Wall clock time and date at job start Wed Apr 1 2020 04:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46426 * 2 1 4 4 C 1.53042 * 109.46236 * 240.03127 * 2 1 3 5 5 C 1.53188 * 109.31636 * 178.61697 * 4 2 1 6 6 N 1.46927 * 108.77707 * 54.63459 * 5 4 2 7 7 C 1.34770 * 120.63423 * 126.36979 * 6 5 4 8 8 O 1.21565 * 120.00423 * 186.78389 * 7 6 5 9 9 C 1.47714 * 119.99894 * 6.78020 * 7 6 5 10 10 C 1.41638 * 126.50218 * 186.91768 * 9 7 6 11 11 C 1.34631 * 105.36307 * 180.02562 * 10 9 7 12 12 N 1.35575 * 107.70937 * 359.97438 * 11 10 9 13 13 N 1.28423 * 109.70170 * 359.97438 * 12 11 10 14 14 C 1.46995 * 123.92082 * 179.97438 * 12 11 10 15 15 C 1.53144 * 108.88987 * 342.37888 * 14 12 11 16 16 C 1.53155 * 109.60138 * 51.11643 * 15 14 12 17 17 C 1.50791 * 127.59026 * 180.09261 * 11 10 9 18 18 C 1.46932 * 118.73479 * 306.64540 * 6 5 4 19 19 H 1.09004 * 109.58404 * 293.56477 * 18 6 5 20 20 C 1.53003 * 109.58245 * 173.14227 * 18 6 5 21 21 N 1.46501 * 109.47140 * 68.55329 * 20 18 6 22 22 C 1.36930 * 120.00091 * 174.65483 * 21 20 18 23 23 H 1.08000 * 120.00056 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00121 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00248 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00174 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46901 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47421 * 120.00040 * 26 24 22 29 29 H 1.48503 * 109.46703 * 240.00337 * 26 24 22 30 30 C 1.52755 * 109.01080 * 53.30837 * 18 6 5 31 31 H 1.09000 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46752 * 299.97393 * 1 2 3 33 33 H 1.09003 * 109.46919 * 59.96873 * 1 2 3 34 34 H 1.08999 * 109.49862 * 58.66273 * 4 2 1 35 35 H 1.08999 * 109.52487 * 298.58583 * 4 2 1 36 36 H 1.08998 * 109.58414 * 294.84930 * 5 4 2 37 37 H 1.09003 * 109.70442 * 174.49247 * 5 4 2 38 38 H 1.08004 * 127.32684 * 0.08426 * 10 9 7 39 39 H 1.08998 * 109.57060 * 222.55529 * 14 12 11 40 40 H 1.09007 * 109.66580 * 102.26021 * 14 12 11 41 41 H 1.09001 * 109.45041 * 291.08032 * 15 14 12 42 42 H 1.09004 * 109.44996 * 171.15611 * 15 14 12 43 43 H 1.09000 * 109.54216 * 170.53783 * 16 15 14 44 44 H 1.08997 * 109.54151 * 50.28017 * 16 15 14 45 45 H 1.08996 * 109.71843 * 44.72380 * 17 11 10 46 46 H 1.09001 * 109.71928 * 284.11578 * 17 11 10 47 47 H 1.09002 * 109.46949 * 188.54866 * 20 18 6 48 48 H 1.08992 * 109.47123 * 308.55167 * 20 18 6 49 49 H 0.97005 * 119.99817 * 354.65983 * 21 20 18 50 50 H 0.96999 * 120.00176 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.56784 * 185.54958 * 30 18 6 52 52 H 1.09004 * 109.38497 * 65.51330 * 30 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2642 6 7 4.0679 -1.2489 0.0001 7 6 4.9614 -2.2579 0.0002 8 8 5.2714 -2.7952 1.0456 9 6 5.5639 -2.7109 -1.2701 10 6 6.4047 -3.8366 -1.4496 11 6 6.7054 -3.8516 -2.7618 12 7 6.0812 -2.7960 -3.3400 13 7 5.4203 -2.1445 -2.4524 14 6 6.1693 -2.4746 -4.7717 15 6 7.3724 -3.2082 -5.3714 16 6 7.3066 -4.6925 -4.9997 17 6 7.5715 -4.8440 -3.4957 18 6 3.5671 -0.6923 1.2643 19 1 3.9098 0.3369 1.3715 20 6 4.0830 -1.5323 2.4345 21 7 5.5308 -1.3506 2.5652 22 6 6.2002 -1.9199 3.6153 23 1 5.6610 -2.5033 4.3469 24 6 7.5721 -1.7482 3.7388 25 7 8.2295 -1.0377 2.8469 26 14 8.4855 -2.5255 5.1710 27 1 7.5249 -3.2673 6.0266 28 1 9.5135 -3.4632 4.6522 29 1 9.1441 -1.4633 5.9731 30 6 2.0399 -0.7207 1.2501 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8897 34 1 1.6573 -0.2208 -2.1398 35 1 1.6978 -1.7557 -1.2389 36 1 3.9143 0.3408 -1.3673 37 1 3.9438 -1.2832 -2.0985 38 1 6.7339 -4.5351 -0.6945 39 1 6.2976 -1.3995 -4.8973 40 1 5.2577 -2.7948 -5.2763 41 1 8.2932 -2.7764 -4.9794 42 1 7.3566 -3.1048 -6.4564 43 1 8.0625 -5.2426 -5.5602 44 1 6.3177 -5.0844 -5.2374 45 1 7.3201 -5.8563 -3.1793 46 1 8.6217 -4.6428 -3.2841 47 1 3.5924 -1.2139 3.3543 48 1 3.8639 -2.5841 2.2510 49 1 6.0151 -0.8269 1.9078 50 1 9.1881 -0.9174 2.9335 51 1 1.6572 -0.2206 2.1399 52 1 1.6973 -1.7554 1.2387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656550437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:38 Heat of formation + Delta-G solvation = 69.890203 kcal Electronic energy + Delta-G solvation = -32377.092453 eV Core-core repulsion = 28378.995002 eV Total energy + Delta-G solvation = -3998.097451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.75957 -41.32466 -38.50167 -37.53966 -36.30399 -34.78037 -34.05023 -33.76541 -31.65085 -31.09792 -29.62357 -29.17203 -27.16095 -25.75779 -24.71617 -24.37914 -23.87750 -23.06742 -22.28741 -21.09547 -20.55670 -19.68538 -18.89782 -17.87834 -17.53174 -17.15349 -16.78309 -16.65627 -15.96267 -15.61664 -15.51006 -15.28466 -15.14718 -15.01438 -14.83891 -14.82204 -14.60472 -14.52294 -14.34751 -13.97862 -13.71235 -13.54801 -13.17817 -12.91022 -12.84154 -12.80538 -12.66857 -12.56002 -12.27663 -12.10355 -12.02697 -11.94992 -11.85768 -11.84578 -11.74990 -11.57125 -11.24109 -10.92071 -10.84843 -10.09966 -9.95187 -9.84858 -9.43270 -8.62831 -7.83838 -5.03636 0.66274 1.18796 1.42122 1.45729 1.54144 1.55127 2.18640 2.58533 2.62591 3.29810 3.49071 3.56525 3.69238 3.77943 3.80689 3.86458 3.90945 3.98552 4.10923 4.24218 4.32758 4.34807 4.41650 4.43660 4.49777 4.54549 4.55033 4.72964 4.74589 4.78714 4.79612 4.86699 4.87372 4.93924 4.98273 5.02301 5.03160 5.09694 5.12421 5.14035 5.15691 5.22588 5.31384 5.33094 5.43172 5.44973 5.52004 5.56906 5.85906 6.02969 6.36601 6.61904 6.99143 7.41741 7.53216 8.21055 8.44883 9.41523 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007233 B = 0.004774 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3870.404970 B = 5863.164216 C = 9215.896597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.116 4.116 5 C 0.087 3.913 6 N -0.601 5.601 7 C 0.555 3.445 8 O -0.499 6.499 9 C -0.027 4.027 10 C -0.216 4.216 11 C 0.028 3.972 12 N -0.282 5.282 13 N -0.265 5.265 14 C 0.108 3.892 15 C -0.132 4.132 16 C -0.119 4.119 17 C -0.055 4.055 18 C 0.147 3.853 19 H 0.060 0.940 20 C 0.163 3.837 21 N -0.705 5.705 22 C -0.211 4.211 23 H 0.064 0.936 24 C -0.086 4.086 25 N -0.976 5.976 26 Si 0.970 3.030 27 H -0.269 1.269 28 H -0.298 1.298 29 H -0.291 1.291 30 C -0.111 4.111 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.068 0.932 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.019 0.981 48 H 0.022 0.978 49 H 0.365 0.635 50 H 0.244 0.756 51 H 0.085 0.915 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 -2.609 -24.649 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.036 4.036 6 N -0.337 5.337 7 C 0.340 3.660 8 O -0.369 6.369 9 C -0.186 4.186 10 C -0.244 4.244 11 C -0.097 4.097 12 N -0.071 5.071 13 N -0.102 5.102 14 C -0.010 4.010 15 C -0.170 4.170 16 C -0.156 4.156 17 C -0.093 4.093 18 C 0.043 3.957 19 H 0.078 0.922 20 C 0.036 3.964 21 N -0.345 5.345 22 C -0.343 4.343 23 H 0.082 0.918 24 C -0.277 4.277 25 N -0.630 5.630 26 Si 0.800 3.200 27 H -0.194 1.194 28 H -0.226 1.226 29 H -0.218 1.218 30 C -0.150 4.150 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.147 0.853 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.108 0.892 47 H 0.037 0.963 48 H 0.040 0.960 49 H 0.196 0.804 50 H 0.053 0.947 51 H 0.103 0.897 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.518 -2.084 -24.569 27.215 hybrid contribution 1.542 -0.736 1.607 2.346 sum -9.976 -2.821 -22.962 25.194 Atomic orbital electron populations 1.21751 0.93196 1.01982 1.02555 1.21119 0.96920 0.99219 0.93438 0.90792 1.21927 0.93687 1.00884 0.98965 1.22495 0.95114 0.99629 0.86359 1.47756 1.43251 1.35070 1.07639 1.17538 0.79990 0.82007 0.86468 1.91143 1.60478 1.55061 1.30268 1.22129 1.05259 0.98878 0.92300 1.21347 1.04861 1.01574 0.96621 1.21628 1.01406 0.94329 0.92338 1.46401 1.32865 1.18374 1.09505 1.73112 1.17632 1.21635 0.97779 1.22635 1.02774 1.03449 0.72118 1.21993 0.96092 0.95288 1.03581 1.21703 1.04220 0.96455 0.93263 1.20560 0.97476 0.95988 0.95313 1.21323 0.95291 0.96179 0.82858 0.92249 1.20945 0.84450 0.96979 0.93983 1.42364 1.03118 1.60384 1.28645 1.19560 0.90994 1.22790 1.00985 0.91788 1.25421 0.97197 1.03123 1.01917 1.69863 1.06952 1.47494 1.38668 0.85087 0.78403 0.77460 0.79036 1.19378 1.22573 1.21803 1.21837 0.91738 1.01487 0.99899 0.92899 0.92148 0.91189 0.88425 0.92620 0.92386 0.86029 0.84419 0.87512 0.86787 0.91361 0.85271 0.87670 0.90548 0.88393 0.89219 0.96330 0.95997 0.80406 0.94726 0.89651 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.19 71.98 0.66 -1.64 16 2 C -0.09 -1.94 2.68 -10.77 -0.03 -1.97 16 3 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.12 -2.60 5.36 30.67 0.16 -2.44 16 5 C 0.09 2.56 6.12 86.36 0.53 3.09 16 6 N -0.60 -23.36 2.98 -799.36 -2.38 -25.74 16 7 C 0.55 25.93 7.02 86.75 0.61 26.54 16 8 O -0.50 -28.10 10.71 -3.92 -0.04 -28.14 16 9 C -0.03 -1.11 6.83 42.48 0.29 -0.82 16 10 C -0.22 -8.32 10.75 22.28 0.24 -8.08 16 11 C 0.03 0.79 6.57 41.18 0.27 1.06 16 12 N -0.28 -7.31 3.74 -333.34 -1.25 -8.56 16 13 N -0.27 -8.79 8.51 -48.05 -0.41 -9.20 16 14 C 0.11 1.45 7.17 86.33 0.62 2.07 16 15 C -0.13 -1.11 5.91 30.69 0.18 -0.93 16 16 C -0.12 -1.11 5.98 30.80 0.18 -0.92 16 17 C -0.05 -0.96 6.28 30.03 0.19 -0.77 16 18 C 0.15 5.66 2.92 44.83 0.13 5.79 16 19 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 20 C 0.16 7.92 4.86 86.38 0.42 8.34 16 21 N -0.70 -41.99 3.21 -343.46 -1.10 -43.10 16 22 C -0.21 -13.52 9.71 84.03 0.82 -12.71 16 23 H 0.06 4.02 7.83 -2.91 -0.02 4.00 16 24 C -0.09 -5.57 5.50 84.86 0.47 -5.11 16 25 N -0.98 -66.90 13.06 21.65 0.28 -66.61 16 26 Si 0.97 51.82 29.55 68.60 2.03 53.84 16 27 H -0.27 -13.59 7.11 99.48 0.71 -12.89 16 28 H -0.30 -15.91 7.11 99.48 0.71 -15.20 16 29 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 30 C -0.11 -3.15 4.62 30.53 0.14 -3.01 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.12 3.67 4.16 -27.76 -0.12 3.55 16 38 H 0.14 5.69 8.06 -2.91 -0.02 5.66 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.07 0.77 8.11 -2.39 -0.02 0.75 16 42 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 45 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.02 0.89 8.13 -2.39 -0.02 0.87 16 48 H 0.02 1.18 6.35 -2.39 -0.02 1.16 16 49 H 0.36 23.45 6.98 -92.70 -0.65 22.80 16 50 H 0.24 16.11 8.31 -92.71 -0.77 15.34 16 51 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -88.71 396.90 3.17 -85.54 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.16 Total: 33.47 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.88 Total: 8.49 kcal Atomic # 7 Polarization: -148.35 SS G_CDS: -4.86 Total: -153.21 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.04 Total: -28.14 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.03 Total: 53.84 kcal Total: -88.71 3.17 -85.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656550437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.434 kcal (2) G-P(sol) polarization free energy of solvation -88.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds