Wall clock time and date at job start Wed Apr 1 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47235 * 2 1 4 4 C 1.50694 * 109.47192 * 239.99258 * 2 1 3 5 5 O 1.21280 * 120.00170 * 240.00334 * 4 2 1 6 6 N 1.34781 * 119.99924 * 60.00284 * 4 2 1 7 7 C 1.46495 * 119.99799 * 359.97438 * 6 4 2 8 8 C 1.46498 * 119.99773 * 180.02562 * 6 4 2 9 9 C 1.52994 * 109.47212 * 269.99544 * 8 6 4 10 10 N 1.46897 * 109.47643 * 180.02562 * 9 8 6 11 11 C 1.46898 * 111.00639 * 170.00553 * 10 9 8 12 12 C 1.53232 * 109.34077 * 172.74773 * 11 10 9 13 13 N 1.47078 * 108.52568 * 53.82710 * 12 11 10 14 14 C 1.36943 * 120.88200 * 128.79038 * 13 12 11 15 15 H 1.07999 * 119.99657 * 206.58893 * 14 13 12 16 16 C 1.38807 * 119.99782 * 26.59378 * 14 13 12 17 17 N 1.31618 * 120.00188 * 17.00985 * 16 14 13 18 18 Si 1.86799 * 119.99686 * 197.00832 * 16 14 13 19 19 H 1.48496 * 109.47164 * 60.00292 * 18 16 14 20 20 H 1.48510 * 109.47314 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47403 * 299.99703 * 18 16 14 22 22 C 1.47074 * 118.23475 * 308.81659 * 13 12 11 23 23 C 1.46902 * 110.99959 * 45.69494 * 10 9 8 24 24 C 1.50708 * 109.46859 * 119.99544 * 2 1 3 25 25 C 1.38673 * 120.41315 * 239.99993 * 24 2 1 26 26 C 1.38634 * 118.41354 * 180.02562 * 25 24 2 27 27 C 1.38222 * 119.16701 * 359.97438 * 26 25 24 28 28 N 1.31859 * 120.76116 * 0.02562 * 27 26 25 29 29 C 1.31890 * 121.72364 * 359.70234 * 28 27 26 30 30 H 1.09000 * 109.47750 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47351 * 300.00339 * 1 2 3 32 32 H 1.09004 * 109.47250 * 60.00453 * 1 2 3 33 33 H 1.08999 * 109.47609 * 269.99874 * 7 6 4 34 34 H 1.09001 * 109.46967 * 30.00913 * 7 6 4 35 35 H 1.09005 * 109.47070 * 149.99868 * 7 6 4 36 36 H 1.09000 * 109.47053 * 150.00002 * 8 6 4 37 37 H 1.09000 * 109.47634 * 29.99827 * 8 6 4 38 38 H 1.09004 * 109.47176 * 60.00076 * 9 8 6 39 39 H 1.09005 * 109.47474 * 300.00797 * 9 8 6 40 40 H 1.08998 * 109.49451 * 52.78086 * 11 10 9 41 41 H 1.09003 * 109.48501 * 292.70700 * 11 10 9 42 42 H 1.09004 * 109.62738 * 173.54003 * 12 11 10 43 43 H 1.09000 * 109.62796 * 293.91651 * 12 11 10 44 44 H 0.97006 * 119.99914 * 179.97438 * 17 16 14 45 45 H 1.09005 * 109.63035 * 170.89298 * 22 13 12 46 46 H 1.08997 * 109.62936 * 291.47090 * 22 13 12 47 47 H 1.09000 * 109.48602 * 67.29911 * 23 10 9 48 48 H 1.09001 * 109.51744 * 307.23201 * 23 10 9 49 49 H 1.07995 * 120.79384 * 359.97438 * 25 24 2 50 50 H 1.08006 * 120.41284 * 180.02562 * 26 25 24 51 51 H 1.07992 * 119.62183 * 179.97438 * 27 26 25 52 52 H 1.08006 * 119.61599 * 180.30784 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7295 -1.6966 -1.1189 6 7 1.7067 -0.2502 -2.4545 7 6 0.8641 0.9406 -2.5890 8 6 2.1946 -0.9413 -3.6505 9 6 3.5425 -0.3495 -4.0673 10 7 4.0316 -1.0420 -5.2670 11 6 5.1978 -0.3523 -5.8345 12 6 5.7855 -1.1985 -6.9688 13 7 4.7137 -1.5014 -7.9294 14 6 4.8804 -1.2610 -9.2673 15 1 4.0210 -1.0687 -9.8924 16 6 6.1538 -1.2647 -9.8197 17 7 7.1538 -1.8153 -9.1646 18 14 6.4481 -0.4880 -11.4928 19 1 6.0833 0.9506 -11.4419 20 1 7.8820 -0.6219 -11.8554 21 1 5.6134 -1.1747 -12.5112 22 6 3.4581 -2.0687 -7.4150 23 6 2.9619 -1.1883 -6.2632 24 6 2.0323 -0.7104 1.2306 25 6 2.8300 -0.0446 2.1490 26 6 3.2694 -0.7382 3.2661 27 6 2.9000 -2.0604 3.4265 28 7 2.1399 -2.6615 2.5323 29 6 1.6994 -2.0315 1.4606 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.1838 0.6424 -2.6226 34 1 1.0274 1.5994 -1.7361 35 1 1.1219 1.4662 -3.5086 36 1 1.4766 -0.8158 -4.4610 37 1 2.3154 -2.0025 -3.4332 38 1 4.2606 -0.4750 -3.2569 39 1 3.4219 0.7118 -4.2846 40 1 5.9501 -0.2111 -5.0586 41 1 4.8916 0.6180 -6.2256 42 1 6.5783 -0.6415 -7.4682 43 1 6.1897 -2.1256 -6.5623 44 1 8.0436 -1.8182 -9.5509 45 1 2.7120 -2.0871 -8.2095 46 1 3.6354 -3.0811 -7.0519 47 1 2.6870 -0.2064 -6.6483 48 1 2.0925 -1.6533 -5.7984 49 1 3.1031 0.9891 1.9972 50 1 3.8919 -0.2511 4.0022 51 1 3.2385 -2.6077 4.2937 52 1 1.0745 -2.5557 0.7525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691942634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:54 Heat of formation + Delta-G solvation = 49.143789 kcal Electronic energy + Delta-G solvation = -30616.977222 eV Core-core repulsion = 26617.980139 eV Total energy + Delta-G solvation = -3998.997083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.03229 -39.77468 -38.20686 -35.99086 -35.15744 -34.22379 -32.42433 -31.48481 -30.53290 -29.92637 -28.76617 -27.20704 -26.17560 -24.95593 -23.81429 -23.71997 -22.73311 -22.26902 -21.07315 -19.34718 -19.05862 -17.53536 -17.37393 -16.97320 -16.49600 -16.23370 -15.75281 -15.20654 -14.93487 -14.69020 -14.42725 -14.39462 -14.01923 -13.90256 -13.68509 -13.60922 -13.45200 -13.35657 -13.33996 -13.07850 -12.85396 -12.71351 -12.38872 -12.15811 -12.01822 -11.75990 -11.58244 -11.37953 -11.13612 -10.89360 -10.67976 -10.49608 -10.30869 -10.16432 -10.07479 -9.83033 -9.72162 -9.67093 -9.62121 -9.21965 -8.84122 -8.48737 -7.79692 -6.64879 -5.76276 -3.17622 0.84315 1.03523 2.40732 2.71600 3.38732 3.44499 3.45383 3.57700 4.01755 4.15733 4.36773 4.43735 4.49426 4.53330 4.60253 4.64913 4.76280 4.79754 4.91855 4.94278 5.03092 5.14745 5.23052 5.24713 5.29458 5.39833 5.40378 5.43796 5.52518 5.54631 5.64397 5.81021 5.81946 5.90428 5.94476 5.96459 6.04152 6.12655 6.25028 6.30449 6.37686 6.43613 6.54442 6.70571 6.94990 7.12679 7.26099 7.61002 7.67464 7.71810 7.75912 7.82868 7.96853 8.45105 9.22729 9.86344 10.45210 11.32510 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022740 B = 0.001965 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.991125 B =14248.360749 C =14793.404808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.065 4.065 3 H 0.105 0.895 4 C 0.515 3.485 5 O -0.521 6.521 6 N -0.614 5.614 7 C 0.074 3.926 8 C 0.112 3.888 9 C 0.045 3.955 10 N -0.529 5.529 11 C 0.038 3.962 12 C 0.178 3.822 13 N -0.595 5.595 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.148 3.852 23 C 0.037 3.963 24 C -0.119 4.119 25 C -0.069 4.069 26 C -0.176 4.176 27 C 0.096 3.904 28 N -0.485 5.485 29 C 0.135 3.865 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.059 0.941 41 H 0.024 0.976 42 H 0.088 0.912 43 H 0.027 0.973 44 H 0.254 0.746 45 H 0.055 0.945 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.065 0.935 49 H 0.133 0.867 50 H 0.134 0.866 51 H 0.154 0.846 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.861 8.692 23.610 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.087 4.087 3 H 0.123 0.877 4 C 0.302 3.698 5 O -0.396 6.396 6 N -0.348 5.348 7 C -0.070 4.070 8 C -0.010 4.010 9 C -0.085 4.085 10 N -0.254 5.254 11 C -0.091 4.091 12 C 0.052 3.948 13 N -0.319 5.319 14 C -0.382 4.382 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.021 3.979 23 C -0.093 4.093 24 C -0.121 4.121 25 C -0.095 4.095 26 C -0.196 4.196 27 C -0.060 4.060 28 N -0.194 5.194 29 C -0.023 4.023 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.150 0.850 50 H 0.152 0.848 51 H 0.172 0.828 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.378 6.777 23.847 28.659 hybrid contribution 0.348 2.316 -1.263 2.660 sum -14.030 9.093 22.584 28.099 Atomic orbital electron populations 1.22086 0.91746 1.03618 1.03736 1.20198 0.97969 1.00089 0.90466 0.87662 1.20454 0.80387 0.84805 0.84183 1.90780 1.36840 1.25885 1.86077 1.47830 1.51394 1.29523 1.06013 1.22006 0.94523 0.87205 1.03220 1.21730 0.95302 0.98422 0.85520 1.22397 0.96165 0.95370 0.94534 1.61997 1.07392 1.50423 1.05607 1.22886 0.91724 0.96274 0.98197 1.20855 0.90875 0.96330 0.86747 1.44112 1.12192 1.72155 1.03407 1.19143 0.92663 1.41958 0.84422 0.91701 1.25034 0.97050 0.99857 0.97865 1.70025 1.00599 1.45185 1.38939 0.86361 0.76898 0.79427 0.84017 1.21167 1.21620 1.20894 1.20980 0.89654 0.94347 0.92882 1.22755 0.93273 0.99318 0.93905 1.20307 0.99767 0.96059 0.96001 1.21449 0.94636 1.00129 0.93267 1.22091 1.02037 0.96365 0.99062 1.22794 0.93615 0.92274 0.97366 1.67730 1.10473 1.38354 1.02793 1.22505 0.95682 0.90768 0.93310 0.91672 0.91204 0.90304 0.91914 0.90854 0.90834 0.90014 0.88777 0.91052 0.95715 0.92214 0.95754 0.89345 0.95480 0.93553 0.92656 0.95587 0.95522 0.91656 0.84952 0.84768 0.82844 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.64 37.16 0.32 -0.51 16 2 C -0.07 -0.50 2.11 -92.92 -0.20 -0.70 16 3 H 0.11 0.60 7.19 -51.93 -0.37 0.23 16 4 C 0.51 5.85 6.96 -10.99 -0.08 5.77 16 5 O -0.52 -8.31 14.72 5.56 0.08 -8.22 16 6 N -0.61 -6.15 2.87 -181.58 -0.52 -6.67 16 7 C 0.07 0.44 8.80 59.84 0.53 0.97 16 8 C 0.11 1.41 4.66 -4.05 -0.02 1.39 16 9 C 0.04 0.67 5.59 -3.83 -0.02 0.65 16 10 N -0.53 -9.73 4.78 -234.33 -1.12 -10.85 16 11 C 0.04 0.78 5.58 -3.71 -0.02 0.76 16 12 C 0.18 4.42 5.42 -3.61 -0.02 4.40 16 13 N -0.60 -15.35 3.04 -172.02 -0.52 -15.87 16 14 C -0.25 -7.01 9.63 -15.06 -0.15 -7.16 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 16 C 0.00 0.01 4.94 -17.43 -0.09 -0.07 16 17 N -0.90 -26.61 11.15 55.49 0.62 -25.99 16 18 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.15 3.19 6.69 -3.61 -0.02 3.17 16 23 C 0.04 0.65 5.04 -3.70 -0.02 0.64 16 24 C -0.12 -1.14 4.40 -104.48 -0.46 -1.60 16 25 C -0.07 -0.56 9.81 -39.27 -0.39 -0.95 16 26 C -0.18 -1.38 10.11 -39.44 -0.40 -1.78 16 27 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 28 N -0.49 -5.86 10.36 -13.25 -0.14 -6.00 16 29 C 0.13 1.53 9.13 -17.55 -0.16 1.37 16 30 H 0.06 0.41 7.40 -51.93 -0.38 0.02 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.31 4.53 -51.93 -0.24 0.08 16 33 H 0.06 0.28 6.95 -51.93 -0.36 -0.08 16 34 H 0.07 0.30 6.01 -51.93 -0.31 -0.01 16 35 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 36 H 0.08 0.91 6.11 -51.93 -0.32 0.60 16 37 H 0.09 1.40 7.42 -51.93 -0.39 1.01 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 40 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.97 5.73 -51.93 -0.30 0.67 16 49 H 0.13 0.74 8.00 -52.49 -0.42 0.32 16 50 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 51 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 52 H 0.15 1.66 7.53 -52.48 -0.40 1.27 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -34.86 402.89 -10.34 -45.20 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.40 Total: -1.50 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.38 Total: 7.04 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -1.68 Total: -65.38 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.86 -10.34 -45.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691942634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.343 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds