Wall clock time and date at job start Wed Apr 1 2020 04:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.64135 * 2 1 4 4 C 1.54326 * 110.72270 * 236.85387 * 2 1 3 5 5 N 1.47019 * 107.26897 * 263.82979 * 4 2 1 6 6 C 1.34777 * 125.64729 * 181.02005 * 5 4 2 7 7 O 1.21572 * 120.00526 * 180.02562 * 6 5 4 8 8 C 1.47715 * 119.99812 * 0.02562 * 6 5 4 9 9 N 1.32049 * 126.64821 * 359.97438 * 8 6 5 10 10 N 1.28679 * 110.10477 * 179.97438 * 9 8 6 11 11 H 0.97001 * 124.94556 * 179.67906 * 10 9 8 12 12 C 1.34766 * 110.10303 * 359.95427 * 10 9 8 13 13 C 1.35172 * 107.19049 * 0.16342 * 12 10 9 14 14 C 1.50383 * 126.24079 * 179.00240 * 13 12 10 15 15 C 1.52839 * 109.19413 * 27.63677 * 14 13 12 16 16 C 1.52659 * 109.93028 * 271.60999 * 15 14 13 17 17 C 1.52615 * 110.80381 * 61.47364 * 16 15 14 18 18 C 1.50686 * 127.33639 * 180.90617 * 12 10 9 19 19 C 1.47424 * 108.70916 * 1.28523 * 5 4 2 20 20 C 1.55130 * 104.71824 * 335.55416 * 19 5 4 21 21 H 1.08998 * 111.19339 * 279.18984 * 20 19 5 22 22 C 1.53006 * 110.90586 * 155.27253 * 20 19 5 23 23 N 1.46499 * 109.46825 * 72.97679 * 22 20 19 24 24 C 1.36936 * 119.99813 * 180.02562 * 23 22 20 25 25 H 1.08002 * 120.00217 * 359.97438 * 24 23 22 26 26 C 1.38811 * 119.99995 * 179.97438 * 24 23 22 27 27 N 1.31619 * 120.00146 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99982 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47087 * 89.99883 * 28 26 24 30 30 H 1.48499 * 109.47176 * 209.99553 * 28 26 24 31 31 H 1.48502 * 109.47222 * 329.99916 * 28 26 24 32 32 H 1.09000 * 109.47069 * 181.69261 * 1 2 3 33 33 H 1.08998 * 109.47265 * 301.68998 * 1 2 3 34 34 H 1.08992 * 109.47229 * 61.69204 * 1 2 3 35 35 H 1.08991 * 109.88263 * 144.41065 * 4 2 1 36 36 H 1.09004 * 110.00710 * 23.31842 * 4 2 1 37 37 H 1.09004 * 109.54103 * 148.09634 * 14 13 12 38 38 H 1.08996 * 109.54523 * 268.34864 * 14 13 12 39 39 H 1.09000 * 109.35613 * 151.43682 * 15 14 13 40 40 H 1.08996 * 109.22610 * 31.69646 * 15 14 13 41 41 H 1.08998 * 109.21165 * 301.13842 * 16 15 14 42 42 H 1.08997 * 109.21502 * 181.81549 * 16 15 14 43 43 H 1.08992 * 109.41292 * 273.50979 * 17 16 15 44 44 H 1.09004 * 109.41180 * 153.72658 * 17 16 15 45 45 H 1.09001 * 109.52156 * 346.41757 * 18 12 10 46 46 H 1.09002 * 109.53078 * 106.62371 * 18 12 10 47 47 H 1.09003 * 110.36449 * 94.47723 * 19 5 4 48 48 H 1.09000 * 110.36895 * 216.80541 * 19 5 4 49 49 H 1.09001 * 109.47108 * 192.97487 * 22 20 19 50 50 H 1.08994 * 109.47257 * 312.97432 * 22 20 19 51 51 H 0.96996 * 120.00051 * 359.97438 * 23 22 20 52 52 H 0.96997 * 120.00006 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 2.3716 -2.1519 -0.7424 6 6 2.8850 -3.1453 -1.4948 7 8 3.0890 -4.2378 -1.0020 8 6 3.1998 -2.9067 -2.9181 9 7 3.0317 -1.7790 -3.5842 10 7 3.4113 -1.9255 -4.8050 11 1 3.3775 -1.2338 -5.4842 12 6 3.8571 -3.1817 -5.0038 13 6 3.7365 -3.8390 -3.8289 14 6 4.0911 -5.2783 -3.5749 15 6 5.1944 -5.7025 -4.5438 16 6 4.5773 -6.2221 -5.8398 17 6 3.7616 -5.1309 -6.5275 18 6 4.4082 -3.7647 -6.2794 19 6 2.0075 -2.2536 0.6825 20 6 2.0790 -0.7974 1.2125 21 1 3.1061 -0.5096 1.4367 22 6 1.1814 -0.6180 2.4386 23 7 1.7913 -1.2845 3.5919 24 6 1.1637 -1.2583 4.8087 25 1 0.2193 -0.7458 4.9183 26 6 1.7413 -1.8902 5.9013 27 7 2.8919 -2.5151 5.7677 28 14 0.8855 -1.8537 7.5614 29 1 -0.0202 -3.0249 7.6772 30 1 1.9014 -1.9049 8.6433 31 1 0.0949 -0.6026 7.6834 32 1 -0.3633 -1.0272 0.0304 33 1 -0.3634 0.5398 0.8744 34 1 -0.3633 0.4873 -0.9047 35 1 2.9868 -0.3181 -1.5780 36 1 1.3283 -0.8225 -2.0010 37 1 4.4345 -5.3932 -2.5468 38 1 3.2143 -5.9044 -3.7398 39 1 5.7940 -6.4895 -4.0864 40 1 5.8291 -4.8440 -4.7631 41 1 3.9271 -7.0672 -5.6138 42 1 5.3723 -6.5512 -6.5090 43 1 2.7478 -5.1299 -6.1275 44 1 3.7268 -5.3258 -7.5994 45 1 4.1825 -3.0982 -7.1118 46 1 5.4880 -3.8836 -6.1890 47 1 0.9974 -2.6493 0.7886 48 1 2.7208 -2.8851 1.2122 49 1 1.0662 0.4446 2.6522 50 1 0.2036 -1.0569 2.2405 51 1 2.6393 -1.7451 3.4934 52 1 3.2957 -2.9564 6.5313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484384336.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:54 Heat of formation + Delta-G solvation = 38.403908 kcal Electronic energy + Delta-G solvation = -30982.461279 eV Core-core repulsion = 26982.998480 eV Total energy + Delta-G solvation = -3999.462799 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.04407 -39.85726 -37.90146 -37.73894 -34.59838 -33.20884 -32.73393 -31.30730 -31.08081 -30.68528 -28.86064 -26.57903 -25.80674 -25.72719 -24.68760 -23.88106 -22.55338 -21.49671 -20.14249 -19.86547 -19.13205 -19.03506 -17.89371 -17.17586 -16.68008 -16.24952 -15.88871 -15.30929 -15.24629 -14.90073 -14.69988 -14.42486 -13.84422 -13.68604 -13.57780 -13.54293 -13.38081 -13.13148 -12.83171 -12.61847 -12.45114 -12.28666 -12.18251 -12.03768 -11.70816 -11.61594 -11.48661 -11.39195 -11.06181 -10.95288 -10.79612 -10.75373 -10.59325 -10.40748 -10.30940 -10.24038 -9.93872 -9.81196 -9.61519 -9.47181 -8.83413 -8.81517 -8.38229 -6.86128 -5.70083 -2.99075 1.49118 1.91678 2.58910 3.15871 3.47694 3.48163 3.52741 3.54716 4.16812 4.28561 4.43816 4.47768 4.61563 4.69952 4.75761 4.81933 4.82920 4.96553 5.04079 5.06068 5.11519 5.20529 5.42923 5.47886 5.53059 5.58692 5.61645 5.64641 5.66543 5.71632 5.73158 5.78133 5.88094 5.93083 5.94861 6.02304 6.06746 6.11785 6.13268 6.15686 6.25215 6.30232 6.39224 6.43862 6.50568 6.56955 6.76363 6.79614 6.91340 7.61603 7.73791 7.75251 8.32915 8.48341 9.59378 10.17372 10.51675 11.52691 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.002262 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.942856 B =12374.718858 C =13566.558807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.087 0.913 4 C 0.117 3.883 5 N -0.604 5.604 6 C 0.611 3.389 7 O -0.529 6.529 8 C 0.000 4.000 9 N -0.256 5.256 10 N -0.382 5.382 11 H 0.443 0.557 12 C 0.010 3.990 13 C -0.136 4.136 14 C -0.047 4.047 15 C -0.124 4.124 16 C -0.121 4.121 17 C -0.114 4.114 18 C -0.048 4.048 19 C 0.118 3.882 20 C -0.101 4.101 21 H 0.085 0.915 22 C 0.166 3.834 23 N -0.733 5.733 24 C -0.239 4.239 25 H 0.070 0.930 26 C -0.014 4.014 27 N -0.932 5.932 28 Si 0.906 3.094 29 H -0.290 1.290 30 H -0.292 1.292 31 H -0.282 1.282 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.023 0.977 50 H 0.025 0.975 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 0.212 -31.046 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.105 0.895 4 C -0.006 4.006 5 N -0.338 5.338 6 C 0.397 3.603 7 O -0.404 6.404 8 C -0.160 4.160 9 N -0.092 5.092 10 N -0.095 5.095 11 H 0.287 0.713 12 C -0.116 4.116 13 C -0.146 4.146 14 C -0.085 4.085 15 C -0.161 4.161 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.087 4.087 19 C -0.003 4.003 20 C -0.121 4.121 21 H 0.103 0.897 22 C 0.038 3.962 23 N -0.378 5.378 24 C -0.370 4.370 25 H 0.088 0.912 26 C -0.210 4.210 27 N -0.580 5.580 28 Si 0.738 3.262 29 H -0.217 1.217 30 H -0.218 1.218 31 H -0.208 1.208 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.041 0.959 50 H 0.043 0.957 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.238 0.669 -30.507 30.596 hybrid contribution 0.057 -0.334 0.407 0.530 sum 2.295 0.335 -30.100 30.189 Atomic orbital electron populations 1.21829 0.94212 1.02304 1.01668 1.22234 0.96540 0.99174 0.93967 0.89456 1.22111 1.00368 0.81665 0.96468 1.48350 1.61808 1.11607 1.11987 1.16483 0.77542 0.83409 0.82839 1.90801 1.53956 1.23388 1.72252 1.21717 1.07542 0.91250 0.95511 1.73836 1.18997 1.24421 0.91917 1.43192 1.46408 1.10972 1.08934 0.71326 1.21105 1.06001 0.86301 0.98187 1.19878 1.05719 0.97880 0.91139 1.19946 0.98434 0.89310 1.00826 1.21636 0.98097 1.01147 0.95229 1.21523 0.99465 0.98047 0.96777 1.21519 1.00018 0.93161 1.00523 1.20237 1.00818 0.96591 0.91056 1.22402 1.01278 0.97922 0.78746 1.22656 1.01126 0.93490 0.94808 0.89663 1.20634 0.94171 0.95892 0.85511 1.42395 1.25641 1.64434 1.05297 1.19203 1.02955 1.28241 0.86629 0.91206 1.24749 0.97324 1.00834 0.98115 1.69663 1.18114 1.40024 1.30243 0.86199 0.78336 0.77582 0.84120 1.21741 1.21828 1.20821 0.92398 0.91544 0.93022 0.91298 0.91216 0.89163 0.90866 0.91443 0.91495 0.91627 0.92037 0.91402 0.91274 0.90995 0.89103 0.90992 0.89758 0.95906 0.95696 0.78247 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.91 37.16 0.29 -1.44 16 2 C -0.10 -1.29 3.47 -88.78 -0.31 -1.60 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.52 5.12 -3.06 -0.02 1.51 16 5 N -0.60 -9.67 3.32 -171.54 -0.57 -10.24 16 6 C 0.61 10.44 7.86 -12.39 -0.10 10.34 16 7 O -0.53 -10.51 15.50 5.30 0.08 -10.43 16 8 C 0.00 0.00 6.97 -82.87 -0.58 -0.57 16 9 N -0.26 -3.03 9.79 33.35 0.33 -2.71 16 10 N -0.38 -3.20 6.83 33.42 0.23 -2.97 16 11 H 0.44 1.97 8.96 -190.31 -1.71 0.27 16 12 C 0.01 0.09 6.37 -82.40 -0.53 -0.44 16 13 C -0.14 -1.63 5.69 -104.84 -0.60 -2.23 16 14 C -0.05 -0.53 5.30 -28.12 -0.15 -0.68 16 15 C -0.12 -0.99 5.51 -26.99 -0.15 -1.14 16 16 C -0.12 -0.73 5.65 -27.10 -0.15 -0.89 16 17 C -0.11 -0.64 5.64 -26.84 -0.15 -0.79 16 18 C -0.05 -0.26 5.55 -27.80 -0.15 -0.42 16 19 C 0.12 2.08 6.01 -2.41 -0.01 2.07 16 20 C -0.10 -1.68 2.93 -88.35 -0.26 -1.94 16 21 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 22 C 0.17 3.30 4.54 -4.04 -0.02 3.28 16 23 N -0.73 -18.79 5.55 -59.91 -0.33 -19.12 16 24 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 25 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 26 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 27 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 28 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 31 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 32 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 33 H 0.07 0.83 7.12 -51.93 -0.37 0.46 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 36 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16 37 H 0.09 1.23 6.89 -51.93 -0.36 0.87 16 38 H 0.07 0.81 7.81 -51.93 -0.41 0.41 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.52 5.65 -51.93 -0.29 0.23 16 41 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.48 7.80 -51.93 -0.40 0.07 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 0.46 6.35 -51.93 -0.33 0.13 16 47 H 0.07 1.30 7.46 -51.93 -0.39 0.91 16 48 H 0.08 1.70 8.03 -51.93 -0.42 1.28 16 49 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 50 H 0.03 0.50 6.94 -51.93 -0.36 0.14 16 51 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 52 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -34.54 397.35 -11.55 -46.09 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -9.85 Total: 6.09 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.12 Total: -2.37 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.38 Total: -63.17 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.54 -11.55 -46.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484384336.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.495 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds