Wall clock time and date at job start Wed Apr 1 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.64009 * 2 1 4 4 C 1.54322 * 110.71873 * 123.13408 * 2 1 3 5 5 N 1.47026 * 107.26731 * 96.16871 * 4 2 1 6 6 C 1.34780 * 125.64580 * 178.90601 * 5 4 2 7 7 O 1.21280 * 119.99671 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00224 * 0.02620 * 6 5 4 9 9 C 1.50692 * 109.47341 * 180.02562 * 8 6 5 10 10 C 1.34858 * 125.96731 * 124.71595 * 9 8 6 11 11 N 1.36311 * 106.69193 * 179.89132 * 10 9 8 12 12 C 1.35425 * 107.39948 * 0.39615 * 11 10 9 13 13 N 1.30092 * 108.62442 * 359.72866 * 12 11 10 14 14 C 1.51036 * 123.98350 * 179.68092 * 12 11 10 15 15 C 1.53391 * 108.21804 * 344.08568 * 14 12 11 16 16 C 1.53148 * 109.24692 * 48.79362 * 15 14 12 17 17 C 1.46468 * 127.77731 * 180.22338 * 11 10 9 18 18 C 1.47418 * 108.70544 * 358.94322 * 5 4 2 19 19 C 1.54909 * 104.83141 * 24.12511 * 18 5 4 20 20 H 1.09000 * 111.00575 * 81.06483 * 19 18 5 21 21 C 1.52999 * 111.00513 * 204.91782 * 19 18 5 22 22 N 1.46510 * 109.47093 * 287.19524 * 21 19 18 23 23 C 1.36936 * 120.00047 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99773 * 0.02562 * 23 22 21 25 25 C 1.38809 * 119.99683 * 180.02562 * 23 22 21 26 26 N 1.31620 * 119.99845 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00422 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.46860 * 89.99876 * 27 25 23 29 29 H 1.48497 * 109.47392 * 209.99928 * 27 25 23 30 30 H 1.48498 * 109.46696 * 330.00197 * 27 25 23 31 31 H 1.08993 * 109.47070 * 298.31953 * 1 2 3 32 32 H 1.08997 * 109.46759 * 58.31483 * 1 2 3 33 33 H 1.09000 * 109.47239 * 178.31416 * 1 2 3 34 34 H 1.08999 * 109.88752 * 215.59028 * 4 2 1 35 35 H 1.09001 * 109.88234 * 336.60339 * 4 2 1 36 36 H 1.09003 * 109.47358 * 300.00445 * 8 6 5 37 37 H 1.08998 * 109.47198 * 60.00286 * 8 6 5 38 38 H 1.07999 * 126.65303 * 359.97438 * 10 9 8 39 39 H 1.08991 * 109.71941 * 103.74319 * 14 12 11 40 40 H 1.09009 * 109.71344 * 224.38499 * 14 12 11 41 41 H 1.08999 * 109.49887 * 288.87299 * 15 14 12 42 42 H 1.08996 * 109.55451 * 168.75085 * 15 14 12 43 43 H 1.09004 * 109.46925 * 170.51858 * 16 15 14 44 44 H 1.09004 * 109.46569 * 50.53275 * 16 15 14 45 45 H 1.09007 * 109.58504 * 282.87255 * 17 11 10 46 46 H 1.08999 * 109.58438 * 43.28981 * 17 11 10 47 47 H 1.09004 * 110.36674 * 142.96418 * 18 5 4 48 48 H 1.08998 * 110.36982 * 265.17605 * 18 5 4 49 49 H 1.08998 * 109.47279 * 47.19415 * 21 19 18 50 50 H 1.09002 * 109.47121 * 167.19866 * 21 19 18 51 51 H 0.97001 * 119.99446 * 0.02562 * 22 21 19 52 52 H 0.96999 * 120.00347 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7890 1.2087 5 7 2.3715 -2.1518 0.7429 6 6 2.8861 -3.1447 1.4951 7 8 3.0903 -4.2345 1.0034 8 6 3.2078 -2.9009 2.9470 9 6 3.7669 -4.1608 3.5561 10 6 4.9487 -4.2745 4.1957 11 7 5.0589 -5.5758 4.5862 12 6 3.9447 -6.2205 4.1657 13 7 3.1780 -5.3677 3.5517 14 6 3.6823 -7.6901 4.3955 15 6 5.0056 -8.3574 4.7909 16 6 5.6743 -7.5362 5.8972 17 6 6.1605 -6.2019 5.3209 18 6 2.0126 -2.2521 -0.6834 19 6 2.0790 -0.7976 -1.2123 20 1 3.1061 -0.5099 -1.4365 21 6 1.1816 -0.6184 -2.4384 22 7 1.7915 -1.2851 -3.5917 23 6 1.1639 -1.2590 -4.8085 24 1 0.2195 -0.7465 -4.9181 25 6 1.7415 -1.8911 -5.9009 26 7 1.1386 -1.8656 -7.0707 27 14 3.3753 -2.7768 -5.7115 28 1 3.1301 -4.1926 -5.3363 29 1 4.1175 -2.7267 -6.9966 30 1 4.1767 -2.1153 -4.6507 31 1 -0.3633 0.4875 0.9046 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3634 -1.0272 -0.0302 34 1 2.9868 -0.3178 1.5783 35 1 1.3273 -0.8196 2.0002 36 1 3.9444 -2.1013 3.0267 37 1 2.3000 -2.6127 3.4769 38 1 5.6677 -3.4869 4.3666 39 1 2.9549 -7.8127 5.1978 40 1 3.3008 -8.1430 3.4802 41 1 5.6636 -8.4030 3.9232 42 1 4.8111 -9.3666 5.1538 43 1 6.5235 -8.0899 6.2978 44 1 4.9553 -7.3472 6.6944 45 1 6.9968 -6.3791 4.6445 46 1 6.4771 -5.5470 6.1327 47 1 2.7294 -2.8809 -1.2117 48 1 1.0047 -2.6520 -0.7938 49 1 0.2037 -1.0573 -2.2403 50 1 1.0664 0.4443 -2.6521 51 1 2.6394 -1.7456 -3.4930 52 1 1.5420 -2.3076 -7.8340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501115810.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:24 Heat of formation + Delta-G solvation = 6.462929 kcal Electronic energy + Delta-G solvation = -30329.269386 eV Core-core repulsion = 26328.421521 eV Total energy + Delta-G solvation = -4000.847864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.25929 -41.19714 -39.18071 -37.50639 -36.58417 -34.30557 -34.16300 -33.16805 -32.73105 -30.80705 -29.84772 -28.65513 -27.43033 -26.94630 -24.96221 -24.42921 -23.15761 -23.05396 -21.58835 -20.71053 -20.19855 -19.90014 -19.31538 -18.11348 -17.75241 -17.26115 -16.80724 -16.68404 -16.38176 -15.93768 -15.70380 -15.40835 -15.12592 -15.05097 -14.90516 -14.69516 -14.57225 -14.50679 -14.28985 -14.09425 -13.82459 -13.57305 -13.45043 -13.13238 -13.07821 -13.07333 -12.83801 -12.65155 -12.59971 -12.20051 -12.08202 -11.97335 -11.88781 -11.86389 -11.62308 -11.55054 -11.46826 -10.99402 -10.92146 -10.72008 -10.40848 -9.60870 -9.30998 -9.14806 -8.05796 -5.37933 1.08789 1.32298 1.36700 1.41648 1.71923 1.84558 1.96661 2.31498 2.43918 3.25489 3.31351 3.36707 3.57717 3.60486 3.69632 3.75746 3.78366 3.89675 3.98479 4.16083 4.17160 4.26031 4.31011 4.33501 4.37082 4.42675 4.51507 4.52262 4.56549 4.61531 4.74884 4.78071 4.79709 4.81462 4.86216 4.93583 4.95909 4.98648 5.02759 5.07556 5.15982 5.23573 5.24891 5.32602 5.34267 5.41581 5.53853 5.74016 5.81673 6.18852 6.32330 6.61368 7.05054 7.25912 7.26535 7.82410 7.99229 9.15726 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.002285 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.405269 B =12253.466859 C =13728.743243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.120 0.880 4 C 0.102 3.898 5 N -0.620 5.620 6 C 0.519 3.481 7 O -0.583 6.583 8 C -0.034 4.034 9 C -0.025 4.025 10 C -0.040 4.040 11 N -0.456 5.456 12 C 0.186 3.814 13 N -0.517 5.517 14 C -0.036 4.036 15 C -0.121 4.121 16 C -0.128 4.128 17 C 0.094 3.906 18 C 0.117 3.883 19 C -0.097 4.097 20 H 0.086 0.914 21 C 0.167 3.833 22 N -0.762 5.762 23 C -0.229 4.229 24 H 0.062 0.938 25 C -0.062 4.062 26 N -0.981 5.981 27 Si 0.947 3.053 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.255 1.255 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.210 0.790 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.040 0.960 48 H 0.052 0.948 49 H 0.029 0.971 50 H 0.040 0.960 51 H 0.362 0.638 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.098 -3.140 37.726 39.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.138 0.862 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.309 3.691 7 O -0.462 6.462 8 C -0.075 4.075 9 C -0.154 4.154 10 C -0.174 4.174 11 N -0.139 5.139 12 C -0.077 4.077 13 N -0.236 5.236 14 C -0.075 4.075 15 C -0.159 4.159 16 C -0.166 4.166 17 C -0.026 4.026 18 C -0.006 4.006 19 C -0.117 4.117 20 H 0.104 0.896 21 C 0.041 3.959 22 N -0.407 5.407 23 C -0.360 4.360 24 H 0.080 0.920 25 C -0.253 4.253 26 N -0.632 5.632 27 Si 0.775 3.225 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.179 1.179 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.227 0.773 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.132 0.868 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.047 0.953 50 H 0.058 0.942 51 H 0.194 0.806 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.452 -3.940 37.152 39.076 hybrid contribution 1.187 -0.672 -0.969 1.673 sum 12.640 -4.612 36.183 38.604 Atomic orbital electron populations 1.21864 0.93966 1.01413 1.03058 1.22224 0.96665 1.00090 0.91364 0.86165 1.22457 1.02269 0.79869 0.97311 1.48661 1.63122 1.13192 1.10495 1.21007 0.76140 0.82518 0.89417 1.90716 1.54648 1.25961 1.74853 1.19890 1.04261 0.94742 0.88558 1.20427 0.95359 0.93909 1.05733 1.22735 1.00713 0.87803 1.06195 1.45593 1.17615 1.08247 1.42424 1.23774 0.85751 0.97782 1.00413 1.69870 1.32652 1.01569 1.19504 1.20307 1.00034 0.84106 1.03077 1.21674 0.94608 1.00543 0.99050 1.21914 1.02866 0.93743 0.98058 1.22349 0.87280 0.96224 0.96779 1.22039 0.99058 0.97781 0.81720 1.22507 1.00443 0.93723 0.95006 0.89589 1.20800 0.94741 0.95836 0.84493 1.42842 1.24806 1.66080 1.07021 1.19059 1.03168 1.27179 0.86592 0.91955 1.25420 1.02254 1.02368 0.95302 1.69860 1.41708 1.50590 1.01034 0.85520 0.81026 0.78719 0.77204 1.21477 1.21651 1.17945 0.89740 0.92421 0.94346 0.88124 0.88886 0.84126 0.86467 0.77314 0.88466 0.90501 0.92128 0.87819 0.86471 0.90512 0.89188 0.86826 0.94165 0.93006 0.95322 0.94173 0.80565 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 7.91 71.98 0.57 -2.28 16 2 C -0.08 -1.60 3.47 -9.61 -0.03 -1.63 16 3 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.10 1.68 6.07 86.73 0.53 2.21 16 5 N -0.62 -16.97 3.33 -811.80 -2.70 -19.67 16 6 C 0.52 16.25 7.84 87.66 0.69 16.93 16 7 O -0.58 -25.36 15.82 -3.03 -0.05 -25.41 16 8 C -0.03 -0.71 5.46 29.10 0.16 -0.56 16 9 C -0.03 -0.65 5.87 41.40 0.24 -0.41 16 10 C -0.04 -0.77 11.53 83.22 0.96 0.19 16 11 N -0.46 -8.35 3.13 -513.82 -1.61 -9.96 16 12 C 0.19 4.59 7.65 138.23 1.06 5.65 16 13 N -0.52 -16.67 10.62 -175.69 -1.86 -18.53 16 14 C -0.04 -0.63 6.33 30.09 0.19 -0.44 16 15 C -0.12 -1.15 5.96 30.77 0.18 -0.96 16 16 C -0.13 -0.70 5.94 30.73 0.18 -0.51 16 17 C 0.09 0.78 6.98 86.47 0.60 1.38 16 18 C 0.12 3.98 6.00 86.86 0.52 4.51 16 19 C -0.10 -2.83 2.91 -9.40 -0.03 -2.86 16 20 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 21 C 0.17 6.31 4.54 86.38 0.39 6.70 16 22 N -0.76 -37.23 5.35 -343.44 -1.84 -39.07 16 23 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16 24 H 0.06 3.97 8.06 -2.91 -0.02 3.94 16 25 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 26 N -0.98 -64.87 13.97 21.65 0.30 -64.56 16 27 Si 0.95 48.63 27.74 68.60 1.90 50.53 16 28 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 29 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 30 H -0.25 -11.96 6.52 99.48 0.65 -11.31 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.25 7.12 -2.39 -0.02 1.23 16 33 H 0.04 0.91 7.35 -2.39 -0.02 0.89 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.15 7.84 -2.39 -0.02 1.14 16 36 H 0.14 1.67 8.11 -2.39 -0.02 1.65 16 37 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 42 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.08 0.44 8.12 -2.39 -0.02 0.42 16 45 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.04 1.62 8.04 -2.38 -0.02 1.60 16 48 H 0.05 1.92 7.49 -2.39 -0.02 1.91 16 49 H 0.03 1.13 6.94 -2.39 -0.02 1.11 16 50 H 0.04 1.48 8.05 -2.39 -0.02 1.46 16 51 H 0.36 17.42 5.53 -92.71 -0.51 16.91 16 52 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -93.18 407.81 2.04 -91.14 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.33 Total: 23.61 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 7.56 Total: 11.92 kcal Atomic # 7 Polarization: -144.09 SS G_CDS: -7.71 Total: -151.80 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.90 Total: 50.53 kcal Total: -93.18 2.04 -91.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501115810.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.604 kcal (2) G-P(sol) polarization free energy of solvation -93.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds