Wall clock time and date at job start Wed Apr 1 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.30052 * 2 1 4 4 C 1.54384 * 110.34466 * 237.82243 * 2 1 3 5 5 N 1.48149 * 104.61913 * 217.26009 * 4 2 1 6 6 C 1.34777 * 127.83860 * 219.58845 * 5 4 2 7 7 O 1.21628 * 119.99723 * 174.86312 * 6 5 4 8 8 C 1.47161 * 120.00080 * 354.86275 * 6 5 4 9 9 C 1.37196 * 127.04452 * 99.60545 * 8 6 5 10 10 C 1.40088 * 105.88332 * 180.02562 * 9 8 6 11 11 N 1.30106 * 107.72632 * 359.87384 * 10 9 8 12 12 N 1.28822 * 110.78145 * 359.86732 * 11 10 9 13 13 C 1.46502 * 125.15282 * 180.20875 * 12 11 10 14 14 C 1.50874 * 123.21606 * 179.70253 * 10 9 8 15 15 C 1.53397 * 108.18266 * 343.33275 * 14 10 9 16 16 C 1.53027 * 109.87799 * 50.72503 * 15 14 10 17 17 C 1.50393 * 129.90983 * 0.25181 * 9 8 6 18 18 C 1.48147 * 104.32320 * 39.58485 * 5 4 2 19 19 C 1.54284 * 110.34274 * 122.28045 * 2 1 3 20 20 H 1.08999 * 110.34316 * 237.74306 * 19 2 1 21 21 C 1.52999 * 110.34487 * 0.02562 * 19 2 1 22 22 N 1.46504 * 109.46885 * 184.99664 * 21 19 2 23 23 C 1.36940 * 119.99586 * 180.02562 * 22 21 19 24 24 H 1.08000 * 119.99740 * 359.97438 * 23 22 21 25 25 C 1.38808 * 119.99696 * 180.02562 * 23 22 21 26 26 N 1.31620 * 119.99984 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00251 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47178 * 90.00319 * 27 25 23 29 29 H 1.48498 * 109.47132 * 210.00103 * 27 25 23 30 30 H 1.48494 * 109.46784 * 330.00250 * 27 25 23 31 31 H 1.09007 * 109.46793 * 180.73007 * 1 2 3 32 32 H 1.09004 * 109.47502 * 300.72020 * 1 2 3 33 33 H 1.08994 * 109.47112 * 60.72850 * 1 2 3 34 34 H 1.08999 * 110.40891 * 336.04635 * 4 2 1 35 35 H 1.08998 * 110.40962 * 98.47490 * 4 2 1 36 36 H 1.09005 * 109.47023 * 275.08803 * 13 12 11 37 37 H 1.08992 * 109.47172 * 35.08467 * 13 12 11 38 38 H 1.08994 * 109.47065 * 155.09244 * 13 12 11 39 39 H 1.08999 * 109.72251 * 103.00639 * 14 10 9 40 40 H 1.09000 * 109.71592 * 223.62196 * 14 10 9 41 41 H 1.09000 * 109.40358 * 170.85336 * 15 14 10 42 42 H 1.09008 * 109.40064 * 290.68578 * 15 14 10 43 43 H 1.09000 * 109.43562 * 48.62689 * 16 15 14 44 44 H 1.09007 * 109.43405 * 168.48900 * 16 15 14 45 45 H 1.09004 * 109.72453 * 283.27833 * 17 9 8 46 46 H 1.08992 * 109.73414 * 43.96220 * 17 9 8 47 47 H 1.09003 * 110.40874 * 201.63455 * 18 5 4 48 48 H 1.08989 * 110.50886 * 79.25082 * 18 5 4 49 49 H 1.08997 * 109.46795 * 304.99792 * 21 19 2 50 50 H 1.09000 * 109.46894 * 64.99744 * 21 19 2 51 51 H 0.96996 * 120.00522 * 0.02562 * 22 21 19 52 52 H 0.97000 * 120.00299 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7709 -1.2252 5 7 3.2665 -1.4809 -0.7240 6 6 4.4425 -1.6650 -1.3561 7 8 5.3702 -2.1928 -0.7729 8 6 4.6042 -1.2273 -2.7518 9 6 5.2028 -0.0741 -3.1922 10 6 5.1113 -0.1042 -4.5898 11 7 4.5025 -1.2047 -4.9232 12 7 4.1936 -1.8910 -3.8777 13 6 3.5047 -3.1838 -3.8906 14 6 5.6476 0.9919 -5.4771 15 6 5.8834 2.2361 -4.6114 16 6 6.7085 1.8630 -3.3779 17 6 5.8495 1.0365 -2.4111 18 6 2.8803 -1.9427 0.6296 19 6 2.0663 -0.7726 1.2230 20 1 2.7095 -0.1304 1.8247 21 6 0.9062 -1.3058 2.0660 22 7 1.4329 -1.9314 3.2815 23 6 0.5745 -2.4836 4.1945 24 1 -0.4907 -2.4575 4.0186 25 6 1.0736 -3.0758 5.3464 26 7 0.2486 -3.6070 6.2237 27 14 2.9161 -3.1202 5.6510 28 1 3.3237 -1.9034 6.3983 29 1 3.2574 -4.3269 6.4462 30 1 3.6317 -3.1654 4.3506 31 1 -0.3633 -1.0277 0.0131 32 1 -0.3634 0.5250 0.8835 33 1 -0.3633 0.5024 -0.8964 34 1 1.3235 -1.4846 -1.5807 35 1 2.3400 -0.0776 -2.0206 36 1 2.4278 -3.0213 -3.9362 37 1 3.8228 -3.7563 -4.7618 38 1 3.7507 -3.7357 -2.9835 39 1 6.5878 0.6736 -5.9274 40 1 4.9234 1.2192 -6.2593 41 1 6.4201 2.9855 -5.1931 42 1 4.9234 2.6434 -4.2938 43 1 7.5746 1.2767 -3.6846 44 1 7.0450 2.7715 -2.8782 45 1 5.0813 1.6703 -1.9680 46 1 6.4787 0.6166 -1.6264 47 1 3.7673 -2.1335 1.2337 48 1 2.2648 -2.8399 0.5658 49 1 0.2461 -0.4822 2.3379 50 1 0.3479 -2.0439 1.4901 51 1 2.3896 -1.9544 3.4397 52 1 0.5973 -4.0205 7.0289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672279755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:16 Heat of formation + Delta-G solvation = 30.716824 kcal Electronic energy + Delta-G solvation = -31549.892813 eV Core-core repulsion = 27550.096676 eV Total energy + Delta-G solvation = -3999.796136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.74761 -41.24065 -39.34489 -37.98701 -36.59688 -34.52219 -33.74012 -33.19341 -32.95967 -31.05325 -30.14685 -28.37350 -27.77538 -26.88862 -25.11263 -24.40292 -23.69385 -23.13546 -22.72718 -20.57256 -20.33001 -20.04652 -19.27034 -18.61904 -17.72474 -17.26709 -16.94469 -16.75500 -16.45269 -16.21409 -15.79621 -15.56834 -15.29574 -14.87915 -14.85121 -14.73760 -14.51214 -14.31968 -14.16968 -13.87876 -13.74010 -13.67827 -13.47981 -13.31868 -13.13894 -12.95989 -12.93821 -12.85622 -12.73428 -12.28479 -12.16285 -11.83661 -11.80338 -11.74918 -11.65596 -11.63360 -11.42600 -11.32863 -11.19092 -10.93984 -10.10580 -10.04555 -9.63570 -9.27644 -8.03352 -5.35556 0.49888 0.91491 1.37164 1.37928 1.44956 1.46085 1.55292 1.88226 2.46469 3.08939 3.25743 3.28839 3.43494 3.52267 3.73914 3.88033 3.93438 4.00357 4.02940 4.08195 4.10251 4.18265 4.30892 4.31323 4.36263 4.43880 4.47357 4.52392 4.57476 4.60143 4.64575 4.68015 4.73660 4.74907 4.76787 4.92499 4.97953 5.05507 5.07195 5.14917 5.18652 5.19395 5.23077 5.29871 5.37900 5.49070 5.52199 5.55641 5.74077 5.77296 6.20464 6.21824 6.70194 6.99591 7.07966 7.85212 8.01408 9.18117 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.002651 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.577995 B =10559.971128 C =10705.291212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.096 0.904 4 C 0.108 3.892 5 N -0.605 5.605 6 C 0.614 3.386 7 O -0.569 6.569 8 C -0.032 4.032 9 C -0.162 4.162 10 C 0.029 3.971 11 N -0.289 5.289 12 N -0.285 5.285 13 C 0.083 3.917 14 C -0.031 4.031 15 C -0.110 4.110 16 C -0.113 4.113 17 C -0.050 4.050 18 C 0.113 3.887 19 C -0.100 4.100 20 H 0.078 0.922 21 C 0.166 3.834 22 N -0.762 5.762 23 C -0.227 4.227 24 H 0.063 0.937 25 C -0.061 4.061 26 N -0.982 5.982 27 Si 0.946 3.054 28 H -0.278 1.278 29 H -0.297 1.297 30 H -0.258 1.258 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.042 0.958 50 H 0.036 0.964 51 H 0.362 0.638 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.238 13.168 -28.839 32.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.114 0.886 4 C -0.013 4.013 5 N -0.336 5.336 6 C 0.401 3.599 7 O -0.447 6.447 8 C -0.159 4.159 9 C -0.173 4.173 10 C -0.130 4.130 11 N -0.119 5.119 12 N -0.074 5.074 13 C -0.057 4.057 14 C -0.070 4.070 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.088 4.088 18 C -0.009 4.009 19 C -0.120 4.120 20 H 0.097 0.903 21 C 0.041 3.959 22 N -0.408 5.408 23 C -0.358 4.358 24 H 0.081 0.919 25 C -0.253 4.253 26 N -0.633 5.633 27 Si 0.774 3.226 28 H -0.205 1.205 29 H -0.224 1.224 30 H -0.183 1.183 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.195 0.805 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.137 12.008 -29.436 32.816 hybrid contribution 1.168 -0.576 1.864 2.274 sum 9.305 11.433 -27.572 31.265 Atomic orbital electron populations 1.21887 0.92567 1.02785 1.02982 1.22008 0.97429 0.99425 0.91477 0.88562 1.22730 0.85404 0.95944 0.97241 1.48973 1.12640 1.54373 1.17661 1.16759 0.80987 0.77846 0.84349 1.90841 1.40459 1.45301 1.68071 1.20678 1.09436 0.97712 0.88035 1.20652 1.04936 0.96663 0.95041 1.22423 1.01694 0.95614 0.93309 1.72793 1.18421 1.06977 1.13688 1.45948 1.42675 1.17850 1.00906 1.22385 0.98521 0.79069 1.05699 1.20182 1.01122 0.89908 0.95769 1.21565 1.00990 0.96402 0.95827 1.21575 0.97744 0.99835 0.95894 1.20092 0.98496 0.93391 0.96838 1.22440 0.98696 0.97815 0.81973 1.22260 0.96803 0.96122 0.96832 0.90327 1.21015 0.94186 0.95377 0.85365 1.42863 1.04781 1.70561 1.22587 1.19041 0.90684 1.27828 0.98232 0.91862 1.25407 1.01491 1.01189 0.97186 1.69861 1.35260 1.45627 1.12589 0.85540 0.81699 0.77084 0.78257 1.20464 1.22427 1.18287 0.92238 0.91939 0.90395 0.89029 0.89339 0.87545 0.86866 0.89787 0.89450 0.88995 0.88551 0.91355 0.92137 0.89553 0.89915 0.92671 0.92151 0.90109 0.93972 0.94575 0.80536 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.91 71.98 0.57 -1.87 16 2 C -0.08 -1.56 3.66 -9.89 -0.04 -1.60 16 3 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.11 1.96 6.42 86.53 0.56 2.52 16 5 N -0.60 -15.28 3.32 -812.12 -2.69 -17.98 16 6 C 0.61 18.13 7.04 86.59 0.61 18.74 16 7 O -0.57 -21.75 17.36 -4.12 -0.07 -21.82 16 8 C -0.03 -0.81 5.64 40.44 0.23 -0.58 16 9 C -0.16 -3.71 6.02 -19.76 -0.12 -3.83 16 10 C 0.03 0.61 7.13 43.32 0.31 0.92 16 11 N -0.29 -6.63 11.89 -47.45 -0.56 -7.19 16 12 N -0.29 -6.40 3.77 -356.72 -1.34 -7.74 16 13 C 0.08 1.27 11.22 127.77 1.43 2.70 16 14 C -0.03 -0.40 6.32 30.04 0.19 -0.21 16 15 C -0.11 -1.08 5.85 30.74 0.18 -0.90 16 16 C -0.11 -1.45 5.88 30.76 0.18 -1.27 16 17 C -0.05 -0.95 6.22 29.91 0.19 -0.76 16 18 C 0.11 3.27 6.43 86.54 0.56 3.83 16 19 C -0.10 -2.68 3.10 -9.88 -0.03 -2.71 16 20 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 21 C 0.17 5.62 4.39 86.38 0.38 5.99 16 22 N -0.76 -34.34 5.28 -343.45 -1.81 -36.15 16 23 C -0.23 -12.65 10.47 84.03 0.88 -11.77 16 24 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 25 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 26 N -0.98 -62.82 13.97 21.65 0.30 -62.51 16 27 Si 0.95 46.24 27.74 68.60 1.90 48.15 16 28 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 30 H -0.26 -11.66 6.52 99.48 0.65 -11.01 16 31 H 0.06 1.10 6.75 -2.38 -0.02 1.08 16 32 H 0.06 1.17 6.86 -2.38 -0.02 1.16 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.41 7.86 -2.39 -0.02 1.39 16 35 H 0.09 1.46 7.51 -2.39 -0.02 1.44 16 36 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.41 7.67 -2.39 -0.02 1.40 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 42 H 0.07 0.68 8.10 -2.38 -0.02 0.66 16 43 H 0.06 0.85 8.11 -2.39 -0.02 0.83 16 44 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.08 1.39 8.14 -2.38 -0.02 1.38 16 46 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.06 2.05 7.85 -2.39 -0.02 2.03 16 48 H 0.08 2.39 7.75 -2.39 -0.02 2.37 16 49 H 0.04 1.42 6.57 -2.39 -0.02 1.41 16 50 H 0.04 1.22 6.86 -2.39 -0.02 1.20 16 51 H 0.36 16.07 5.47 -92.71 -0.51 15.56 16 52 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -77.17 406.55 2.61 -74.56 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.35 Total: 24.63 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 6.54 Total: 6.07 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -6.11 Total: -131.58 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.15 kcal Total: -77.17 2.61 -74.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672279755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.278 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds