13 1.91 6.25 -51.93 -0.32 1.58 16 41 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.91 7.77 -51.93 -0.40 0.51 16 47 H 0.09 1.77 7.81 -51.93 -0.41 1.37 16 48 H 0.07 1.21 7.95 -51.92 -0.41 0.80 16 49 H 0.02 0.46 6.81 -51.93 -0.35 0.11 16 50 H 0.02 0.43 7.37 -51.93 -0.38 0.05 16 51 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 52 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 409.66 15.07 6.17 6.17 Total: -1.00 -35.28 409.66 -9.63 -44.91 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -8.57 Total: 7.58 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.26 Total: -2.63 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.03 Total: -63.08 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.28 -9.63 -44.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484371150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.814 kcal (2) G-P(sol) polarization free energy of solvation -35.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds