Wall clock time and date at job start Wed Apr 1 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.64009 * 2 1 4 4 C 1.54322 * 110.71873 * 123.13408 * 2 1 3 5 5 N 1.47026 * 107.26731 * 96.16871 * 4 2 1 6 6 C 1.34780 * 125.64580 * 178.90601 * 5 4 2 7 7 O 1.21280 * 119.99671 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00224 * 0.02620 * 6 5 4 9 9 C 1.50692 * 109.47341 * 180.02562 * 8 6 5 10 10 C 1.34858 * 125.96731 * 124.71595 * 9 8 6 11 11 N 1.36311 * 106.69193 * 179.89132 * 10 9 8 12 12 C 1.35425 * 107.39948 * 0.39615 * 11 10 9 13 13 N 1.30092 * 108.62442 * 359.72866 * 12 11 10 14 14 C 1.51036 * 123.98350 * 179.68092 * 12 11 10 15 15 C 1.53391 * 108.21804 * 344.08568 * 14 12 11 16 16 C 1.53148 * 109.24692 * 48.79362 * 15 14 12 17 17 C 1.46468 * 127.77731 * 180.22338 * 11 10 9 18 18 C 1.47418 * 108.70544 * 358.94322 * 5 4 2 19 19 C 1.54909 * 104.83141 * 24.12511 * 18 5 4 20 20 H 1.09000 * 111.00575 * 81.06483 * 19 18 5 21 21 C 1.52999 * 111.00513 * 204.91782 * 19 18 5 22 22 N 1.46510 * 109.47093 * 287.19524 * 21 19 18 23 23 C 1.36936 * 120.00047 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99773 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99683 * 180.02562 * 23 22 21 26 26 N 1.31620 * 119.99845 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00422 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.46860 * 89.99876 * 27 25 23 29 29 H 1.48497 * 109.47392 * 209.99928 * 27 25 23 30 30 H 1.48498 * 109.46696 * 330.00197 * 27 25 23 31 31 H 1.08993 * 109.47070 * 298.31953 * 1 2 3 32 32 H 1.08997 * 109.46759 * 58.31483 * 1 2 3 33 33 H 1.09000 * 109.47239 * 178.31416 * 1 2 3 34 34 H 1.08999 * 109.88752 * 215.59028 * 4 2 1 35 35 H 1.09001 * 109.88234 * 336.60339 * 4 2 1 36 36 H 1.09003 * 109.47358 * 300.00445 * 8 6 5 37 37 H 1.08998 * 109.47198 * 60.00286 * 8 6 5 38 38 H 1.07999 * 126.65303 * 359.97438 * 10 9 8 39 39 H 1.08991 * 109.71941 * 103.74319 * 14 12 11 40 40 H 1.09009 * 109.71344 * 224.38499 * 14 12 11 41 41 H 1.08999 * 109.49887 * 288.87299 * 15 14 12 42 42 H 1.08996 * 109.55451 * 168.75085 * 15 14 12 43 43 H 1.09004 * 109.46925 * 170.51858 * 16 15 14 44 44 H 1.09004 * 109.46569 * 50.53275 * 16 15 14 45 45 H 1.09007 * 109.58504 * 282.87255 * 17 11 10 46 46 H 1.08999 * 109.58438 * 43.28981 * 17 11 10 47 47 H 1.09004 * 110.36674 * 142.96418 * 18 5 4 48 48 H 1.08998 * 110.36982 * 265.17605 * 18 5 4 49 49 H 1.08998 * 109.47279 * 47.19415 * 21 19 18 50 50 H 1.09002 * 109.47121 * 167.19866 * 21 19 18 51 51 H 0.97001 * 119.99446 * 0.02562 * 22 21 19 52 52 H 0.96999 * 120.00347 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7890 1.2087 5 7 2.3715 -2.1518 0.7429 6 6 2.8861 -3.1447 1.4951 7 8 3.0903 -4.2345 1.0034 8 6 3.2078 -2.9009 2.9470 9 6 3.7669 -4.1608 3.5561 10 6 4.9487 -4.2745 4.1957 11 7 5.0589 -5.5758 4.5862 12 6 3.9447 -6.2205 4.1657 13 7 3.1780 -5.3677 3.5517 14 6 3.6823 -7.6901 4.3955 15 6 5.0056 -8.3574 4.7909 16 6 5.6743 -7.5362 5.8972 17 6 6.1605 -6.2019 5.3209 18 6 2.0126 -2.2521 -0.6834 19 6 2.0790 -0.7976 -1.2123 20 1 3.1061 -0.5099 -1.4365 21 6 1.1816 -0.6184 -2.4384 22 7 1.7915 -1.2851 -3.5917 23 6 1.1639 -1.2590 -4.8085 24 1 0.2195 -0.7465 -4.9181 25 6 1.7415 -1.8911 -5.9009 26 7 1.1386 -1.8656 -7.0707 27 14 3.3753 -2.7768 -5.7115 28 1 3.1301 -4.1926 -5.3363 29 1 4.1175 -2.7267 -6.9966 30 1 4.1767 -2.1153 -4.6507 31 1 -0.3633 0.4875 0.9046 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3634 -1.0272 -0.0302 34 1 2.9868 -0.3178 1.5783 35 1 1.3273 -0.8196 2.0002 36 1 3.9444 -2.1013 3.0267 37 1 2.3000 -2.6127 3.4769 38 1 5.6677 -3.4869 4.3666 39 1 2.9549 -7.8127 5.1978 40 1 3.3008 -8.1430 3.4802 41 1 5.6636 -8.4030 3.9232 42 1 4.8111 -9.3666 5.1538 43 1 6.5235 -8.0899 6.2978 44 1 4.9553 -7.3472 6.6944 45 1 6.9968 -6.3791 4.6445 46 1 6.4771 -5.5470 6.1327 47 1 2.7294 -2.8809 -1.2117 48 1 1.0047 -2.6520 -0.7938 49 1 0.2037 -1.0573 -2.2403 50 1 1.0664 0.4443 -2.6521 51 1 2.6394 -1.7456 -3.4930 52 1 1.5420 -2.3076 -7.8340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501115810.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:25 Heat of formation + Delta-G solvation = 33.126238 kcal Electronic energy + Delta-G solvation = -30328.113178 eV Core-core repulsion = 26328.421521 eV Total energy + Delta-G solvation = -3999.691656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.50598 -40.05085 -37.98996 -36.90905 -34.76314 -33.49605 -32.83366 -31.92223 -31.29232 -29.52720 -29.07649 -27.74037 -26.51091 -25.45804 -24.21413 -22.90598 -22.59031 -21.51954 -20.71302 -19.43155 -19.33729 -18.93246 -17.49558 -17.10246 -16.92355 -16.20961 -16.00470 -15.40116 -14.99656 -14.72743 -14.60476 -14.47401 -14.38459 -13.97708 -13.93678 -13.90613 -13.64810 -13.07547 -12.88047 -12.74763 -12.62427 -12.55952 -12.37367 -12.11656 -11.97514 -11.78573 -11.64794 -11.63020 -11.52376 -11.44809 -11.22907 -10.85073 -10.50938 -10.44703 -10.28813 -10.02815 -9.97141 -9.65420 -9.56669 -9.52922 -8.83767 -8.45031 -8.35047 -7.17727 -5.71743 -3.06993 1.85214 2.52377 2.85361 2.89096 3.29686 3.44112 3.48258 3.52050 3.93812 4.07290 4.14713 4.22475 4.48379 4.56405 4.63837 4.65400 4.76199 4.82399 4.84642 4.88189 4.92530 5.00228 5.12278 5.18763 5.23599 5.28280 5.33641 5.39029 5.44969 5.48154 5.51487 5.53992 5.60570 5.66782 5.72190 5.74967 5.82800 5.89425 6.00954 6.13977 6.14255 6.20221 6.26733 6.40378 6.45969 6.60071 6.66430 6.79354 7.01767 7.70308 8.04019 8.06430 8.41566 8.47280 9.26339 9.99140 10.18548 11.46619 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.002285 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.405269 B =12253.466859 C =13728.743243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.089 0.911 4 C 0.105 3.895 5 N -0.623 5.623 6 C 0.528 3.472 7 O -0.519 6.519 8 C -0.047 4.047 9 C 0.018 3.982 10 C -0.051 4.051 11 N -0.458 5.458 12 C 0.206 3.794 13 N -0.457 5.457 14 C -0.033 4.033 15 C -0.126 4.126 16 C -0.134 4.134 17 C 0.104 3.896 18 C 0.116 3.884 19 C -0.107 4.107 20 H 0.083 0.917 21 C 0.169 3.831 22 N -0.757 5.757 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.004 3.996 26 N -0.935 5.935 27 Si 0.883 3.117 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.173 0.827 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.034 0.966 50 H 0.032 0.968 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.512 -4.585 33.551 35.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.107 0.893 4 C -0.018 4.018 5 N -0.359 5.359 6 C 0.315 3.685 7 O -0.393 6.393 8 C -0.088 4.088 9 C -0.112 4.112 10 C -0.184 4.184 11 N -0.142 5.142 12 C -0.056 4.056 13 N -0.175 5.175 14 C -0.072 4.072 15 C -0.164 4.164 16 C -0.172 4.172 17 C -0.019 4.019 18 C -0.006 4.006 19 C -0.126 4.126 20 H 0.101 0.899 21 C 0.042 3.958 22 N -0.403 5.403 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.191 4.191 26 N -0.583 5.583 27 Si 0.713 3.287 28 H -0.209 1.209 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.190 0.810 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.052 0.948 50 H 0.049 0.951 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.859 -5.436 32.895 34.498 hybrid contribution 2.108 -0.244 0.301 2.143 sum 10.967 -5.680 33.195 35.419 Atomic orbital electron populations 1.21853 0.93937 1.02530 1.01949 1.22169 0.96752 0.99063 0.93495 0.89270 1.22129 0.99817 0.82490 0.97389 1.48572 1.63971 1.11539 1.11816 1.20074 0.77278 0.83369 0.87740 1.90750 1.51907 1.23309 1.73373 1.19820 1.02436 0.94154 0.92366 1.19943 0.93757 0.93737 1.03783 1.22163 1.01319 0.86850 1.08028 1.45291 1.17439 1.08424 1.43078 1.23268 0.85100 0.96776 1.00471 1.69950 1.30201 0.99807 1.17563 1.20173 0.97910 0.85578 1.03571 1.21679 0.96501 0.99460 0.98780 1.21894 1.01968 0.94457 0.98871 1.21953 0.88454 0.95208 0.96241 1.22274 1.01192 0.97364 0.79728 1.22664 1.00968 0.93885 0.95111 0.89865 1.20625 0.94338 0.96231 0.84606 1.42754 1.24803 1.65646 1.07061 1.19037 1.04296 1.29043 0.84850 0.89186 1.24661 0.98347 1.00641 0.95482 1.69702 1.39712 1.48752 1.00096 0.86572 0.85030 0.80362 0.76736 1.20945 1.21768 1.20381 0.92818 0.91365 0.92237 0.91676 0.91397 0.88143 0.88110 0.80982 0.89426 0.88593 0.91070 0.89926 0.89335 0.90608 0.89894 0.89339 0.90674 0.91044 0.94824 0.95065 0.80688 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.91 37.16 0.29 -1.30 16 2 C -0.10 -1.07 3.47 -88.79 -0.31 -1.38 16 3 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 4 C 0.11 1.08 6.07 -3.06 -0.02 1.06 16 5 N -0.62 -8.91 3.33 -170.52 -0.57 -9.47 16 6 C 0.53 8.34 7.84 -10.98 -0.09 8.25 16 7 O -0.52 -10.77 15.82 5.56 0.09 -10.68 16 8 C -0.05 -0.54 5.46 -29.04 -0.16 -0.70 16 9 C 0.02 0.24 5.87 -82.72 -0.49 -0.25 16 10 C -0.05 -0.54 11.53 -16.76 -0.19 -0.73 16 11 N -0.46 -4.55 3.13 -113.76 -0.36 -4.91 16 12 C 0.21 2.52 7.65 -155.24 -1.19 1.33 16 13 N -0.46 -7.14 10.62 -6.88 -0.07 -7.22 16 14 C -0.03 -0.28 6.33 -27.52 -0.17 -0.45 16 15 C -0.13 -0.68 5.96 -26.45 -0.16 -0.84 16 16 C -0.13 -0.55 5.94 -26.52 -0.16 -0.71 16 17 C 0.10 0.57 6.98 -3.92 -0.03 0.55 16 18 C 0.12 1.94 6.00 -2.53 -0.02 1.93 16 19 C -0.11 -1.63 2.91 -88.48 -0.26 -1.88 16 20 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 21 C 0.17 3.21 4.54 -4.04 -0.02 3.19 16 22 N -0.76 -18.36 5.35 -59.90 -0.32 -18.68 16 23 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 24 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 25 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 26 N -0.93 -30.00 13.97 55.49 0.78 -29.23 16 27 Si 0.88 23.10 27.74 -169.99 -4.71 18.38 16 28 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 30 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.79 7.12 -51.93 -0.37 0.43 16 33 H 0.06 0.73 7.35 -51.93 -0.38 0.35 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 36 H 0.10 0.82 8.11 -51.93 -0.42 0.40 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.08 0.32 8.12 -51.93 -0.42 -0.10 16 45 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 48 H 0.07 1.25 7.49 -51.93 -0.39 0.87 16 49 H 0.03 0.65 6.94 -51.93 -0.36 0.29 16 50 H 0.03 0.59 8.05 -51.93 -0.42 0.17 16 51 H 0.36 8.71 5.53 -40.82 -0.23 8.49 16 52 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 407.81 15.07 6.15 6.15 Total: -1.00 -39.35 407.81 -11.13 -50.48 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.90 Total: 4.23 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.21 Total: 0.95 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -0.54 Total: -69.51 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.71 Total: 18.38 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -39.35 -11.13 -50.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501115810.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.604 kcal (2) G-P(sol) polarization free energy of solvation -39.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds