Wall clock time and date at job start Wed Apr 1 2020 04:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46426 * 2 1 4 4 C 1.53042 * 109.46236 * 240.03127 * 2 1 3 5 5 C 1.53188 * 109.31636 * 178.61697 * 4 2 1 6 6 N 1.46927 * 108.77707 * 54.63459 * 5 4 2 7 7 C 1.34770 * 120.63423 * 126.36979 * 6 5 4 8 8 O 1.21565 * 120.00423 * 186.78389 * 7 6 5 9 9 C 1.47714 * 119.99894 * 6.78020 * 7 6 5 10 10 C 1.41638 * 126.50218 * 186.91768 * 9 7 6 11 11 C 1.34631 * 105.36307 * 180.02562 * 10 9 7 12 12 N 1.35575 * 107.70937 * 359.97438 * 11 10 9 13 13 N 1.28423 * 109.70170 * 359.97438 * 12 11 10 14 14 C 1.46995 * 123.92082 * 179.97438 * 12 11 10 15 15 C 1.53144 * 108.88987 * 342.37888 * 14 12 11 16 16 C 1.53155 * 109.60138 * 51.11643 * 15 14 12 17 17 C 1.50791 * 127.59026 * 180.09261 * 11 10 9 18 18 C 1.46932 * 118.73479 * 306.64540 * 6 5 4 19 19 H 1.09004 * 109.58404 * 293.56477 * 18 6 5 20 20 C 1.53003 * 109.58245 * 173.14227 * 18 6 5 21 21 N 1.46501 * 109.47140 * 68.55329 * 20 18 6 22 22 C 1.36930 * 120.00091 * 174.65483 * 21 20 18 23 23 H 1.08000 * 120.00056 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00121 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00248 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00174 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46901 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47421 * 120.00040 * 26 24 22 29 29 H 1.48503 * 109.46703 * 240.00337 * 26 24 22 30 30 C 1.52755 * 109.01080 * 53.30837 * 18 6 5 31 31 H 1.09000 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46752 * 299.97393 * 1 2 3 33 33 H 1.09003 * 109.46919 * 59.96873 * 1 2 3 34 34 H 1.08999 * 109.49862 * 58.66273 * 4 2 1 35 35 H 1.08999 * 109.52487 * 298.58583 * 4 2 1 36 36 H 1.08998 * 109.58414 * 294.84930 * 5 4 2 37 37 H 1.09003 * 109.70442 * 174.49247 * 5 4 2 38 38 H 1.08004 * 127.32684 * 0.08426 * 10 9 7 39 39 H 1.08998 * 109.57060 * 222.55529 * 14 12 11 40 40 H 1.09007 * 109.66580 * 102.26021 * 14 12 11 41 41 H 1.09001 * 109.45041 * 291.08032 * 15 14 12 42 42 H 1.09004 * 109.44996 * 171.15611 * 15 14 12 43 43 H 1.09000 * 109.54216 * 170.53783 * 16 15 14 44 44 H 1.08997 * 109.54151 * 50.28017 * 16 15 14 45 45 H 1.08996 * 109.71843 * 44.72380 * 17 11 10 46 46 H 1.09001 * 109.71928 * 284.11578 * 17 11 10 47 47 H 1.09002 * 109.46949 * 188.54866 * 20 18 6 48 48 H 1.08992 * 109.47123 * 308.55167 * 20 18 6 49 49 H 0.97005 * 119.99817 * 354.65983 * 21 20 18 50 50 H 0.96999 * 120.00176 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.56784 * 185.54958 * 30 18 6 52 52 H 1.09004 * 109.38497 * 65.51330 * 30 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0679 -1.2489 0.0001 7 6 4.9614 -2.2579 0.0002 8 8 5.2714 -2.7952 1.0456 9 6 5.5639 -2.7109 -1.2701 10 6 6.4047 -3.8366 -1.4496 11 6 6.7054 -3.8516 -2.7618 12 7 6.0812 -2.7960 -3.3400 13 7 5.4203 -2.1445 -2.4524 14 6 6.1693 -2.4746 -4.7717 15 6 7.3724 -3.2082 -5.3714 16 6 7.3066 -4.6925 -4.9997 17 6 7.5715 -4.8440 -3.4957 18 6 3.5671 -0.6923 1.2643 19 1 3.9098 0.3369 1.3715 20 6 4.0830 -1.5323 2.4345 21 7 5.5308 -1.3506 2.5652 22 6 6.2002 -1.9199 3.6153 23 1 5.6610 -2.5033 4.3469 24 6 7.5721 -1.7482 3.7388 25 7 8.2295 -1.0377 2.8469 26 14 8.4855 -2.5255 5.1710 27 1 7.5249 -3.2673 6.0266 28 1 9.5135 -3.4632 4.6522 29 1 9.1441 -1.4633 5.9731 30 6 2.0399 -0.7207 1.2501 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8897 34 1 1.6573 -0.2208 -2.1398 35 1 1.6978 -1.7557 -1.2389 36 1 3.9143 0.3408 -1.3673 37 1 3.9438 -1.2832 -2.0985 38 1 6.7339 -4.5351 -0.6945 39 1 6.2976 -1.3995 -4.8973 40 1 5.2577 -2.7948 -5.2763 41 1 8.2932 -2.7764 -4.9794 42 1 7.3566 -3.1048 -6.4564 43 1 8.0625 -5.2426 -5.5602 44 1 6.3177 -5.0844 -5.2374 45 1 7.3201 -5.8563 -3.1793 46 1 8.6217 -4.6428 -3.2841 47 1 3.5924 -1.2139 3.3543 48 1 3.8639 -2.5841 2.2510 49 1 6.0151 -0.8269 1.9078 50 1 9.1881 -0.9174 2.9335 51 1 1.6572 -0.2206 2.1399 52 1 1.6973 -1.7554 1.2387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656550437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:40 Heat of formation + Delta-G solvation = 94.001992 kcal Electronic energy + Delta-G solvation = -32376.046887 eV Core-core repulsion = 28378.995002 eV Total energy + Delta-G solvation = -3997.051886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.55074 -39.81770 -37.17014 -36.65600 -34.33097 -33.45832 -32.97594 -31.93987 -30.09557 -29.66356 -28.59918 -28.03457 -25.35752 -24.71476 -23.47703 -22.74566 -22.45128 -22.08112 -20.77274 -19.93145 -19.52237 -18.24680 -16.84728 -16.79645 -16.29298 -15.87241 -15.31501 -14.83827 -14.69788 -14.44240 -14.38872 -14.25091 -13.99961 -13.78805 -13.61313 -13.40375 -13.20553 -12.98623 -12.75396 -12.64149 -12.60506 -12.06282 -11.93973 -11.80976 -11.57218 -11.42695 -11.41328 -11.34063 -11.21007 -10.94645 -10.74946 -10.68740 -10.63963 -10.51878 -10.13554 -9.76299 -9.62651 -9.40373 -8.78750 -8.64138 -8.57515 -8.28025 -7.85811 -6.39257 -5.45312 -2.64556 1.99162 2.51910 2.55981 3.60139 3.62923 3.65480 3.68146 4.12156 4.19592 4.34526 4.42678 4.56520 4.81095 4.87336 4.91835 4.93287 4.99533 5.05180 5.10241 5.21890 5.32229 5.38034 5.43780 5.49555 5.54617 5.59151 5.66663 5.72423 5.74466 5.75816 5.84608 5.85359 5.89541 5.92544 6.00405 6.11016 6.15467 6.22983 6.24780 6.27408 6.30526 6.33969 6.55624 6.68533 6.75643 6.88862 7.01248 7.17805 7.49100 7.97111 8.12416 8.30930 8.72508 9.14480 9.83657 10.44826 10.79154 11.78749 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007233 B = 0.004774 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3870.404970 B = 5863.164216 C = 9215.896597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.125 4.125 5 C 0.091 3.909 6 N -0.604 5.604 7 C 0.558 3.442 8 O -0.437 6.437 9 C 0.014 3.986 10 C -0.172 4.172 11 C 0.008 3.992 12 N -0.295 5.295 13 N -0.273 5.273 14 C 0.124 3.876 15 C -0.136 4.136 16 C -0.125 4.125 17 C -0.051 4.051 18 C 0.143 3.857 19 H 0.067 0.933 20 C 0.159 3.841 21 N -0.696 5.696 22 C -0.204 4.204 23 H 0.066 0.934 24 C -0.022 4.022 25 N -0.938 5.938 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.296 1.296 29 H -0.296 1.296 30 C -0.120 4.120 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.123 0.877 38 H 0.159 0.841 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.042 0.958 49 H 0.380 0.620 50 H 0.248 0.752 51 H 0.071 0.929 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 -2.796 -21.362 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.164 4.164 5 C -0.033 4.033 6 N -0.342 5.342 7 C 0.341 3.659 8 O -0.303 6.303 9 C -0.147 4.147 10 C -0.200 4.200 11 C -0.115 4.115 12 N -0.083 5.083 13 N -0.107 5.107 14 C 0.004 3.996 15 C -0.175 4.175 16 C -0.163 4.163 17 C -0.090 4.090 18 C 0.040 3.960 19 H 0.085 0.915 20 C 0.032 3.968 21 N -0.339 5.339 22 C -0.336 4.336 23 H 0.084 0.916 24 C -0.217 4.217 25 N -0.589 5.589 26 Si 0.733 3.267 27 H -0.208 1.208 28 H -0.223 1.223 29 H -0.224 1.224 30 C -0.159 4.159 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.177 0.823 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.032 0.968 48 H 0.060 0.940 49 H 0.213 0.787 50 H 0.058 0.942 51 H 0.090 0.910 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.115 -2.297 -21.247 23.643 hybrid contribution 1.166 -0.654 0.791 1.553 sum -8.948 -2.951 -20.456 22.522 Atomic orbital electron populations 1.21814 0.95502 1.01555 1.01267 1.21132 0.95141 0.99620 0.95242 0.91253 1.21968 0.96309 1.00699 0.97415 1.22263 0.92878 0.99899 0.88252 1.47588 1.44266 1.36070 1.06254 1.17037 0.80332 0.82401 0.86103 1.91191 1.58459 1.52532 1.28086 1.22383 1.03050 0.97213 0.92021 1.21302 1.02859 1.01103 0.94752 1.21136 1.02690 0.94184 0.93522 1.45777 1.35004 1.19552 1.07989 1.73201 1.17407 1.21760 0.98363 1.21997 1.00212 1.02101 0.75296 1.21925 0.97865 0.96098 1.01582 1.21677 1.02894 0.95780 0.95912 1.20311 0.98413 0.97008 0.93240 1.21386 0.92462 0.97908 0.84232 0.91513 1.20931 0.86821 0.97227 0.91853 1.42297 1.01342 1.60625 1.29604 1.19214 0.90323 1.23460 1.00625 0.91635 1.24601 0.96387 1.01848 0.98830 1.69682 1.07129 1.45581 1.36489 0.86178 0.79920 0.78425 0.82199 1.20827 1.22333 1.22428 1.21885 0.95387 1.01103 0.97515 0.92886 0.92787 0.93055 0.91635 0.92027 0.92780 0.85973 0.82313 0.88548 0.89462 0.90358 0.89080 0.90338 0.91247 0.89289 0.89620 0.96782 0.94024 0.78665 0.94208 0.90999 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 2 C -0.09 -1.12 2.68 -90.58 -0.24 -1.36 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.54 5.36 -26.61 -0.14 -1.68 16 5 C 0.09 1.36 6.12 -3.71 -0.02 1.34 16 6 N -0.60 -11.25 2.98 -166.63 -0.50 -11.74 16 7 C 0.56 12.12 7.02 -12.39 -0.09 12.03 16 8 O -0.44 -11.30 10.71 5.31 0.06 -11.24 16 9 C 0.01 0.27 6.83 -82.68 -0.56 -0.29 16 10 C -0.17 -3.08 10.75 -39.56 -0.43 -3.51 16 11 C 0.01 0.12 6.57 -82.17 -0.54 -0.42 16 12 N -0.29 -3.97 3.74 -56.71 -0.21 -4.18 16 13 N -0.27 -4.48 8.51 33.46 0.28 -4.19 16 14 C 0.12 1.04 7.17 -3.70 -0.03 1.01 16 15 C -0.14 -0.85 5.91 -26.58 -0.16 -1.01 16 16 C -0.12 -0.82 5.98 -26.41 -0.16 -0.98 16 17 C -0.05 -0.49 6.28 -27.60 -0.17 -0.66 16 18 C 0.14 2.66 2.92 -67.82 -0.20 2.47 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.16 3.65 4.86 -4.04 -0.02 3.63 16 21 N -0.70 -19.51 3.21 -59.91 -0.19 -19.70 16 22 C -0.20 -6.25 9.71 -15.06 -0.15 -6.39 16 23 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 24 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 25 N -0.94 -30.71 13.06 55.49 0.72 -29.98 16 26 Si 0.90 24.27 29.55 -169.99 -5.02 19.24 16 27 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 29 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 30 C -0.12 -1.73 4.62 -26.83 -0.12 -1.86 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.12 1.87 4.16 -71.54 -0.30 1.57 16 38 H 0.16 2.89 8.06 -52.48 -0.42 2.47 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.57 8.11 -51.93 -0.42 0.14 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.01 0.33 8.13 -51.93 -0.42 -0.10 16 48 H 0.04 1.03 6.35 -51.93 -0.33 0.70 16 49 H 0.38 11.42 6.98 -40.82 -0.29 11.14 16 50 H 0.25 7.85 8.31 -40.82 -0.34 7.51 16 51 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -37.30 396.90 -10.57 -47.87 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.91 Total: 7.52 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -2.78 Total: 0.42 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: 0.11 Total: -69.80 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.06 Total: -11.24 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.02 Total: 19.24 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.30 -10.57 -47.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656550437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.874 kcal (2) G-P(sol) polarization free energy of solvation -37.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds