Wall clock time and date at job start Wed Apr 1 2020 04:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.45796 * 2 1 4 4 C 1.53040 * 109.46196 * 240.02520 * 2 1 3 5 5 C 1.53192 * 109.31195 * 178.61347 * 4 2 1 6 6 N 1.46928 * 108.77848 * 54.63608 * 5 4 2 7 7 C 1.34770 * 120.63519 * 126.36432 * 6 5 4 8 8 O 1.21607 * 120.00395 * 186.87114 * 7 6 5 9 9 C 1.47413 * 119.99663 * 6.87271 * 7 6 5 10 10 N 1.31866 * 125.93818 * 6.32491 * 9 7 6 11 11 C 1.33367 * 109.15991 * 179.97438 * 10 9 7 12 12 C 1.34876 * 108.15675 * 359.97438 * 11 10 9 13 13 N 1.35669 * 107.36812 * 0.04418 * 12 11 10 14 14 C 1.46454 * 124.57714 * 179.91647 * 13 12 11 15 15 C 1.53279 * 108.75428 * 342.81429 * 14 13 12 16 16 C 1.53148 * 109.61717 * 50.49214 * 15 14 13 17 17 C 1.50763 * 128.32453 * 180.12831 * 12 11 10 18 18 C 1.46927 * 118.73456 * 306.64502 * 6 5 4 19 19 H 1.09000 * 109.58522 * 293.56230 * 18 6 5 20 20 C 1.53004 * 109.58676 * 173.14040 * 18 6 5 21 21 N 1.46498 * 109.47001 * 68.55434 * 20 18 6 22 22 C 1.36943 * 120.00181 * 174.78211 * 21 20 18 23 23 H 1.08001 * 119.99697 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99936 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00458 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99974 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47160 * 59.99599 * 26 24 22 28 28 H 1.48497 * 109.47254 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47247 * 299.99879 * 26 24 22 30 30 C 1.52763 * 109.01324 * 53.30706 * 18 6 5 31 31 H 1.09002 * 109.46870 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47331 * 299.97200 * 1 2 3 33 33 H 1.09001 * 109.46698 * 59.97505 * 1 2 3 34 34 H 1.08995 * 109.49705 * 58.66522 * 4 2 1 35 35 H 1.08995 * 109.52240 * 298.57968 * 4 2 1 36 36 H 1.08999 * 109.58673 * 294.84906 * 5 4 2 37 37 H 1.09001 * 109.70517 * 174.49230 * 5 4 2 38 38 H 1.08005 * 125.92741 * 180.02562 * 11 10 9 39 39 H 1.08996 * 109.59283 * 223.03484 * 14 13 12 40 40 H 1.09004 * 109.70755 * 102.66234 * 14 13 12 41 41 H 1.09000 * 109.44829 * 170.53344 * 15 14 13 42 42 H 1.09000 * 109.44379 * 290.44647 * 15 14 13 43 43 H 1.08997 * 109.50864 * 50.46451 * 16 15 14 44 44 H 1.08999 * 109.50931 * 170.60524 * 16 15 14 45 45 H 1.08999 * 109.73311 * 283.78667 * 17 12 11 46 46 H 1.09007 * 109.72924 * 44.42626 * 17 12 11 47 47 H 1.08998 * 109.47240 * 188.55531 * 20 18 6 48 48 H 1.09000 * 109.47297 * 308.55694 * 20 18 6 49 49 H 0.97001 * 119.99851 * 354.77858 * 21 20 18 50 50 H 0.97002 * 120.00256 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.56680 * 185.55244 * 30 18 6 52 52 H 1.09005 * 109.38569 * 65.51205 * 30 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2641 6 7 4.0680 -1.2487 0.0003 7 6 4.9614 -2.2577 0.0005 8 8 5.2704 -2.7961 1.0462 9 6 5.5642 -2.7086 -1.2669 10 7 5.4063 -2.1380 -2.4452 11 6 6.1000 -2.8194 -3.3580 12 6 6.7131 -3.8484 -2.7381 13 7 6.3807 -3.7857 -1.4242 14 6 6.8425 -4.7296 -0.4041 15 6 7.3699 -5.9890 -1.1007 16 6 8.3655 -5.5926 -2.1948 17 6 7.6113 -4.9001 -3.3381 18 6 3.5671 -0.6921 1.2644 19 1 3.9097 0.3371 1.3716 20 6 4.0830 -1.5318 2.4347 21 7 5.5307 -1.3500 2.5655 22 6 6.2006 -1.9213 3.6144 23 1 5.6616 -2.5057 4.3454 24 6 7.5723 -1.7486 3.7385 25 7 8.2292 -1.0360 2.8479 26 14 8.4860 -2.5273 5.1696 27 1 8.3127 -4.0014 5.1242 28 1 9.9304 -2.1960 5.0739 29 1 7.9414 -2.0041 6.4482 30 6 2.0398 -0.7205 1.2503 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3633 0.5142 -0.8898 34 1 1.6573 -0.2210 -2.1397 35 1 1.6979 -1.7558 -1.2386 36 1 3.9143 0.3408 -1.3673 37 1 3.9439 -1.2832 -2.0983 38 1 6.1609 -2.5870 -4.4110 39 1 6.0126 -4.9947 0.2509 40 1 7.6407 -4.2752 0.1828 41 1 7.8684 -6.6261 -0.3701 42 1 6.5372 -6.5324 -1.5472 43 1 9.1074 -4.9094 -1.7817 44 1 8.8630 -6.4849 -2.5749 45 1 7.0111 -5.6315 -3.8792 46 1 8.3226 -4.4319 -4.0187 47 1 3.5922 -1.2135 3.3545 48 1 3.8640 -2.5838 2.2514 49 1 6.0148 -0.8249 1.9091 50 1 9.1877 -0.9150 2.9349 51 1 1.6572 -0.2203 2.1399 52 1 1.6973 -1.7553 1.2389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691382458.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:37 Heat of formation + Delta-G solvation = 75.101006 kcal Electronic energy + Delta-G solvation = -32994.288523 eV Core-core repulsion = 28996.417029 eV Total energy + Delta-G solvation = -3997.871494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.28718 -39.84544 -37.16133 -36.67113 -34.43975 -33.57013 -32.70445 -31.99965 -30.43362 -29.72219 -28.48627 -27.51826 -25.39002 -24.44431 -23.50426 -22.75180 -22.47694 -21.67192 -21.15435 -19.88786 -19.22644 -18.62399 -17.10744 -16.51152 -15.97636 -15.69982 -15.35059 -14.86084 -14.54020 -14.39860 -14.22910 -14.07815 -13.95292 -13.91897 -13.63634 -13.50327 -13.26610 -13.08711 -12.94497 -12.79915 -12.60139 -12.11559 -11.90644 -11.79617 -11.58368 -11.45474 -11.16171 -11.12501 -10.96876 -10.94021 -10.75699 -10.70321 -10.69879 -10.46616 -10.23643 -9.86122 -9.51056 -9.44151 -9.12556 -8.77784 -8.48341 -8.10522 -7.93031 -6.51286 -5.56550 -2.76223 1.83857 2.75925 2.91849 3.51550 3.55687 3.56892 3.64708 3.99346 4.48642 4.58379 4.65570 4.68071 4.72878 4.83238 4.91946 4.97500 5.05564 5.27659 5.33401 5.35957 5.40949 5.44989 5.58926 5.62218 5.66306 5.70733 5.71116 5.75335 5.77956 5.83348 5.84427 5.88568 5.89085 5.92305 6.09053 6.10339 6.20770 6.21597 6.22419 6.31446 6.33706 6.51529 6.61355 6.65665 6.75061 6.89761 7.07813 7.25047 7.43566 7.84760 7.95039 8.16087 8.60865 8.91531 9.71834 10.32804 10.67331 11.66779 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006578 B = 0.006189 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4255.629953 B = 4523.190086 C = 8114.527462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.125 4.125 5 C 0.077 3.923 6 N -0.592 5.592 7 C 0.560 3.440 8 O -0.447 6.447 9 C 0.175 3.825 10 N -0.459 5.459 11 C -0.031 4.031 12 C -0.016 4.016 13 N -0.404 5.404 14 C 0.104 3.896 15 C -0.134 4.134 16 C -0.128 4.128 17 C -0.044 4.044 18 C 0.144 3.856 19 H 0.070 0.930 20 C 0.159 3.841 21 N -0.695 5.695 22 C -0.206 4.206 23 H 0.065 0.935 24 C -0.022 4.022 25 N -0.937 5.937 26 Si 0.900 3.100 27 H -0.290 1.290 28 H -0.294 1.294 29 H -0.289 1.289 30 C -0.119 4.119 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.143 0.857 38 H 0.170 0.830 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.016 0.984 48 H 0.042 0.958 49 H 0.380 0.620 50 H 0.250 0.750 51 H 0.072 0.928 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 -5.684 -14.921 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.163 4.163 5 C -0.046 4.046 6 N -0.328 5.328 7 C 0.343 3.657 8 O -0.314 6.314 9 C -0.085 4.085 10 N -0.181 5.181 11 C -0.183 4.183 12 C -0.135 4.135 13 N -0.084 5.084 14 C -0.017 4.017 15 C -0.172 4.172 16 C -0.165 4.165 17 C -0.082 4.082 18 C 0.041 3.959 19 H 0.088 0.912 20 C 0.031 3.969 21 N -0.338 5.338 22 C -0.338 4.338 23 H 0.083 0.917 24 C -0.216 4.216 25 N -0.588 5.588 26 Si 0.732 3.268 27 H -0.217 1.217 28 H -0.220 1.220 29 H -0.216 1.216 30 C -0.158 4.158 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.159 0.841 38 H 0.188 0.812 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.034 0.966 48 H 0.059 0.941 49 H 0.213 0.787 50 H 0.060 0.940 51 H 0.091 0.909 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.234 -5.508 -14.075 17.712 hybrid contribution 1.288 -0.725 0.638 1.610 sum -7.946 -6.233 -13.437 16.809 Atomic orbital electron populations 1.21814 0.95516 1.01527 1.01287 1.21154 0.95155 0.99680 0.95271 0.91205 1.21969 0.96478 1.00558 0.97337 1.22636 0.92720 1.00668 0.88560 1.47358 1.43294 1.35286 1.06897 1.16604 0.80945 0.83204 0.84981 1.91212 1.59129 1.52862 1.28188 1.22993 0.99754 0.90172 0.95627 1.70038 1.22324 1.27352 0.98379 1.21960 1.01539 0.95162 0.99606 1.21179 1.05497 1.02508 0.84322 1.44903 1.33989 1.21516 1.07971 1.22149 1.02242 0.88185 0.89130 1.21933 0.99680 0.96670 0.98870 1.21683 0.98112 1.01041 0.95697 1.20228 0.96184 0.94552 0.97215 1.21431 0.92656 0.97979 0.83851 0.91242 1.20944 0.86778 0.97160 0.91993 1.42295 1.01349 1.60415 1.29693 1.19112 0.90250 1.23615 1.00847 0.91748 1.24606 0.96423 1.01776 0.98805 1.69664 1.07370 1.45228 1.36530 0.86353 0.78970 0.78870 0.82579 1.21744 1.22034 1.21613 1.21881 0.95111 1.01123 0.97703 0.92926 0.92854 0.92968 0.91433 0.92154 0.92649 0.84072 0.81230 0.87980 0.88316 0.89373 0.91126 0.91044 0.90644 0.90128 0.89476 0.96635 0.94092 0.78667 0.94027 0.90945 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.19 37.16 0.34 -1.08 16 2 C -0.09 -1.12 2.68 -90.58 -0.24 -1.36 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.54 5.36 -26.61 -0.14 -1.68 16 5 C 0.08 1.16 6.11 -3.71 -0.02 1.14 16 6 N -0.59 -10.68 2.98 -166.73 -0.50 -11.18 16 7 C 0.56 11.53 7.01 -12.53 -0.09 11.45 16 8 O -0.45 -10.55 9.13 5.27 0.05 -10.51 16 9 C 0.18 3.30 7.54 -154.86 -1.17 2.13 16 10 N -0.46 -7.79 7.66 -11.44 -0.09 -7.88 16 11 C -0.03 -0.45 11.82 -18.08 -0.21 -0.66 16 12 C -0.02 -0.22 6.57 -82.06 -0.54 -0.76 16 13 N -0.40 -6.78 3.14 -110.07 -0.35 -7.12 16 14 C 0.10 1.65 6.04 -3.92 -0.02 1.62 16 15 C -0.13 -1.49 5.93 -26.51 -0.16 -1.65 16 16 C -0.13 -1.27 5.96 -26.41 -0.16 -1.43 16 17 C -0.04 -0.43 6.31 -27.61 -0.17 -0.60 16 18 C 0.14 2.57 2.92 -67.82 -0.20 2.38 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.16 3.46 4.86 -4.04 -0.02 3.44 16 21 N -0.69 -18.53 3.21 -59.91 -0.19 -18.73 16 22 C -0.21 -6.01 9.71 -15.06 -0.15 -6.16 16 23 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 25 N -0.94 -29.51 13.06 55.49 0.72 -28.78 16 26 Si 0.90 23.32 29.55 -169.99 -5.02 18.30 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 30 C -0.12 -1.67 4.62 -26.83 -0.12 -1.79 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.14 2.23 4.11 -63.38 -0.26 1.97 16 38 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.10 1.72 7.43 -51.93 -0.39 1.33 16 40 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 47 H 0.02 0.34 8.13 -51.93 -0.42 -0.08 16 48 H 0.04 0.96 6.35 -51.93 -0.33 0.63 16 49 H 0.38 10.98 6.99 -40.82 -0.29 10.70 16 50 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 51 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -33.96 393.76 -11.45 -45.40 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.84 Total: 10.33 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -3.17 Total: 4.23 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -0.40 Total: -73.69 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.05 Total: -10.51 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.96 -11.45 -45.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691382458.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.505 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds