Wall clock time and date at job start Wed Apr 1 2020 04:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.45695 * 2 1 4 4 C 1.53038 * 109.45882 * 240.03093 * 2 1 3 5 5 C 1.53192 * 109.31266 * 178.61324 * 4 2 1 6 6 N 1.46929 * 108.77507 * 54.63015 * 5 4 2 7 7 C 1.34785 * 120.62788 * 126.37120 * 6 5 4 8 8 O 1.21570 * 119.99594 * 173.88614 * 7 6 5 9 9 C 1.47709 * 120.00124 * 353.88653 * 7 6 5 10 10 C 1.41501 * 126.51455 * 173.13292 * 9 7 6 11 11 C 1.35370 * 105.49919 * 179.90227 * 10 9 7 12 12 C 1.50698 * 126.38399 * 180.15696 * 11 10 9 13 13 C 1.52996 * 117.50050 * 33.98249 * 12 11 10 14 14 C 1.52995 * 117.49791 * 325.32006 * 12 11 10 15 15 N 1.35039 * 107.22848 * 0.35041 * 11 10 9 16 16 C 1.46498 * 124.88436 * 179.76329 * 15 11 10 17 17 N 1.28470 * 110.23080 * 359.77040 * 15 11 10 18 18 C 1.46922 * 118.73961 * 306.39368 * 6 5 4 19 19 H 1.09001 * 109.58962 * 293.81840 * 18 6 5 20 20 C 1.52998 * 109.58707 * 173.53640 * 18 6 5 21 21 N 1.46508 * 109.47253 * 73.38437 * 20 18 6 22 22 C 1.36932 * 120.00087 * 184.34126 * 21 20 18 23 23 H 1.08002 * 120.00442 * 0.02562 * 22 21 20 24 24 C 1.38810 * 119.99696 * 180.02562 * 22 21 20 25 25 N 1.31620 * 120.00519 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99862 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47147 * 59.99889 * 26 24 22 28 28 H 1.48503 * 109.47154 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47249 * 299.99994 * 26 24 22 30 30 C 1.53034 * 109.46109 * 119.97284 * 2 1 3 31 31 H 1.08994 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47062 * 299.99775 * 1 2 3 33 33 H 1.08994 * 109.46921 * 59.99868 * 1 2 3 34 34 H 1.08998 * 109.49337 * 298.56029 * 4 2 1 35 35 H 1.08998 * 109.50096 * 58.62732 * 4 2 1 36 36 H 1.09000 * 109.58906 * 174.41550 * 5 4 2 37 37 H 1.09001 * 109.58696 * 294.70346 * 5 4 2 38 38 H 1.08001 * 127.25206 * 0.02562 * 10 9 7 39 39 H 1.09004 * 115.54796 * 179.65346 * 12 11 10 40 40 H 1.08996 * 117.49755 * 0.02562 * 13 12 11 41 41 H 1.08998 * 117.50045 * 145.02321 * 13 12 11 42 42 H 1.09004 * 117.49990 * 214.98108 * 14 12 11 43 43 H 1.08999 * 117.50099 * 359.97438 * 14 12 11 44 44 H 1.08998 * 109.47471 * 269.98115 * 16 15 11 45 45 H 1.09000 * 109.46857 * 29.98123 * 16 15 11 46 46 H 1.08998 * 109.47093 * 149.97788 * 16 15 11 47 47 H 1.09001 * 109.47351 * 193.38649 * 20 18 6 48 48 H 1.08999 * 109.47609 * 313.38766 * 20 18 6 49 49 H 0.96998 * 119.99215 * 4.34557 * 21 20 18 50 50 H 0.96999 * 120.00115 * 179.97438 * 25 24 22 51 51 H 1.09000 * 109.49911 * 301.33470 * 30 2 1 52 52 H 1.08996 * 109.49998 * 61.43599 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2487 0.0001 7 6 4.9615 -2.2577 0.0002 8 8 5.4486 -2.6381 1.0471 9 6 5.3490 -2.9012 -1.2717 10 6 6.3645 -3.8704 -1.4498 11 6 6.3553 -4.1654 -2.7709 12 6 7.2528 -5.1517 -3.4729 13 6 7.6707 -6.4027 -2.6976 14 6 8.6879 -5.2895 -2.9609 15 7 5.3948 -3.4080 -3.3431 16 6 5.0587 -3.4177 -4.7690 17 7 4.8183 -2.6777 -2.4573 18 6 3.5714 -0.6883 1.2643 19 1 3.9143 0.3412 1.3673 20 6 4.0941 -1.5226 2.4355 21 7 5.5199 -1.2490 2.6320 22 6 6.2284 -1.9497 3.5712 23 1 5.7363 -2.7043 4.1669 24 6 7.5792 -1.6901 3.7577 25 7 8.1792 -0.7709 3.0315 26 14 8.5460 -2.6464 5.0385 27 1 8.5005 -4.0947 4.7135 28 1 9.9572 -2.1841 5.0405 29 1 7.9489 -2.4211 6.3794 30 6 2.0399 -0.7209 1.2499 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6979 -1.7557 -1.2381 35 1 1.6567 -0.2212 -2.1398 36 1 3.9417 -1.2847 -2.0983 37 1 3.9143 0.3406 -1.3700 38 1 7.0096 -4.2884 -0.6911 39 1 7.0889 -5.2556 -4.5455 40 1 7.2962 -6.5125 -1.6799 41 1 7.7823 -7.3296 -3.2601 42 1 9.4682 -5.4845 -3.6966 43 1 8.9831 -4.6665 -2.1166 44 1 5.6625 -2.6745 -5.2897 45 1 5.2613 -4.4054 -5.1833 46 1 4.0023 -3.1807 -4.8949 47 1 3.5459 -1.2616 3.3407 48 1 3.9539 -2.5815 2.2185 49 1 5.9620 -0.5715 2.0968 50 1 9.1230 -0.5892 3.1621 51 1 1.6573 -0.2209 2.1398 52 1 1.6979 -1.7557 1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689090472.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:09 Heat of formation + Delta-G solvation = 132.442868 kcal Electronic energy + Delta-G solvation = -32254.273129 eV Core-core repulsion = 28258.888165 eV Total energy + Delta-G solvation = -3995.384964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.55055 -39.76980 -37.33028 -37.05711 -34.49882 -33.59361 -33.09746 -31.78574 -30.24602 -29.61737 -28.23359 -27.16535 -25.28021 -23.85016 -23.33863 -22.59114 -22.51315 -22.26425 -20.82682 -20.07722 -19.74266 -18.49776 -17.20809 -16.67965 -16.20427 -16.08234 -15.36043 -15.12946 -14.77176 -14.52097 -14.35423 -14.00093 -13.82187 -13.79154 -13.40752 -13.21383 -13.17835 -12.85078 -12.70294 -12.63295 -12.45631 -12.05579 -11.89550 -11.77279 -11.68043 -11.52813 -11.44121 -11.13725 -11.10038 -10.77828 -10.70086 -10.63153 -10.58571 -10.50857 -10.16555 -9.77935 -9.56359 -9.37846 -8.84374 -8.59852 -8.49357 -8.42770 -7.82846 -6.36712 -5.41221 -2.60490 1.83701 2.36306 2.50517 3.59087 3.63690 3.66586 3.68600 3.80035 4.15088 4.25146 4.43363 4.69663 4.78940 4.82025 4.82864 4.90316 4.92223 4.93793 5.01331 5.09256 5.14018 5.38064 5.45090 5.49635 5.50765 5.61844 5.70329 5.71823 5.74564 5.80171 5.85513 5.90850 5.93068 5.96040 6.01453 6.10825 6.11882 6.22087 6.24341 6.25923 6.29152 6.31913 6.55168 6.67730 6.70411 6.85484 6.97830 7.11634 7.46220 7.99317 8.05986 8.24562 8.76428 9.12646 9.87816 10.47992 10.83204 11.83154 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006481 B = 0.005351 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4319.277635 B = 5231.569444 C = 9062.007395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.121 4.121 5 C 0.079 3.921 6 N -0.602 5.602 7 C 0.555 3.445 8 O -0.428 6.428 9 C 0.016 3.984 10 C -0.174 4.174 11 C 0.042 3.958 12 C -0.096 4.096 13 C -0.163 4.163 14 C -0.162 4.162 15 N -0.293 5.293 16 C 0.088 3.912 17 N -0.275 5.275 18 C 0.143 3.857 19 H 0.067 0.933 20 C 0.161 3.839 21 N -0.695 5.695 22 C -0.195 4.195 23 H 0.063 0.937 24 C -0.024 4.024 25 N -0.941 5.941 26 Si 0.899 3.101 27 H -0.290 1.290 28 H -0.295 1.295 29 H -0.291 1.291 30 C -0.120 4.120 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.051 0.949 38 H 0.159 0.841 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.012 0.988 48 H 0.040 0.960 49 H 0.379 0.621 50 H 0.248 0.752 51 H 0.071 0.929 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.650 -5.045 -20.323 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.159 4.159 5 C -0.045 4.045 6 N -0.340 5.340 7 C 0.338 3.662 8 O -0.292 6.292 9 C -0.145 4.145 10 C -0.202 4.202 11 C -0.082 4.082 12 C -0.116 4.116 13 C -0.201 4.201 14 C -0.200 4.200 15 N -0.079 5.079 16 C -0.053 4.053 17 N -0.109 5.109 18 C 0.040 3.960 19 H 0.085 0.915 20 C 0.033 3.967 21 N -0.337 5.337 22 C -0.328 4.328 23 H 0.081 0.919 24 C -0.218 4.218 25 N -0.593 5.593 26 Si 0.732 3.268 27 H -0.218 1.218 28 H -0.221 1.221 29 H -0.218 1.218 30 C -0.158 4.158 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.069 0.931 38 H 0.177 0.823 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.030 0.970 48 H 0.057 0.943 49 H 0.213 0.787 50 H 0.058 0.942 51 H 0.090 0.910 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.160 -4.775 -20.238 23.599 hybrid contribution 1.279 -0.608 0.577 1.529 sum -9.881 -5.383 -19.661 22.653 Atomic orbital electron populations 1.21813 0.95522 1.01531 1.01261 1.21146 0.95131 0.99627 0.95324 0.91283 1.21893 0.96126 1.00673 0.97226 1.22475 0.93531 0.99710 0.88784 1.47641 1.44365 1.35664 1.06289 1.17223 0.80523 0.81967 0.86529 1.91356 1.49770 1.60134 1.27982 1.22431 0.98906 1.01035 0.92085 1.21447 1.02251 1.01697 0.94784 1.20341 0.95760 0.99159 0.92948 1.20237 0.95955 0.97443 0.97973 1.23102 1.02870 0.92168 1.01929 1.23123 0.90859 1.02235 1.03768 1.45337 1.25444 1.28980 1.08143 1.22048 1.03598 1.03955 0.75666 1.73126 1.22617 1.16795 0.98381 1.21461 0.92282 0.97991 0.84252 0.91478 1.20852 0.87171 0.97049 0.91632 1.42187 1.03578 1.44231 1.43718 1.19059 0.91390 1.12972 1.09344 0.91944 1.24560 0.96619 1.00168 1.00415 1.69649 1.10089 1.36039 1.43507 0.86356 0.79320 0.79607 0.81542 1.21779 1.22133 1.21823 1.21958 0.95329 1.01024 0.97539 0.92912 0.92801 0.93056 0.91973 0.91743 0.85021 0.93063 0.82325 0.87018 0.87827 0.88236 0.88189 0.87659 0.90092 0.89210 0.88807 0.97048 0.94267 0.78734 0.94193 0.91004 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 2 C -0.09 -1.13 2.68 -90.58 -0.24 -1.37 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.12 -1.47 5.36 -26.61 -0.14 -1.61 16 5 C 0.08 1.17 6.32 -3.71 -0.02 1.15 16 6 N -0.60 -11.03 2.97 -166.37 -0.49 -11.53 16 7 C 0.55 11.80 7.42 -12.39 -0.09 11.71 16 8 O -0.43 -10.97 10.39 5.30 0.06 -10.92 16 9 C 0.02 0.29 6.87 -82.77 -0.57 -0.28 16 10 C -0.17 -3.01 9.86 -39.36 -0.39 -3.40 16 11 C 0.04 0.57 6.60 -82.20 -0.54 0.02 16 12 C -0.10 -0.95 5.94 -91.78 -0.54 -1.49 16 13 C -0.16 -1.52 10.05 -26.69 -0.27 -1.79 16 14 C -0.16 -1.58 10.06 -26.70 -0.27 -1.85 16 15 N -0.29 -3.68 3.70 -63.85 -0.24 -3.92 16 16 C 0.09 0.62 11.05 59.85 0.66 1.28 16 17 N -0.27 -4.23 8.38 33.42 0.28 -3.95 16 18 C 0.14 2.64 2.90 -67.60 -0.20 2.44 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 20 C 0.16 3.64 4.90 -4.04 -0.02 3.62 16 21 N -0.69 -19.25 3.27 -59.91 -0.20 -19.44 16 22 C -0.20 -5.94 9.21 -15.06 -0.14 -6.08 16 23 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 25 N -0.94 -30.62 13.06 55.49 0.72 -29.90 16 26 Si 0.90 24.24 29.55 -169.99 -5.02 19.21 16 27 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 28 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 29 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 30 C -0.12 -1.72 4.62 -26.61 -0.12 -1.84 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.13 1.97 3.76 -108.55 -0.41 1.56 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.16 2.89 8.06 -52.49 -0.42 2.47 16 39 H 0.11 0.80 7.16 -51.93 -0.37 0.42 16 40 H 0.10 1.12 7.95 -51.93 -0.41 0.71 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.24 7.96 -51.93 -0.41 0.82 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.42 7.12 -51.93 -0.37 0.05 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 48 H 0.04 0.96 6.36 -51.93 -0.33 0.63 16 49 H 0.38 11.26 7.61 -40.82 -0.31 10.94 16 50 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 51 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -36.83 405.39 -10.36 -47.19 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.92 Total: 8.53 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.65 Total: -1.40 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: 0.08 Total: -68.73 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.06 Total: -10.92 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.02 Total: 19.21 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.83 -10.36 -47.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689090472.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.633 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds