Wall clock time and date at job start Wed Apr 1 2020 04:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46299 * 2 1 4 4 C 1.53041 * 109.45715 * 240.02287 * 2 1 3 5 5 C 1.53196 * 109.31301 * 178.61751 * 4 2 1 6 6 N 1.46922 * 108.77471 * 54.63369 * 5 4 2 7 7 C 1.34780 * 120.62872 * 126.41351 * 6 5 4 8 8 O 1.21280 * 120.00114 * 174.08899 * 7 6 5 9 9 C 1.50704 * 119.99722 * 354.09163 * 7 6 5 10 10 H 1.08993 * 109.49708 * 323.04709 * 9 7 6 11 11 C 1.53112 * 109.49495 * 202.97800 * 9 7 6 12 12 C 1.53262 * 109.72445 * 170.18624 * 11 9 7 13 13 N 1.46470 * 108.72243 * 50.69063 * 12 11 9 14 14 C 1.34403 * 128.44507 * 162.71196 * 13 12 11 15 15 N 1.30781 * 108.55729 * 180.21918 * 14 13 12 16 16 C 1.34426 * 109.31901 * 359.93152 * 15 14 13 17 17 C 1.33863 * 107.79829 * 359.97438 * 16 15 14 18 18 C 1.50715 * 128.68069 * 180.12761 * 17 16 15 19 19 C 1.46921 * 118.74208 * 306.39287 * 6 5 4 20 20 H 1.08992 * 109.58861 * 293.82257 * 19 6 5 21 21 C 1.53004 * 109.58759 * 173.39241 * 19 6 5 22 22 N 1.46497 * 109.46890 * 73.00819 * 21 19 6 23 23 C 1.36933 * 120.00271 * 174.29137 * 22 21 19 24 24 H 1.08004 * 119.99700 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00420 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00099 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00351 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47393 * 59.99884 * 27 25 23 29 29 H 1.48497 * 109.47501 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.46779 * 300.00076 * 27 25 23 31 31 C 1.53038 * 109.46085 * 119.97637 * 2 1 3 32 32 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46727 * 59.99792 * 1 2 3 34 34 H 1.09005 * 109.46647 * 300.00256 * 1 2 3 35 35 H 1.08996 * 109.49947 * 298.56867 * 4 2 1 36 36 H 1.09001 * 109.49513 * 58.66882 * 4 2 1 37 37 H 1.08999 * 109.58552 * 174.42921 * 5 4 2 38 38 H 1.09007 * 109.58335 * 294.70625 * 5 4 2 39 39 H 1.09001 * 109.43923 * 290.21049 * 11 9 7 40 40 H 1.08996 * 109.43464 * 50.06868 * 11 9 7 41 41 H 1.08996 * 109.53144 * 290.94542 * 12 11 9 42 42 H 1.09005 * 109.76742 * 170.56906 * 12 11 9 43 43 H 1.08003 * 125.72152 * 0.20161 * 14 13 12 44 44 H 1.08002 * 126.10273 * 179.97438 * 16 15 14 45 45 H 1.08993 * 109.74568 * 44.62774 * 18 17 16 46 46 H 1.09000 * 109.74068 * 283.90353 * 18 17 16 47 47 H 1.08998 * 109.47276 * 193.00640 * 21 19 6 48 48 H 1.08996 * 109.47165 * 313.01234 * 21 19 6 49 49 H 0.97004 * 120.00060 * 354.29285 * 22 21 19 50 50 H 0.96993 * 120.00605 * 180.02562 * 26 25 23 51 51 H 1.09007 * 109.49527 * 301.33310 * 31 2 1 52 52 H 1.09002 * 109.49927 * 61.42537 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5713 -0.6889 -1.2642 6 7 4.0678 -1.2490 0.0001 7 6 4.9619 -2.2574 0.0003 8 8 5.4451 -2.6394 1.0451 9 6 5.3614 -2.9104 -1.2979 10 1 4.4948 -2.9716 -1.9561 11 6 5.8921 -4.3193 -1.0191 12 6 6.0693 -5.0760 -2.3400 13 7 6.8434 -4.2401 -3.2606 14 6 7.4927 -4.6080 -4.3784 15 7 8.0588 -3.5498 -4.8983 16 6 7.7879 -2.4789 -4.1323 17 6 7.0303 -2.8896 -3.1079 18 6 6.4598 -2.0778 -1.9734 19 6 3.5714 -0.6885 1.2643 20 1 3.9143 0.3409 1.3672 21 6 4.0911 -1.5249 2.4353 22 7 5.5193 -1.2615 2.6276 23 6 6.1791 -1.8097 3.6949 24 1 5.6466 -2.4367 4.3948 25 6 7.5325 -1.5605 3.8769 26 7 8.1815 -0.7968 3.0237 27 14 8.4327 -2.3090 5.3325 28 1 8.3473 -3.7897 5.2592 29 1 9.8577 -1.8928 5.3005 30 1 7.8084 -1.8391 6.5953 31 6 2.0399 -0.7210 1.2499 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 1.6977 -1.7558 -1.2380 36 1 1.6572 -0.2210 -2.1398 37 1 3.9415 -1.2849 -2.0983 38 1 3.9143 0.3404 -1.3700 39 1 6.8533 -4.2507 -0.5097 40 1 5.1845 -4.8547 -0.3861 41 1 5.0916 -5.2879 -2.7727 42 1 6.6003 -6.0110 -2.1609 43 1 7.5394 -5.6095 -4.7798 44 1 8.1218 -1.4675 -4.3113 45 1 6.0347 -1.1519 -2.3605 46 1 7.2449 -1.8502 -1.2523 47 1 3.5473 -1.2586 3.3416 48 1 3.9426 -2.5831 2.2202 49 1 5.9976 -0.6986 1.9989 50 1 9.1273 -0.6229 3.1506 51 1 1.6572 -0.2210 2.1398 52 1 1.6977 -1.7558 1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565967844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:47 Heat of formation + Delta-G solvation = 48.350124 kcal Electronic energy + Delta-G solvation = -32649.669956 eV Core-core repulsion = 28650.638457 eV Total energy + Delta-G solvation = -3999.031499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.28820 -41.56494 -38.80487 -37.41653 -36.15830 -34.84460 -34.18384 -33.36192 -31.51664 -31.44807 -29.48246 -28.63927 -27.12958 -25.72465 -24.59436 -24.19129 -24.05404 -22.50146 -22.22163 -20.98499 -20.12983 -19.78518 -19.06639 -18.08050 -17.77646 -16.90371 -16.71184 -16.59679 -16.15945 -15.63167 -15.46018 -15.17230 -15.12198 -15.03731 -14.82152 -14.69598 -14.58385 -14.51420 -14.08414 -14.03572 -13.75643 -13.72308 -13.14307 -12.98763 -12.90997 -12.77895 -12.72853 -12.62147 -12.47649 -12.19356 -12.17806 -12.03588 -11.98164 -11.83572 -11.65842 -11.28189 -11.15790 -10.96906 -10.81661 -10.43348 -9.86482 -9.36827 -9.30389 -8.60954 -7.82736 -5.00248 1.12085 1.42071 1.45757 1.51362 1.89593 1.94434 2.14329 2.20183 2.61469 3.36035 3.49891 3.56367 3.59883 3.75250 3.77581 3.82181 3.90276 3.97891 4.07798 4.12176 4.17434 4.27242 4.34812 4.37005 4.45853 4.49047 4.53186 4.58879 4.65986 4.69157 4.75245 4.81719 4.83022 4.87025 4.92056 4.96668 5.00432 5.06007 5.13499 5.15518 5.16515 5.26390 5.34705 5.41660 5.44537 5.52379 5.59425 5.76641 5.87492 6.34698 6.37834 6.69956 7.11535 7.44679 7.61811 8.27110 8.49485 9.41811 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006876 B = 0.005001 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4071.241427 B = 5597.027950 C = 8814.094171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.121 4.121 5 C 0.101 3.899 6 N -0.610 5.610 7 C 0.476 3.524 8 O -0.502 6.502 9 C -0.092 4.092 10 H 0.120 0.880 11 C -0.112 4.112 12 C 0.111 3.889 13 N -0.456 5.456 14 C 0.187 3.813 15 N -0.536 5.536 16 C -0.044 4.044 17 C -0.023 4.023 18 C -0.026 4.026 19 C 0.148 3.852 20 H 0.054 0.946 21 C 0.167 3.833 22 N -0.699 5.699 23 C -0.208 4.208 24 H 0.060 0.940 25 C -0.083 4.083 26 N -0.973 5.973 27 Si 0.962 3.038 28 H -0.288 1.288 29 H -0.298 1.298 30 H -0.278 1.278 31 C -0.110 4.110 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.241 0.759 44 H 0.174 0.826 45 H 0.107 0.893 46 H 0.052 0.948 47 H 0.012 0.988 48 H 0.018 0.982 49 H 0.367 0.633 50 H 0.243 0.757 51 H 0.074 0.926 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.713 -4.184 -17.119 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.159 4.159 5 C -0.021 4.021 6 N -0.346 5.346 7 C 0.262 3.738 8 O -0.374 6.374 9 C -0.114 4.114 10 H 0.138 0.862 11 C -0.150 4.150 12 C -0.010 4.010 13 N -0.140 5.140 14 C -0.095 4.095 15 N -0.255 5.255 16 C -0.190 4.190 17 C -0.138 4.138 18 C -0.065 4.065 19 C 0.044 3.956 20 H 0.072 0.928 21 C 0.041 3.959 22 N -0.340 5.340 23 C -0.341 4.341 24 H 0.078 0.922 25 C -0.274 4.274 26 N -0.626 5.626 27 Si 0.793 3.207 28 H -0.215 1.215 29 H -0.224 1.224 30 H -0.205 1.205 31 C -0.149 4.149 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.257 0.743 44 H 0.191 0.809 45 H 0.125 0.875 46 H 0.070 0.930 47 H 0.029 0.971 48 H 0.035 0.965 49 H 0.199 0.801 50 H 0.051 0.949 51 H 0.093 0.907 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.060 -4.623 -16.998 23.838 hybrid contribution 0.965 -0.050 1.753 2.002 sum -15.095 -4.673 -15.245 21.957 Atomic orbital electron populations 1.21764 0.93652 1.02032 1.02279 1.21097 0.96607 0.99270 0.93758 0.91112 1.21960 0.93741 1.01582 0.98611 1.21990 0.95377 0.99644 0.85063 1.48042 1.43991 1.35556 1.06992 1.20981 0.79485 0.81857 0.91443 1.91244 1.51607 1.61981 1.32555 1.21334 0.99738 0.95423 0.94875 0.86215 1.21593 1.02138 0.94636 0.96631 1.22200 0.97700 0.93597 0.87469 1.45627 1.39559 1.07584 1.21187 1.25490 0.96099 1.01164 0.86720 1.70460 1.24813 0.99241 1.30970 1.22045 1.03261 0.99264 0.94475 1.21062 1.06769 0.85036 1.00957 1.20024 0.96524 0.97301 0.92610 1.21282 0.94807 0.96097 0.83398 0.92751 1.20825 0.84667 0.96605 0.93816 1.42254 1.05176 1.57830 1.28729 1.19423 0.92180 1.21265 1.01222 0.92177 1.25294 0.97438 1.02838 1.01828 1.69805 1.08344 1.44784 1.39689 0.85355 0.77413 0.77845 0.80108 1.21482 1.22403 1.20466 1.21896 0.91943 1.01516 0.99564 0.92642 0.91325 0.92756 0.91432 0.88397 0.88302 0.91191 0.93759 0.88961 0.86375 0.86721 0.74272 0.80884 0.87470 0.92964 0.97062 0.96483 0.80081 0.94850 0.90704 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.09 -1.45 2.68 -10.77 -0.03 -1.48 16 3 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 4 C -0.12 -1.68 5.36 30.67 0.16 -1.51 16 5 C 0.10 1.84 5.88 86.36 0.51 2.35 16 6 N -0.61 -17.20 2.97 -795.02 -2.36 -19.57 16 7 C 0.48 16.08 6.40 87.66 0.56 16.64 16 8 O -0.50 -23.31 9.94 -3.03 -0.03 -23.34 16 9 C -0.09 -2.29 1.67 -11.34 -0.02 -2.30 16 10 H 0.12 2.16 6.63 -2.39 -0.02 2.14 16 11 C -0.11 -2.77 4.59 30.72 0.14 -2.63 16 12 C 0.11 1.79 7.00 86.47 0.61 2.39 16 13 N -0.46 -9.85 3.13 -514.89 -1.61 -11.46 16 14 C 0.19 3.97 12.66 180.38 2.28 6.26 16 15 N -0.54 -15.02 11.27 -200.97 -2.26 -17.29 16 16 C -0.04 -1.21 11.84 83.30 0.99 -0.23 16 17 C -0.02 -0.60 6.57 40.73 0.27 -0.34 16 18 C -0.03 -0.69 5.40 30.02 0.16 -0.53 16 19 C 0.15 4.72 2.91 44.98 0.13 4.85 16 20 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 21 C 0.17 7.21 4.89 86.38 0.42 7.63 16 22 N -0.70 -38.05 3.18 -343.46 -1.09 -39.14 16 23 C -0.21 -12.57 9.74 84.03 0.82 -11.75 16 24 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 25 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 26 N -0.97 -63.66 13.06 21.65 0.28 -63.38 16 27 Si 0.96 49.97 29.55 68.60 2.03 51.99 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 29 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 30 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 31 C -0.11 -2.53 4.62 30.67 0.14 -2.39 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.46 4.86 -2.39 -0.01 1.45 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.04 1.49 8.11 -2.39 -0.02 1.47 16 40 H 0.09 2.25 8.11 -2.39 -0.02 2.23 16 41 H 0.12 1.17 8.14 -2.39 -0.02 1.16 16 42 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.24 2.81 8.06 -2.91 -0.02 2.78 16 44 H 0.17 4.27 8.06 -2.91 -0.02 4.25 16 45 H 0.11 2.35 7.09 -2.39 -0.02 2.33 16 46 H 0.05 1.86 8.11 -2.39 -0.02 1.84 16 47 H 0.01 0.50 8.09 -2.39 -0.02 0.48 16 48 H 0.02 0.81 6.40 -2.39 -0.02 0.79 16 49 H 0.37 21.54 7.17 -92.71 -0.66 20.88 16 50 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 51 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 52 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -83.48 395.89 3.47 -80.01 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.25 Total: 31.01 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 8.27 Total: 11.16 kcal Atomic # 7 Polarization: -143.79 SS G_CDS: -7.05 Total: -150.84 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.03 Total: -23.34 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.03 Total: 51.99 kcal Total: -83.48 3.47 -80.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565967844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.361 kcal (2) G-P(sol) polarization free energy of solvation -83.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds