Wall clock time and date at job start Wed Apr 1 2020 05:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.30052 * 2 1 4 4 C 1.54384 * 110.34466 * 237.82243 * 2 1 3 5 5 N 1.48149 * 104.61913 * 217.26009 * 4 2 1 6 6 C 1.34777 * 127.83860 * 219.58845 * 5 4 2 7 7 O 1.21628 * 119.99723 * 174.86312 * 6 5 4 8 8 C 1.47161 * 120.00080 * 354.86275 * 6 5 4 9 9 C 1.37196 * 127.04452 * 99.60545 * 8 6 5 10 10 C 1.40088 * 105.88332 * 180.02562 * 9 8 6 11 11 N 1.30106 * 107.72632 * 359.87384 * 10 9 8 12 12 N 1.28822 * 110.78145 * 359.86732 * 11 10 9 13 13 C 1.46502 * 125.15282 * 180.20875 * 12 11 10 14 14 C 1.50874 * 123.21606 * 179.70253 * 10 9 8 15 15 C 1.53397 * 108.18266 * 343.33275 * 14 10 9 16 16 C 1.53027 * 109.87799 * 50.72503 * 15 14 10 17 17 C 1.50393 * 129.90983 * 0.25181 * 9 8 6 18 18 C 1.48147 * 104.32320 * 39.58485 * 5 4 2 19 19 C 1.54284 * 110.34274 * 122.28045 * 2 1 3 20 20 H 1.08999 * 110.34316 * 237.74306 * 19 2 1 21 21 C 1.52999 * 110.34487 * 0.02562 * 19 2 1 22 22 N 1.46504 * 109.46885 * 184.99664 * 21 19 2 23 23 C 1.36940 * 119.99586 * 180.02562 * 22 21 19 24 24 H 1.08000 * 119.99740 * 359.97438 * 23 22 21 25 25 C 1.38808 * 119.99696 * 180.02562 * 23 22 21 26 26 N 1.31620 * 119.99984 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00251 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47178 * 90.00319 * 27 25 23 29 29 H 1.48498 * 109.47132 * 210.00103 * 27 25 23 30 30 H 1.48494 * 109.46784 * 330.00250 * 27 25 23 31 31 H 1.09007 * 109.46793 * 180.73007 * 1 2 3 32 32 H 1.09004 * 109.47502 * 300.72020 * 1 2 3 33 33 H 1.08994 * 109.47112 * 60.72850 * 1 2 3 34 34 H 1.08999 * 110.40891 * 336.04635 * 4 2 1 35 35 H 1.08998 * 110.40962 * 98.47490 * 4 2 1 36 36 H 1.09005 * 109.47023 * 275.08803 * 13 12 11 37 37 H 1.08992 * 109.47172 * 35.08467 * 13 12 11 38 38 H 1.08994 * 109.47065 * 155.09244 * 13 12 11 39 39 H 1.08999 * 109.72251 * 103.00639 * 14 10 9 40 40 H 1.09000 * 109.71592 * 223.62196 * 14 10 9 41 41 H 1.09000 * 109.40358 * 170.85336 * 15 14 10 42 42 H 1.09008 * 109.40064 * 290.68578 * 15 14 10 43 43 H 1.09000 * 109.43562 * 48.62689 * 16 15 14 44 44 H 1.09007 * 109.43405 * 168.48900 * 16 15 14 45 45 H 1.09004 * 109.72453 * 283.27833 * 17 9 8 46 46 H 1.08992 * 109.73414 * 43.96220 * 17 9 8 47 47 H 1.09003 * 110.40874 * 201.63455 * 18 5 4 48 48 H 1.08989 * 110.50886 * 79.25082 * 18 5 4 49 49 H 1.08997 * 109.46795 * 304.99792 * 21 19 2 50 50 H 1.09000 * 109.46894 * 64.99744 * 21 19 2 51 51 H 0.96996 * 120.00522 * 0.02562 * 22 21 19 52 52 H 0.97000 * 120.00299 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7709 -1.2252 5 7 3.2665 -1.4809 -0.7240 6 6 4.4425 -1.6650 -1.3561 7 8 5.3702 -2.1928 -0.7729 8 6 4.6042 -1.2273 -2.7518 9 6 5.2028 -0.0741 -3.1922 10 6 5.1113 -0.1042 -4.5898 11 7 4.5025 -1.2047 -4.9232 12 7 4.1936 -1.8910 -3.8777 13 6 3.5047 -3.1838 -3.8906 14 6 5.6476 0.9919 -5.4771 15 6 5.8834 2.2361 -4.6114 16 6 6.7085 1.8630 -3.3779 17 6 5.8495 1.0365 -2.4111 18 6 2.8803 -1.9427 0.6296 19 6 2.0663 -0.7726 1.2230 20 1 2.7095 -0.1304 1.8247 21 6 0.9062 -1.3058 2.0660 22 7 1.4329 -1.9314 3.2815 23 6 0.5745 -2.4836 4.1945 24 1 -0.4907 -2.4575 4.0186 25 6 1.0736 -3.0758 5.3464 26 7 0.2486 -3.6070 6.2237 27 14 2.9161 -3.1202 5.6510 28 1 3.3237 -1.9034 6.3983 29 1 3.2574 -4.3269 6.4462 30 1 3.6317 -3.1654 4.3506 31 1 -0.3633 -1.0277 0.0131 32 1 -0.3634 0.5250 0.8835 33 1 -0.3633 0.5024 -0.8964 34 1 1.3235 -1.4846 -1.5807 35 1 2.3400 -0.0776 -2.0206 36 1 2.4278 -3.0213 -3.9362 37 1 3.8228 -3.7563 -4.7618 38 1 3.7507 -3.7357 -2.9835 39 1 6.5878 0.6736 -5.9274 40 1 4.9234 1.2192 -6.2593 41 1 6.4201 2.9855 -5.1931 42 1 4.9234 2.6434 -4.2938 43 1 7.5746 1.2767 -3.6846 44 1 7.0450 2.7715 -2.8782 45 1 5.0813 1.6703 -1.9680 46 1 6.4787 0.6166 -1.6264 47 1 3.7673 -2.1335 1.2337 48 1 2.2648 -2.8399 0.5658 49 1 0.2461 -0.4822 2.3379 50 1 0.3479 -2.0439 1.4901 51 1 2.3896 -1.9544 3.4397 52 1 0.5973 -4.0205 7.0289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672279755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:17 Heat of formation + Delta-G solvation = 52.766517 kcal Electronic energy + Delta-G solvation = -31548.936666 eV Core-core repulsion = 27550.096676 eV Total energy + Delta-G solvation = -3998.839990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.88626 -40.12726 -38.14169 -37.32872 -34.90180 -33.21846 -32.89162 -32.18944 -31.41270 -29.90992 -29.11402 -27.60910 -26.75572 -25.54875 -23.89686 -23.60133 -22.43976 -22.02545 -21.70918 -19.50679 -19.19907 -19.15392 -17.79772 -17.29688 -16.73266 -16.30222 -15.84294 -15.77088 -15.24400 -14.95193 -14.62042 -14.48070 -14.14050 -14.01144 -13.94768 -13.46337 -13.27531 -13.23742 -13.06801 -13.05556 -12.79769 -12.61568 -12.34891 -12.16992 -12.10753 -12.08395 -11.90738 -11.53137 -11.29069 -11.16219 -11.08852 -10.95769 -10.64096 -10.54243 -10.45722 -10.36976 -10.26164 -10.04464 -9.61368 -9.21494 -8.94597 -8.89327 -8.80963 -7.26231 -5.79343 -3.15386 1.43651 1.89165 2.38003 2.49354 2.84943 3.37536 3.41176 3.45864 3.98074 4.09277 4.44696 4.52672 4.57691 4.58759 4.61289 4.65610 4.74356 4.77388 4.82793 5.02774 5.04592 5.13123 5.20452 5.26108 5.28432 5.29192 5.29604 5.35784 5.44582 5.51789 5.57839 5.58560 5.61675 5.65400 5.68024 5.76238 5.81769 5.85398 5.96133 5.96416 5.98319 6.03303 6.12159 6.17543 6.30779 6.35005 6.54569 6.60034 6.67395 7.29027 7.82606 7.86673 7.95825 8.39434 9.18138 9.90771 10.09642 11.38872 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.002651 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.577995 B =10559.971128 C =10705.291212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.080 0.920 4 C 0.105 3.895 5 N -0.612 5.612 6 C 0.610 3.390 7 O -0.520 6.520 8 C -0.012 4.012 9 C -0.155 4.155 10 C 0.034 3.966 11 N -0.277 5.277 12 N -0.284 5.284 13 C 0.090 3.910 14 C -0.030 4.030 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.048 4.048 18 C 0.112 3.888 19 C -0.109 4.109 20 H 0.082 0.918 21 C 0.167 3.833 22 N -0.758 5.758 23 C -0.245 4.245 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.276 1.276 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.037 0.963 50 H 0.031 0.969 51 H 0.360 0.640 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.692 11.040 -26.023 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.018 4.018 5 N -0.345 5.345 6 C 0.395 3.605 7 O -0.395 6.395 8 C -0.138 4.138 9 C -0.166 4.166 10 C -0.126 4.126 11 N -0.106 5.106 12 N -0.072 5.072 13 C -0.050 4.050 14 C -0.069 4.069 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.086 4.086 18 C -0.009 4.009 19 C -0.129 4.129 20 H 0.101 0.899 21 C 0.040 3.960 22 N -0.404 5.404 23 C -0.375 4.375 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.202 1.202 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.055 0.945 50 H 0.049 0.951 51 H 0.193 0.807 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.617 9.840 -26.553 29.324 hybrid contribution 1.437 0.077 1.066 1.791 sum 9.054 9.917 -25.486 28.807 Atomic orbital electron populations 1.21912 0.93556 1.02986 1.02010 1.22029 0.96777 0.99206 0.93445 0.90121 1.22558 0.86407 0.95585 0.97207 1.48985 1.12234 1.54895 1.18380 1.16549 0.81383 0.78753 0.83800 1.90875 1.38768 1.42986 1.66837 1.20819 1.07745 0.96668 0.88615 1.20298 1.05433 0.96546 0.94295 1.21843 1.02328 0.95292 0.93120 1.72791 1.17867 1.06425 1.13542 1.45670 1.42768 1.17257 1.01498 1.22139 0.97463 0.80050 1.05351 1.19997 1.00654 0.90490 0.95766 1.21571 1.00833 0.96586 0.96407 1.21568 0.98278 0.99736 0.95781 1.20013 0.98282 0.93484 0.96809 1.22578 0.99701 0.97464 0.81202 1.22404 0.98224 0.96249 0.96022 0.89915 1.20835 0.92819 0.95510 0.86882 1.42784 1.05209 1.70617 1.21742 1.19022 0.91150 1.29467 0.97863 0.89196 1.24669 0.97045 1.00376 0.96925 1.69699 1.33154 1.43517 1.11757 0.86583 0.86915 0.77439 0.77814 1.21043 1.21695 1.20226 0.91523 0.91178 0.92980 0.90686 0.90615 0.89618 0.88405 0.88999 0.90213 0.90206 0.90982 0.91474 0.91585 0.91207 0.90712 0.90651 0.89749 0.89805 0.94545 0.95097 0.80709 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.91 37.16 0.29 -1.17 16 2 C -0.09 -1.02 3.66 -89.22 -0.33 -1.34 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.11 1.09 6.42 -2.41 -0.02 1.08 16 5 N -0.61 -8.03 3.32 -170.67 -0.57 -8.59 16 6 C 0.61 9.02 7.04 -12.64 -0.09 8.94 16 7 O -0.52 -9.66 17.36 5.25 0.09 -9.57 16 8 C -0.01 -0.15 5.64 -82.31 -0.46 -0.62 16 9 C -0.16 -1.87 6.02 -104.46 -0.63 -2.49 16 10 C 0.03 0.39 7.13 -82.54 -0.59 -0.20 16 11 N -0.28 -3.40 11.89 33.65 0.40 -3.00 16 12 N -0.28 -3.35 3.77 -64.10 -0.24 -3.59 16 13 C 0.09 0.75 11.22 59.85 0.67 1.42 16 14 C -0.03 -0.24 6.32 -27.59 -0.17 -0.41 16 15 C -0.12 -0.75 5.85 -26.51 -0.16 -0.91 16 16 C -0.12 -0.87 5.88 -26.47 -0.16 -1.03 16 17 C -0.05 -0.48 6.22 -27.78 -0.17 -0.65 16 18 C 0.11 1.65 6.43 -2.40 -0.02 1.64 16 19 C -0.11 -1.54 3.10 -89.22 -0.28 -1.81 16 20 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 21 C 0.17 2.91 4.39 -4.04 -0.02 2.89 16 22 N -0.76 -17.27 5.28 -59.91 -0.32 -17.59 16 23 C -0.25 -6.78 10.47 -15.06 -0.16 -6.94 16 24 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 27 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 28 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 31 H 0.07 0.70 6.75 -51.93 -0.35 0.35 16 32 H 0.07 0.75 6.86 -51.93 -0.36 0.39 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 35 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.45 8.10 -51.92 -0.42 0.03 16 43 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 44 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.41 7.85 -51.93 -0.41 1.01 16 48 H 0.08 1.26 7.75 -51.94 -0.40 0.86 16 49 H 0.04 0.64 6.57 -51.93 -0.34 0.30 16 50 H 0.03 0.54 6.86 -51.93 -0.36 0.19 16 51 H 0.36 8.17 5.47 -40.82 -0.22 7.94 16 52 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 406.55 15.07 6.13 6.13 Total: -1.00 -34.77 406.55 -9.53 -44.31 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.72 Total: 4.34 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.37 Total: -1.53 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.05 Total: -61.11 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.77 -9.53 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672279755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.072 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds