Wall clock time and date at job start Wed Apr 1 2020 04:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46299 * 2 1 4 4 C 1.53041 * 109.45715 * 240.02287 * 2 1 3 5 5 C 1.53196 * 109.31301 * 178.61751 * 4 2 1 6 6 N 1.46922 * 108.77471 * 54.63369 * 5 4 2 7 7 C 1.34780 * 120.62872 * 126.41351 * 6 5 4 8 8 O 1.21280 * 120.00114 * 174.08899 * 7 6 5 9 9 C 1.50704 * 119.99722 * 354.09163 * 7 6 5 10 10 H 1.08993 * 109.49708 * 323.04709 * 9 7 6 11 11 C 1.53112 * 109.49495 * 202.97800 * 9 7 6 12 12 C 1.53262 * 109.72445 * 170.18624 * 11 9 7 13 13 N 1.46470 * 108.72243 * 50.69063 * 12 11 9 14 14 C 1.34403 * 128.44507 * 162.71196 * 13 12 11 15 15 N 1.30781 * 108.55729 * 180.21918 * 14 13 12 16 16 C 1.34426 * 109.31901 * 359.93152 * 15 14 13 17 17 C 1.33863 * 107.79829 * 359.97438 * 16 15 14 18 18 C 1.50715 * 128.68069 * 180.12761 * 17 16 15 19 19 C 1.46921 * 118.74208 * 306.39287 * 6 5 4 20 20 H 1.08992 * 109.58861 * 293.82257 * 19 6 5 21 21 C 1.53004 * 109.58759 * 173.39241 * 19 6 5 22 22 N 1.46497 * 109.46890 * 73.00819 * 21 19 6 23 23 C 1.36933 * 120.00271 * 174.29137 * 22 21 19 24 24 H 1.08004 * 119.99700 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00420 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00099 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00351 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47393 * 59.99884 * 27 25 23 29 29 H 1.48497 * 109.47501 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.46779 * 300.00076 * 27 25 23 31 31 C 1.53038 * 109.46085 * 119.97637 * 2 1 3 32 32 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46727 * 59.99792 * 1 2 3 34 34 H 1.09005 * 109.46647 * 300.00256 * 1 2 3 35 35 H 1.08996 * 109.49947 * 298.56867 * 4 2 1 36 36 H 1.09001 * 109.49513 * 58.66882 * 4 2 1 37 37 H 1.08999 * 109.58552 * 174.42921 * 5 4 2 38 38 H 1.09007 * 109.58335 * 294.70625 * 5 4 2 39 39 H 1.09001 * 109.43923 * 290.21049 * 11 9 7 40 40 H 1.08996 * 109.43464 * 50.06868 * 11 9 7 41 41 H 1.08996 * 109.53144 * 290.94542 * 12 11 9 42 42 H 1.09005 * 109.76742 * 170.56906 * 12 11 9 43 43 H 1.08003 * 125.72152 * 0.20161 * 14 13 12 44 44 H 1.08002 * 126.10273 * 179.97438 * 16 15 14 45 45 H 1.08993 * 109.74568 * 44.62774 * 18 17 16 46 46 H 1.09000 * 109.74068 * 283.90353 * 18 17 16 47 47 H 1.08998 * 109.47276 * 193.00640 * 21 19 6 48 48 H 1.08996 * 109.47165 * 313.01234 * 21 19 6 49 49 H 0.97004 * 120.00060 * 354.29285 * 22 21 19 50 50 H 0.96993 * 120.00605 * 180.02562 * 26 25 23 51 51 H 1.09007 * 109.49527 * 301.33310 * 31 2 1 52 52 H 1.09002 * 109.49927 * 61.42537 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5713 -0.6889 -1.2642 6 7 4.0678 -1.2490 0.0001 7 6 4.9619 -2.2574 0.0003 8 8 5.4451 -2.6394 1.0451 9 6 5.3614 -2.9104 -1.2979 10 1 4.4948 -2.9716 -1.9561 11 6 5.8921 -4.3193 -1.0191 12 6 6.0693 -5.0760 -2.3400 13 7 6.8434 -4.2401 -3.2606 14 6 7.4927 -4.6080 -4.3784 15 7 8.0588 -3.5498 -4.8983 16 6 7.7879 -2.4789 -4.1323 17 6 7.0303 -2.8896 -3.1079 18 6 6.4598 -2.0778 -1.9734 19 6 3.5714 -0.6885 1.2643 20 1 3.9143 0.3409 1.3672 21 6 4.0911 -1.5249 2.4353 22 7 5.5193 -1.2615 2.6276 23 6 6.1791 -1.8097 3.6949 24 1 5.6466 -2.4367 4.3948 25 6 7.5325 -1.5605 3.8769 26 7 8.1815 -0.7968 3.0237 27 14 8.4327 -2.3090 5.3325 28 1 8.3473 -3.7897 5.2592 29 1 9.8577 -1.8928 5.3005 30 1 7.8084 -1.8391 6.5953 31 6 2.0399 -0.7210 1.2499 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 1.6977 -1.7558 -1.2380 36 1 1.6572 -0.2210 -2.1398 37 1 3.9415 -1.2849 -2.0983 38 1 3.9143 0.3404 -1.3700 39 1 6.8533 -4.2507 -0.5097 40 1 5.1845 -4.8547 -0.3861 41 1 5.0916 -5.2879 -2.7727 42 1 6.6003 -6.0110 -2.1609 43 1 7.5394 -5.6095 -4.7798 44 1 8.1218 -1.4675 -4.3113 45 1 6.0347 -1.1519 -2.3605 46 1 7.2449 -1.8502 -1.2523 47 1 3.5473 -1.2586 3.3416 48 1 3.9426 -2.5831 2.2202 49 1 5.9976 -0.6986 1.9989 50 1 9.1273 -0.6229 3.1506 51 1 1.6572 -0.2210 2.1398 52 1 1.6977 -1.7558 1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565967844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:49 Heat of formation + Delta-G solvation = 69.532986 kcal Electronic energy + Delta-G solvation = -32648.751399 eV Core-core repulsion = 28650.638457 eV Total energy + Delta-G solvation = -3998.112941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.31559 -40.33308 -37.74030 -36.23006 -34.44802 -33.77375 -32.90442 -31.85876 -30.43564 -29.81351 -28.51830 -27.68117 -25.44448 -24.67118 -23.35669 -23.17096 -22.51139 -21.48709 -20.98953 -20.03587 -19.09282 -18.57507 -17.18325 -17.12791 -16.45794 -15.77137 -15.53450 -15.13795 -14.75266 -14.58008 -14.18968 -14.11674 -14.02510 -13.74259 -13.66942 -13.61813 -13.41458 -13.11818 -12.97878 -12.79666 -12.55981 -12.31693 -12.03711 -11.90108 -11.82690 -11.59055 -11.51763 -11.13952 -11.06968 -10.95567 -10.86861 -10.71639 -10.67795 -10.45109 -10.27295 -9.93839 -9.86670 -9.50438 -9.49018 -8.67090 -8.43517 -8.28939 -8.05533 -6.49580 -5.53880 -2.73413 2.08942 2.77822 3.18957 3.23727 3.31301 3.55042 3.58860 3.59821 4.36301 4.53706 4.58349 4.63226 4.67818 4.68927 4.77677 4.81541 4.88928 4.98332 5.08032 5.11774 5.19633 5.25184 5.37859 5.41844 5.44415 5.51849 5.55253 5.64505 5.65731 5.72234 5.72738 5.80204 5.81105 5.86652 5.88888 6.01814 6.02964 6.07616 6.09068 6.13413 6.22399 6.37179 6.40512 6.53916 6.66365 6.77821 6.89943 7.22672 7.23308 7.86496 7.91302 8.08706 8.64325 8.89951 9.76029 10.37010 10.71664 11.70085 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006876 B = 0.005001 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4071.241427 B = 5597.027950 C = 8814.094171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.128 4.128 5 C 0.108 3.892 6 N -0.613 5.613 7 C 0.477 3.523 8 O -0.435 6.435 9 C -0.105 4.105 10 H 0.085 0.915 11 C -0.115 4.115 12 C 0.105 3.895 13 N -0.455 5.455 14 C 0.176 3.824 15 N -0.499 5.499 16 C -0.029 4.029 17 C -0.010 4.010 18 C -0.037 4.037 19 C 0.142 3.858 20 H 0.069 0.931 21 C 0.164 3.836 22 N -0.694 5.694 23 C -0.208 4.208 24 H 0.062 0.938 25 C -0.020 4.020 26 N -0.938 5.938 27 Si 0.899 3.101 28 H -0.291 1.291 29 H -0.294 1.294 30 H -0.290 1.290 31 C -0.120 4.120 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.202 0.798 44 H 0.168 0.832 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.016 0.984 48 H 0.031 0.969 49 H 0.380 0.620 50 H 0.250 0.750 51 H 0.072 0.928 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.110 -3.207 -14.943 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.016 4.016 6 N -0.351 5.351 7 C 0.262 3.738 8 O -0.302 6.302 9 C -0.127 4.127 10 H 0.103 0.897 11 C -0.153 4.153 12 C -0.017 4.017 13 N -0.139 5.139 14 C -0.106 4.106 15 N -0.217 5.217 16 C -0.176 4.176 17 C -0.125 4.125 18 C -0.075 4.075 19 C 0.039 3.961 20 H 0.086 0.914 21 C 0.037 3.963 22 N -0.337 5.337 23 C -0.340 4.340 24 H 0.080 0.920 25 C -0.214 4.214 26 N -0.589 5.589 27 Si 0.732 3.268 28 H -0.218 1.218 29 H -0.220 1.220 30 H -0.217 1.217 31 C -0.159 4.159 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.218 0.782 44 H 0.185 0.815 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.033 0.967 48 H 0.048 0.952 49 H 0.214 0.786 50 H 0.060 0.940 51 H 0.091 0.909 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.372 -3.656 -14.806 20.283 hybrid contribution 0.222 -0.326 1.115 1.183 sum -13.149 -3.983 -13.691 19.396 Atomic orbital electron populations 1.21816 0.95312 1.01630 1.01477 1.21110 0.95340 0.99679 0.94917 0.91073 1.21982 0.95590 1.01115 0.97980 1.21667 0.93820 0.99269 0.86814 1.47908 1.44864 1.36394 1.05926 1.20288 0.80355 0.82330 0.90864 1.91280 1.49350 1.59554 1.30000 1.21392 0.98812 0.95825 0.96638 0.89702 1.21684 1.04556 0.94144 0.94892 1.22045 0.95854 0.94086 0.89707 1.45456 1.39523 1.08040 1.20878 1.24712 0.98104 1.00285 0.87488 1.70465 1.23194 0.98328 1.29717 1.21806 1.03030 0.98662 0.94079 1.21155 1.06064 0.84089 1.01192 1.20210 0.97657 0.96195 0.93460 1.21473 0.92252 0.98121 0.84268 0.91350 1.20785 0.87297 0.96495 0.91769 1.42173 1.03321 1.58346 1.29822 1.19081 0.91720 1.22365 1.00856 0.91986 1.24568 0.96554 1.01440 0.98879 1.69633 1.08696 1.42829 1.37725 0.86368 0.78999 0.78731 0.82743 1.21782 1.22005 1.21709 1.21971 0.95349 1.01004 0.97608 0.92860 0.92925 0.92668 0.91737 0.91256 0.90131 0.91747 0.89324 0.89063 0.89918 0.88851 0.78174 0.81451 0.89358 0.88550 0.96677 0.95151 0.78587 0.94046 0.90933 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 37.16 0.34 -0.84 16 2 C -0.09 -0.88 2.68 -90.58 -0.24 -1.13 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.13 -1.14 5.36 -26.61 -0.14 -1.28 16 5 C 0.11 1.12 5.88 -3.71 -0.02 1.10 16 6 N -0.61 -8.77 2.97 -165.22 -0.49 -9.26 16 7 C 0.48 7.89 6.40 -10.98 -0.07 7.82 16 8 O -0.43 -9.55 9.94 5.56 0.06 -9.49 16 9 C -0.10 -1.33 1.67 -91.46 -0.15 -1.49 16 10 H 0.08 0.91 6.63 -51.93 -0.34 0.56 16 11 C -0.11 -1.43 4.59 -26.54 -0.12 -1.55 16 12 C 0.11 0.99 7.00 -3.92 -0.03 0.97 16 13 N -0.45 -5.41 3.13 -114.10 -0.36 -5.77 16 14 C 0.18 2.10 12.66 -90.72 -1.15 0.95 16 15 N -0.50 -7.32 11.27 -14.87 -0.17 -7.48 16 16 C -0.03 -0.40 11.84 -17.95 -0.21 -0.62 16 17 C -0.01 -0.14 6.57 -81.73 -0.54 -0.68 16 18 C -0.04 -0.48 5.40 -27.62 -0.15 -0.63 16 19 C 0.14 2.24 2.91 -67.60 -0.20 2.05 16 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 21 C 0.16 3.39 4.89 -4.04 -0.02 3.37 16 22 N -0.69 -17.96 3.18 -59.91 -0.19 -18.15 16 23 C -0.21 -6.05 9.74 -15.06 -0.15 -6.20 16 24 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 25 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 26 N -0.94 -29.37 13.06 55.49 0.72 -28.65 16 27 Si 0.90 23.52 29.55 -169.99 -5.02 18.50 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 30 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 31 C -0.12 -1.46 4.62 -26.61 -0.12 -1.58 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.74 4.86 -51.93 -0.25 0.49 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 40 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.20 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 45 H 0.09 1.00 7.09 -51.93 -0.37 0.63 16 46 H 0.10 1.58 8.11 -51.93 -0.42 1.16 16 47 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 48 H 0.03 0.68 6.40 -51.93 -0.33 0.35 16 49 H 0.38 10.53 7.17 -40.82 -0.29 10.23 16 50 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -35.74 395.89 -11.29 -47.03 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -8.74 Total: 7.72 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.07 Total: -0.42 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.48 Total: -69.31 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.06 Total: -9.49 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.74 -11.29 -47.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565967844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.561 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds