Wall clock time and date at job start Wed Apr 1 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.28599 * 2 1 4 4 C 1.54004 * 110.32632 * 122.12924 * 2 1 3 5 5 N 1.47486 * 107.08176 * 120.20155 * 4 2 1 6 6 C 1.34781 * 127.02837 * 154.52110 * 5 4 2 7 7 O 1.21604 * 119.99384 * 185.48064 * 6 5 4 8 8 C 1.47418 * 120.00441 * 5.47623 * 6 5 4 9 9 C 1.38047 * 126.41727 * 24.48637 * 8 6 5 10 10 N 1.34256 * 107.42189 * 180.02562 * 9 8 6 11 11 C 1.46500 * 125.75631 * 179.97438 * 10 9 8 12 12 N 1.39935 * 108.49005 * 359.74936 * 10 9 8 13 13 C 1.30448 * 108.89504 * 0.42554 * 12 10 9 14 14 C 1.50708 * 125.98912 * 179.84926 * 13 12 10 15 15 C 1.53786 * 113.61199 * 299.69439 * 14 13 12 16 16 C 1.53784 * 87.07877 * 140.06263 * 15 14 13 17 17 C 1.53782 * 87.17551 * 334.52479 * 16 15 14 18 18 C 1.48108 * 105.93205 * 334.77946 * 5 4 2 19 19 C 1.54588 * 103.42628 * 39.02384 * 18 5 4 20 20 H 1.08996 * 110.57741 * 81.17010 * 19 18 5 21 21 C 1.53006 * 110.99148 * 204.37395 * 19 18 5 22 22 N 1.46495 * 109.46956 * 288.65023 * 21 19 18 23 23 C 1.36937 * 120.00429 * 180.02562 * 22 21 19 24 24 H 1.08004 * 119.99292 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00815 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99486 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00312 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47250 * 60.00044 * 27 25 23 29 29 H 1.48501 * 109.47005 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47447 * 299.99970 * 27 25 23 31 31 H 1.09001 * 109.47343 * 299.32003 * 1 2 3 32 32 H 1.09003 * 109.47093 * 59.32586 * 1 2 3 33 33 H 1.08998 * 109.46971 * 179.32048 * 1 2 3 34 34 H 1.09003 * 109.91493 * 0.84073 * 4 2 1 35 35 H 1.09003 * 110.07607 * 239.65462 * 4 2 1 36 36 H 1.08007 * 126.28990 * 0.05083 * 9 8 6 37 37 H 1.09008 * 109.46949 * 89.99656 * 11 10 9 38 38 H 1.08995 * 109.47403 * 209.99357 * 11 10 9 39 39 H 1.08996 * 109.47088 * 329.99907 * 11 10 9 40 40 H 1.08996 * 112.85427 * 168.49464 * 14 13 12 41 41 H 1.08995 * 113.61262 * 25.51344 * 15 14 13 42 42 H 1.08999 * 113.68571 * 254.62345 * 15 14 13 43 43 H 1.08997 * 113.61220 * 89.11622 * 16 15 14 44 44 H 1.09000 * 113.60928 * 219.93010 * 16 15 14 45 45 H 1.08997 * 113.61474 * 140.02731 * 17 16 15 46 46 H 1.09004 * 113.60937 * 270.92855 * 17 16 15 47 47 H 1.08998 * 110.66276 * 157.51199 * 18 5 4 48 48 H 1.09008 * 110.66083 * 280.62345 * 18 5 4 49 49 H 1.08997 * 109.46979 * 48.64975 * 21 19 18 50 50 H 1.08998 * 109.47069 * 168.65243 * 21 19 18 51 51 H 0.97000 * 120.00208 * 0.02562 * 22 21 19 52 52 H 0.97008 * 120.00184 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7680 1.2230 5 7 2.8805 -1.8849 0.7104 6 6 3.8924 -2.5092 1.3451 7 8 4.5464 -3.3532 0.7632 8 6 4.2063 -2.1688 2.7447 9 6 3.3371 -1.6297 3.6718 10 7 4.0182 -1.4737 4.8182 11 6 3.4788 -0.9305 6.0673 12 7 5.3288 -1.9223 4.6203 13 6 5.4533 -2.3328 3.3884 14 6 6.7061 -2.8904 2.7630 15 6 7.8882 -1.9067 2.7695 16 6 8.7844 -3.1086 3.1118 17 6 7.5354 -3.7706 3.7173 18 6 2.3642 -2.1758 -0.6470 19 6 2.0672 -0.7736 -1.2262 20 1 2.9805 -0.3135 -1.6030 21 6 1.0068 -0.8485 -2.3266 22 7 1.5819 -1.4801 -3.5168 23 6 0.8146 -1.6557 -4.6373 24 1 -0.2145 -1.3281 -4.6437 25 6 1.3594 -2.2545 -5.7648 26 7 2.6137 -2.6533 -5.7571 27 14 0.3124 -2.4946 -7.2930 28 1 -0.1608 -1.1744 -7.7813 29 1 1.1227 -3.1513 -8.3501 30 1 -0.8569 -3.3484 -6.9630 31 1 -0.3634 0.5032 0.8960 32 1 -0.3633 0.5243 -0.8839 33 1 -0.3633 -1.0276 -0.0122 34 1 1.2330 -1.1552 1.8113 35 1 2.6800 -0.1109 1.8378 36 1 2.2996 -1.3797 3.5056 37 1 3.0694 -1.7417 6.6694 38 1 4.2750 -0.4332 6.6210 39 1 2.6905 -0.2126 5.8408 40 1 6.5257 -3.3499 1.7912 41 1 7.8328 -1.1629 3.5643 42 1 8.0988 -1.4688 1.7938 43 1 9.1722 -3.6276 2.2353 44 1 9.5576 -2.8815 3.8458 45 1 7.4606 -4.8372 3.5058 46 1 7.3840 -3.5353 4.7708 47 1 3.1196 -2.6859 -1.2447 48 1 1.4509 -2.7684 -0.5923 49 1 0.1600 -1.4382 -1.9757 50 1 0.6703 0.1578 -2.5760 51 1 2.5063 -1.7739 -3.5111 52 1 2.9944 -3.0722 -6.5449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484371150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:38 Heat of formation + Delta-G solvation = 53.755827 kcal Electronic energy + Delta-G solvation = -30910.521314 eV Core-core repulsion = 26911.724223 eV Total energy + Delta-G solvation = -3998.797090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.58298 -40.91823 -39.42330 -38.94943 -36.41364 -34.36904 -34.18198 -32.82100 -31.79229 -30.21270 -28.78518 -27.70689 -26.91363 -26.54216 -25.99260 -24.90784 -23.67182 -22.57047 -21.87287 -20.49939 -20.32898 -19.75232 -19.07252 -18.14884 -17.49838 -17.02975 -16.71184 -16.50122 -16.47924 -16.23492 -15.94659 -15.79527 -15.34941 -15.20379 -14.72062 -14.53129 -14.14179 -13.91547 -13.78009 -13.72276 -13.42380 -13.38765 -13.33322 -13.29234 -13.03885 -12.91422 -12.85543 -12.70747 -12.66071 -12.21532 -12.11680 -11.83002 -11.65754 -11.58722 -11.49607 -11.42683 -11.34128 -11.30798 -10.87353 -10.81276 -10.30438 -9.83272 -9.54152 -8.97135 -7.92389 -5.21854 0.53045 1.04289 1.42813 1.47359 1.51170 1.57273 1.98408 2.30354 2.57699 3.27634 3.40609 3.50149 3.54759 3.62743 3.76287 3.79194 3.87727 3.91343 4.00523 4.08758 4.19220 4.22739 4.29691 4.39859 4.44801 4.49290 4.53774 4.57239 4.61933 4.67351 4.74000 4.76063 4.81298 4.85060 4.87584 4.90760 4.93954 5.01948 5.03881 5.04129 5.21174 5.25064 5.27903 5.30070 5.38324 5.42617 5.52147 5.56801 5.59353 5.91167 6.28976 6.50972 6.64441 7.19747 7.34489 8.12094 8.33230 9.31286 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.002536 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.851290 B =11037.624808 C =12737.777545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.099 0.901 4 C 0.101 3.899 5 N -0.618 5.618 6 C 0.603 3.397 7 O -0.591 6.591 8 C -0.313 4.313 9 C 0.121 3.879 10 N -0.356 5.356 11 C 0.086 3.914 12 N -0.313 5.313 13 C 0.129 3.871 14 C -0.058 4.058 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.121 4.121 18 C 0.123 3.877 19 C -0.097 4.097 20 H 0.060 0.940 21 C 0.168 3.832 22 N -0.750 5.750 23 C -0.242 4.242 24 H 0.081 0.919 25 C -0.081 4.081 26 N -0.973 5.973 27 Si 0.975 3.025 28 H -0.275 1.275 29 H -0.299 1.299 30 H -0.276 1.276 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.224 0.776 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.074 0.926 49 H 0.034 0.966 50 H 0.031 0.969 51 H 0.369 0.631 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 8.081 30.435 31.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.117 0.883 4 C -0.020 4.020 5 N -0.350 5.350 6 C 0.395 3.605 7 O -0.473 6.473 8 C -0.328 4.328 9 C -0.032 4.032 10 N -0.133 5.133 11 C -0.053 4.053 12 N -0.135 5.135 13 C -0.038 4.038 14 C -0.078 4.078 15 C -0.161 4.161 16 C -0.167 4.167 17 C -0.159 4.159 18 C 0.000 4.000 19 C -0.117 4.117 20 H 0.078 0.922 21 C 0.041 3.959 22 N -0.393 5.393 23 C -0.374 4.374 24 H 0.099 0.901 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.201 1.201 29 H -0.226 1.226 30 H -0.202 1.202 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.240 0.760 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.145 0.855 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.052 0.948 50 H 0.049 0.951 51 H 0.201 0.799 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.921 7.868 31.425 32.408 hybrid contribution -0.302 -0.807 -2.371 2.523 sum 0.619 7.061 29.054 29.906 Atomic orbital electron populations 1.21899 0.92524 1.02350 1.03208 1.22040 0.97635 0.99496 0.91482 0.88298 1.22643 0.94999 0.87440 0.96929 1.48682 1.33461 1.35673 1.17183 1.17338 0.78004 0.79838 0.85332 1.90728 1.51585 1.36067 1.68917 1.20101 0.96643 1.20863 0.95196 1.23675 0.99521 0.94945 0.85017 1.48732 1.07137 1.46058 1.11370 1.22458 1.01022 1.00702 0.81105 1.77025 0.97866 1.21572 1.16999 1.22239 0.95151 0.95809 0.90563 1.21363 0.88339 0.98668 0.99472 1.22886 0.94418 0.96799 1.01955 1.22771 0.96332 0.96185 1.01400 1.22925 0.95411 0.98736 0.98821 1.22197 0.98005 0.97394 0.82438 1.22280 0.98721 0.94973 0.95743 0.92191 1.20870 0.94243 0.95654 0.85088 1.42700 1.12578 1.72422 1.11569 1.19630 0.95048 1.31195 0.91526 0.90139 1.25630 0.97537 1.02382 1.01702 1.69846 1.14516 1.47981 1.30081 0.85185 0.77559 0.77931 0.78938 1.20099 1.22556 1.20224 0.89401 0.92471 0.92831 0.88199 0.88825 0.76004 0.88895 0.88485 0.85472 0.88611 0.89669 0.91710 0.89690 0.89452 0.91425 0.89384 0.93910 0.90790 0.94782 0.95108 0.79943 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.78 71.98 0.56 -1.80 16 2 C -0.09 -1.73 3.53 -9.90 -0.03 -1.76 16 3 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 4 C 0.10 1.75 4.95 86.53 0.43 2.17 16 5 N -0.62 -17.72 3.29 -813.97 -2.68 -20.40 16 6 C 0.60 20.23 7.79 86.66 0.67 20.90 16 7 O -0.59 -25.57 15.28 -4.04 -0.06 -25.63 16 8 C -0.31 -8.28 5.81 -20.15 -0.12 -8.40 16 9 C 0.12 1.96 9.72 84.28 0.82 2.77 16 10 N -0.36 -5.50 3.98 -367.78 -1.46 -6.96 16 11 C 0.09 0.36 11.44 127.77 1.46 1.82 16 12 N -0.31 -7.26 12.09 -46.67 -0.56 -7.82 16 13 C 0.13 3.50 6.32 43.52 0.28 3.78 16 14 C -0.06 -1.58 4.04 -10.92 -0.04 -1.63 16 15 C -0.12 -2.75 7.63 31.12 0.24 -2.52 16 16 C -0.13 -2.46 8.07 31.12 0.25 -2.20 16 17 C -0.12 -2.67 7.64 31.21 0.24 -2.43 16 18 C 0.12 4.26 6.46 86.61 0.56 4.82 16 19 C -0.10 -3.09 2.98 -9.70 -0.03 -3.12 16 20 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 21 C 0.17 6.40 4.44 86.38 0.38 6.78 16 22 N -0.75 -38.89 5.52 -343.46 -1.90 -40.79 16 23 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 24 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 25 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 26 N -0.97 -62.13 13.06 21.65 0.28 -61.85 16 27 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 28 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 29 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 30 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.10 6.76 -2.39 -0.02 1.09 16 33 H 0.05 0.98 7.51 -2.39 -0.02 0.97 16 34 H 0.10 1.08 6.98 -2.39 -0.02 1.06 16 35 H 0.09 1.24 6.87 -2.39 -0.02 1.23 16 36 H 0.22 1.57 6.04 -2.91 -0.02 1.55 16 37 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.13 -0.33 8.14 -2.39 -0.02 -0.34 16 40 H 0.10 3.23 6.25 -2.39 -0.01 3.21 16 41 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.09 1.88 7.77 -2.39 -0.02 1.86 16 47 H 0.04 1.87 7.81 -2.39 -0.02 1.85 16 48 H 0.07 2.52 7.95 -2.38 -0.02 2.50 16 49 H 0.03 1.26 6.81 -2.39 -0.02 1.24 16 50 H 0.03 1.15 7.37 -2.39 -0.02 1.13 16 51 H 0.37 21.06 7.67 -92.71 -0.71 20.35 16 52 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -83.56 409.66 2.83 -80.73 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.21 Total: 31.59 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 6.97 Total: 2.06 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -6.32 Total: -137.82 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.06 Total: -25.63 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -83.56 2.83 -80.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484371150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.487 kcal (2) G-P(sol) polarization free energy of solvation -83.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds