Wall clock time and date at job start Wed Apr 1 2020 04:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.64135 * 2 1 4 4 C 1.54326 * 110.72270 * 236.85387 * 2 1 3 5 5 N 1.47019 * 107.26897 * 263.82979 * 4 2 1 6 6 C 1.34777 * 125.64729 * 181.02005 * 5 4 2 7 7 O 1.21572 * 120.00526 * 180.02562 * 6 5 4 8 8 C 1.47715 * 119.99812 * 0.02562 * 6 5 4 9 9 N 1.32049 * 126.64821 * 359.97438 * 8 6 5 10 10 N 1.28679 * 110.10477 * 179.97438 * 9 8 6 11 11 H 0.97001 * 124.94556 * 179.67906 * 10 9 8 12 12 C 1.34766 * 110.10303 * 359.95427 * 10 9 8 13 13 C 1.35172 * 107.19049 * 0.16342 * 12 10 9 14 14 C 1.50383 * 126.24079 * 179.00240 * 13 12 10 15 15 C 1.52839 * 109.19413 * 27.63677 * 14 13 12 16 16 C 1.52659 * 109.93028 * 271.60999 * 15 14 13 17 17 C 1.52615 * 110.80381 * 61.47364 * 16 15 14 18 18 C 1.50686 * 127.33639 * 180.90617 * 12 10 9 19 19 C 1.47424 * 108.70916 * 1.28523 * 5 4 2 20 20 C 1.55130 * 104.71824 * 335.55416 * 19 5 4 21 21 H 1.08998 * 111.19339 * 279.18984 * 20 19 5 22 22 C 1.53006 * 110.90586 * 155.27253 * 20 19 5 23 23 N 1.46499 * 109.46825 * 72.97679 * 22 20 19 24 24 C 1.36936 * 119.99813 * 180.02562 * 23 22 20 25 25 H 1.08002 * 120.00217 * 359.97438 * 24 23 22 26 26 C 1.38811 * 119.99995 * 179.97438 * 24 23 22 27 27 N 1.31619 * 120.00146 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99982 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47087 * 89.99883 * 28 26 24 30 30 H 1.48499 * 109.47176 * 209.99553 * 28 26 24 31 31 H 1.48502 * 109.47222 * 329.99916 * 28 26 24 32 32 H 1.09000 * 109.47069 * 181.69261 * 1 2 3 33 33 H 1.08998 * 109.47265 * 301.68998 * 1 2 3 34 34 H 1.08992 * 109.47229 * 61.69204 * 1 2 3 35 35 H 1.08991 * 109.88263 * 144.41065 * 4 2 1 36 36 H 1.09004 * 110.00710 * 23.31842 * 4 2 1 37 37 H 1.09004 * 109.54103 * 148.09634 * 14 13 12 38 38 H 1.08996 * 109.54523 * 268.34864 * 14 13 12 39 39 H 1.09000 * 109.35613 * 151.43682 * 15 14 13 40 40 H 1.08996 * 109.22610 * 31.69646 * 15 14 13 41 41 H 1.08998 * 109.21165 * 301.13842 * 16 15 14 42 42 H 1.08997 * 109.21502 * 181.81549 * 16 15 14 43 43 H 1.08992 * 109.41292 * 273.50979 * 17 16 15 44 44 H 1.09004 * 109.41180 * 153.72658 * 17 16 15 45 45 H 1.09001 * 109.52156 * 346.41757 * 18 12 10 46 46 H 1.09002 * 109.53078 * 106.62371 * 18 12 10 47 47 H 1.09003 * 110.36449 * 94.47723 * 19 5 4 48 48 H 1.09000 * 110.36895 * 216.80541 * 19 5 4 49 49 H 1.09001 * 109.47108 * 192.97487 * 22 20 19 50 50 H 1.08994 * 109.47257 * 312.97432 * 22 20 19 51 51 H 0.96996 * 120.00051 * 359.97438 * 23 22 20 52 52 H 0.96997 * 120.00006 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 2.3716 -2.1519 -0.7424 6 6 2.8850 -3.1453 -1.4948 7 8 3.0890 -4.2378 -1.0020 8 6 3.1998 -2.9067 -2.9181 9 7 3.0317 -1.7790 -3.5842 10 7 3.4113 -1.9255 -4.8050 11 1 3.3775 -1.2338 -5.4842 12 6 3.8571 -3.1817 -5.0038 13 6 3.7365 -3.8390 -3.8289 14 6 4.0911 -5.2783 -3.5749 15 6 5.1944 -5.7025 -4.5438 16 6 4.5773 -6.2221 -5.8398 17 6 3.7616 -5.1309 -6.5275 18 6 4.4082 -3.7647 -6.2794 19 6 2.0075 -2.2536 0.6825 20 6 2.0790 -0.7974 1.2125 21 1 3.1061 -0.5096 1.4367 22 6 1.1814 -0.6180 2.4386 23 7 1.7913 -1.2845 3.5919 24 6 1.1637 -1.2583 4.8087 25 1 0.2193 -0.7458 4.9183 26 6 1.7413 -1.8902 5.9013 27 7 2.8919 -2.5151 5.7677 28 14 0.8855 -1.8537 7.5614 29 1 -0.0202 -3.0249 7.6772 30 1 1.9014 -1.9049 8.6433 31 1 0.0949 -0.6026 7.6834 32 1 -0.3633 -1.0272 0.0304 33 1 -0.3634 0.5398 0.8744 34 1 -0.3633 0.4873 -0.9047 35 1 2.9868 -0.3181 -1.5780 36 1 1.3283 -0.8225 -2.0010 37 1 4.4345 -5.3932 -2.5468 38 1 3.2143 -5.9044 -3.7398 39 1 5.7940 -6.4895 -4.0864 40 1 5.8291 -4.8440 -4.7631 41 1 3.9271 -7.0672 -5.6138 42 1 5.3723 -6.5512 -6.5090 43 1 2.7478 -5.1299 -6.1275 44 1 3.7268 -5.3258 -7.5994 45 1 4.1825 -3.0982 -7.1118 46 1 5.4880 -3.8836 -6.1890 47 1 0.9974 -2.6493 0.7886 48 1 2.7208 -2.8851 1.2122 49 1 1.0662 0.4446 2.6522 50 1 0.2036 -1.0569 2.2405 51 1 2.6393 -1.7451 3.4934 52 1 3.2957 -2.9564 6.5313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484384336.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:53 Heat of formation + Delta-G solvation = 15.635089 kcal Electronic energy + Delta-G solvation = -30983.448609 eV Core-core repulsion = 26982.998480 eV Total energy + Delta-G solvation = -4000.450130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.89080 -41.15746 -39.13838 -38.47782 -36.45370 -34.39067 -33.87762 -32.84509 -32.02037 -31.53011 -30.39849 -27.76428 -27.27835 -26.45065 -25.47881 -25.33815 -24.10234 -22.83907 -20.88669 -20.55136 -20.44174 -20.23145 -19.03213 -18.67812 -17.98005 -17.30181 -17.04248 -16.60671 -16.48283 -15.98335 -15.73380 -15.53497 -15.33744 -15.23971 -14.70939 -14.44458 -14.29763 -14.18368 -14.08589 -14.04191 -13.66324 -13.44402 -13.24642 -13.06133 -13.00381 -12.75403 -12.70430 -12.63637 -12.32455 -12.14637 -12.07249 -11.88711 -11.64326 -11.63674 -11.55003 -11.50441 -11.35005 -11.29928 -10.99373 -10.90786 -10.38568 -9.75951 -9.58325 -8.99048 -7.93774 -5.23185 0.45795 1.06943 1.46738 1.49478 1.57684 1.72146 2.10519 2.26267 2.56556 3.19858 3.39017 3.46507 3.58154 3.64396 3.82528 3.85927 3.99426 4.05927 4.12307 4.21022 4.23255 4.26040 4.33470 4.38639 4.51478 4.53135 4.58009 4.64473 4.70304 4.79643 4.83081 4.87261 4.93642 4.94838 5.00695 5.03106 5.10799 5.12576 5.15132 5.21538 5.27686 5.29323 5.31404 5.34879 5.42505 5.47290 5.50094 5.50807 5.58917 6.11877 6.27794 6.42813 6.78694 7.05571 7.33512 8.09821 8.31906 9.30110 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.002262 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.942856 B =12374.718858 C =13566.558807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.114 0.886 4 C 0.122 3.878 5 N -0.606 5.606 6 C 0.601 3.399 7 O -0.574 6.574 8 C -0.033 4.033 9 N -0.256 5.256 10 N -0.358 5.358 11 H 0.463 0.537 12 C 0.035 3.965 13 C -0.164 4.164 14 C -0.045 4.045 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.113 4.113 18 C -0.047 4.047 19 C 0.123 3.877 20 C -0.093 4.093 21 H 0.075 0.925 22 C 0.168 3.832 23 N -0.749 5.749 24 C -0.242 4.242 25 H 0.080 0.920 26 C -0.081 4.081 27 N -0.973 5.973 28 Si 0.976 3.024 29 H -0.289 1.289 30 H -0.296 1.296 31 H -0.265 1.265 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.035 0.965 50 H 0.029 0.971 51 H 0.371 0.629 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 2.408 -34.631 34.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.132 0.868 4 C 0.000 4.000 5 N -0.338 5.338 6 C 0.390 3.610 7 O -0.452 6.452 8 C -0.192 4.192 9 N -0.094 5.094 10 N -0.074 5.074 11 H 0.312 0.688 12 C -0.093 4.093 13 C -0.174 4.174 14 C -0.083 4.083 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.151 4.151 18 C -0.085 4.085 19 C 0.001 3.999 20 C -0.112 4.112 21 H 0.094 0.906 22 C 0.042 3.958 23 N -0.391 5.391 24 C -0.374 4.374 25 H 0.098 0.902 26 C -0.273 4.273 27 N -0.624 5.624 28 Si 0.804 3.196 29 H -0.216 1.216 30 H -0.223 1.223 31 H -0.190 1.190 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.047 0.953 51 H 0.202 0.798 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.598 2.939 -34.142 34.306 hybrid contribution 0.223 -0.999 1.402 1.736 sum 1.821 1.940 -32.740 32.848 Atomic orbital electron populations 1.21825 0.93235 1.01642 1.03104 1.22264 0.97229 0.99751 0.91307 0.86758 1.22248 1.01213 0.79800 0.96730 1.48427 1.61471 1.12830 1.11052 1.17041 0.76855 0.82903 0.84238 1.90761 1.55794 1.25178 1.73504 1.21371 1.10300 0.93141 0.94341 1.73721 1.19188 1.23379 0.93106 1.43300 1.44325 1.11526 1.08283 0.68785 1.21524 1.03712 0.85649 0.98375 1.20076 1.06985 0.98109 0.92213 1.19857 0.99170 0.89594 0.99703 1.21608 0.96997 1.01371 0.95524 1.21514 1.00019 0.98142 0.95903 1.21523 0.98758 0.92948 1.01833 1.20442 1.01192 0.96865 0.90040 1.22149 0.99537 0.98173 0.80056 1.22485 1.00218 0.93410 0.95116 0.90632 1.20773 0.94508 0.95653 0.84898 1.42657 1.25304 1.64792 1.06345 1.19662 1.03020 1.27045 0.87625 0.90213 1.25634 0.98275 1.01319 1.02033 1.69843 1.19951 1.41619 1.30951 0.85106 0.77112 0.78057 0.79290 1.21599 1.22313 1.18991 0.94017 0.91692 0.90118 0.90344 0.89777 0.92947 0.91782 0.91592 0.90837 0.92275 0.89959 0.93205 0.88688 0.87506 0.87894 0.91935 0.93583 0.94714 0.95292 0.79789 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 7.91 71.98 0.57 -2.54 16 2 C -0.09 -2.07 3.47 -9.60 -0.03 -2.11 16 3 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.12 3.03 5.12 86.73 0.44 3.47 16 5 N -0.61 -20.23 3.32 -814.90 -2.71 -22.94 16 6 C 0.60 21.98 7.86 86.75 0.68 22.66 16 7 O -0.57 -25.23 15.50 -3.94 -0.06 -25.29 16 8 C -0.03 -0.96 6.97 42.28 0.29 -0.67 16 9 N -0.26 -5.67 9.79 -48.40 -0.47 -6.15 16 10 N -0.36 -4.94 6.83 -48.19 -0.33 -5.27 16 11 H 0.46 2.18 8.96 -219.88 -1.97 0.21 16 12 C 0.03 0.52 6.37 41.40 0.26 0.79 16 13 C -0.16 -3.95 5.69 -20.00 -0.11 -4.06 16 14 C -0.04 -1.08 5.30 29.69 0.16 -0.92 16 15 C -0.12 -1.83 5.51 30.43 0.17 -1.66 16 16 C -0.12 -1.21 5.65 30.35 0.17 -1.04 16 17 C -0.11 -0.91 5.64 30.52 0.17 -0.73 16 18 C -0.05 -0.32 5.55 29.90 0.17 -0.15 16 19 C 0.12 4.66 6.01 86.93 0.52 5.18 16 20 C -0.09 -3.12 2.93 -9.32 -0.03 -3.15 16 21 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 22 C 0.17 6.71 4.54 86.38 0.39 7.11 16 23 N -0.75 -39.45 5.55 -343.45 -1.91 -41.36 16 24 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 25 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 26 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 27 N -0.97 -62.32 13.06 21.65 0.28 -62.04 16 28 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 29 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 30 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 31 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 32 H 0.04 1.05 7.32 -2.39 -0.02 1.04 16 33 H 0.06 1.47 7.12 -2.39 -0.02 1.45 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.84 7.66 -2.39 -0.02 1.82 16 36 H 0.08 1.89 7.48 -2.38 -0.02 1.88 16 37 H 0.05 1.63 6.89 -2.38 -0.02 1.61 16 38 H 0.06 1.57 7.81 -2.39 -0.02 1.55 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.04 5.65 -2.39 -0.01 1.02 16 41 H 0.06 0.69 8.09 -2.39 -0.02 0.67 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.05 0.61 7.80 -2.39 -0.02 0.59 16 44 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 45 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.10 0.58 6.35 -2.39 -0.02 0.56 16 47 H 0.06 2.43 7.46 -2.39 -0.02 2.42 16 48 H 0.05 2.06 8.03 -2.39 -0.02 2.04 16 49 H 0.04 1.34 8.05 -2.39 -0.02 1.32 16 50 H 0.03 1.16 6.94 -2.39 -0.02 1.14 16 51 H 0.37 21.24 7.67 -92.71 -0.71 20.53 16 52 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -80.22 397.35 0.23 -79.99 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -1.74 Total: 28.63 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.13 Total: 4.80 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -5.14 Total: -137.75 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.06 Total: -25.29 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -80.22 0.23 -79.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484384336.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.629 kcal (2) G-P(sol) polarization free energy of solvation -80.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds