Wall clock time and date at job start Wed Apr 1 2020 05:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47235 * 2 1 4 4 C 1.50694 * 109.47192 * 239.99258 * 2 1 3 5 5 O 1.21280 * 120.00170 * 240.00334 * 4 2 1 6 6 N 1.34781 * 119.99924 * 60.00284 * 4 2 1 7 7 C 1.46495 * 119.99799 * 359.97438 * 6 4 2 8 8 C 1.46498 * 119.99773 * 180.02562 * 6 4 2 9 9 C 1.52994 * 109.47212 * 269.99544 * 8 6 4 10 10 N 1.46897 * 109.47643 * 180.02562 * 9 8 6 11 11 C 1.46898 * 111.00639 * 170.00553 * 10 9 8 12 12 C 1.53232 * 109.34077 * 172.74773 * 11 10 9 13 13 N 1.47078 * 108.52568 * 53.82710 * 12 11 10 14 14 C 1.36943 * 120.88200 * 128.79038 * 13 12 11 15 15 H 1.07999 * 119.99657 * 206.58893 * 14 13 12 16 16 C 1.38807 * 119.99782 * 26.59378 * 14 13 12 17 17 N 1.31618 * 120.00188 * 17.00985 * 16 14 13 18 18 Si 1.86799 * 119.99686 * 197.00832 * 16 14 13 19 19 H 1.48496 * 109.47164 * 60.00292 * 18 16 14 20 20 H 1.48510 * 109.47314 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47403 * 299.99703 * 18 16 14 22 22 C 1.47074 * 118.23475 * 308.81659 * 13 12 11 23 23 C 1.46902 * 110.99959 * 45.69494 * 10 9 8 24 24 C 1.50708 * 109.46859 * 119.99544 * 2 1 3 25 25 C 1.38673 * 120.41315 * 239.99993 * 24 2 1 26 26 C 1.38634 * 118.41354 * 180.02562 * 25 24 2 27 27 C 1.38222 * 119.16701 * 359.97438 * 26 25 24 28 28 N 1.31859 * 120.76116 * 0.02562 * 27 26 25 29 29 C 1.31890 * 121.72364 * 359.70234 * 28 27 26 30 30 H 1.09000 * 109.47750 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47351 * 300.00339 * 1 2 3 32 32 H 1.09004 * 109.47250 * 60.00453 * 1 2 3 33 33 H 1.08999 * 109.47609 * 269.99874 * 7 6 4 34 34 H 1.09001 * 109.46967 * 30.00913 * 7 6 4 35 35 H 1.09005 * 109.47070 * 149.99868 * 7 6 4 36 36 H 1.09000 * 109.47053 * 150.00002 * 8 6 4 37 37 H 1.09000 * 109.47634 * 29.99827 * 8 6 4 38 38 H 1.09004 * 109.47176 * 60.00076 * 9 8 6 39 39 H 1.09005 * 109.47474 * 300.00797 * 9 8 6 40 40 H 1.08998 * 109.49451 * 52.78086 * 11 10 9 41 41 H 1.09003 * 109.48501 * 292.70700 * 11 10 9 42 42 H 1.09004 * 109.62738 * 173.54003 * 12 11 10 43 43 H 1.09000 * 109.62796 * 293.91651 * 12 11 10 44 44 H 0.97006 * 119.99914 * 179.97438 * 17 16 14 45 45 H 1.09005 * 109.63035 * 170.89298 * 22 13 12 46 46 H 1.08997 * 109.62936 * 291.47090 * 22 13 12 47 47 H 1.09000 * 109.48602 * 67.29911 * 23 10 9 48 48 H 1.09001 * 109.51744 * 307.23201 * 23 10 9 49 49 H 1.07995 * 120.79384 * 359.97438 * 25 24 2 50 50 H 1.08006 * 120.41284 * 180.02562 * 26 25 24 51 51 H 1.07992 * 119.62183 * 179.97438 * 27 26 25 52 52 H 1.08006 * 119.61599 * 180.30784 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7295 -1.6966 -1.1189 6 7 1.7067 -0.2502 -2.4545 7 6 0.8641 0.9406 -2.5890 8 6 2.1946 -0.9413 -3.6505 9 6 3.5425 -0.3495 -4.0673 10 7 4.0316 -1.0420 -5.2670 11 6 5.1978 -0.3523 -5.8345 12 6 5.7855 -1.1985 -6.9688 13 7 4.7137 -1.5014 -7.9294 14 6 4.8804 -1.2610 -9.2673 15 1 4.0210 -1.0687 -9.8924 16 6 6.1538 -1.2647 -9.8197 17 7 7.1538 -1.8153 -9.1646 18 14 6.4481 -0.4880 -11.4928 19 1 6.0833 0.9506 -11.4419 20 1 7.8820 -0.6219 -11.8554 21 1 5.6134 -1.1747 -12.5112 22 6 3.4581 -2.0687 -7.4150 23 6 2.9619 -1.1883 -6.2632 24 6 2.0323 -0.7104 1.2306 25 6 2.8300 -0.0446 2.1490 26 6 3.2694 -0.7382 3.2661 27 6 2.9000 -2.0604 3.4265 28 7 2.1399 -2.6615 2.5323 29 6 1.6994 -2.0315 1.4606 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.1838 0.6424 -2.6226 34 1 1.0274 1.5994 -1.7361 35 1 1.1219 1.4662 -3.5086 36 1 1.4766 -0.8158 -4.4610 37 1 2.3154 -2.0025 -3.4332 38 1 4.2606 -0.4750 -3.2569 39 1 3.4219 0.7118 -4.2846 40 1 5.9501 -0.2111 -5.0586 41 1 4.8916 0.6180 -6.2256 42 1 6.5783 -0.6415 -7.4682 43 1 6.1897 -2.1256 -6.5623 44 1 8.0436 -1.8182 -9.5509 45 1 2.7120 -2.0871 -8.2095 46 1 3.6354 -3.0811 -7.0519 47 1 2.6870 -0.2064 -6.6483 48 1 2.0925 -1.6533 -5.7984 49 1 3.1031 0.9891 1.9972 50 1 3.8919 -0.2511 4.0022 51 1 3.2385 -2.6077 4.2937 52 1 1.0745 -2.5557 0.7525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691942634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:52 Heat of formation + Delta-G solvation = 25.292345 kcal Electronic energy + Delta-G solvation = -30618.011498 eV Core-core repulsion = 26617.980139 eV Total energy + Delta-G solvation = -4000.031360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.77559 -40.59462 -39.71601 -37.11953 -36.16598 -35.49921 -33.38966 -33.04070 -31.96594 -31.03097 -29.94834 -28.10914 -27.49933 -25.75867 -25.24019 -24.48398 -24.24081 -23.53297 -22.22515 -20.80622 -20.13028 -18.77429 -18.24176 -18.04339 -17.58849 -17.01791 -16.95130 -16.49787 -16.17003 -15.91054 -15.68621 -15.41493 -15.26741 -15.16825 -14.92510 -14.86098 -14.67501 -14.29774 -14.23589 -13.94568 -13.84245 -13.56928 -13.35464 -13.12134 -13.09309 -13.01551 -12.79050 -12.58729 -12.44585 -12.37139 -12.15179 -12.09471 -12.06813 -11.92476 -11.53817 -11.44662 -10.89281 -10.62332 -10.58111 -10.37881 -9.90092 -9.70010 -9.27866 -8.70217 -7.88294 -5.33799 0.16856 0.37780 1.46300 1.48817 1.55968 1.58973 1.93007 2.50333 2.87158 3.05293 3.27042 3.39658 3.54465 3.65118 3.71125 3.86951 3.97027 4.03509 4.05381 4.12476 4.21002 4.24121 4.30707 4.34134 4.40322 4.41088 4.54256 4.56357 4.64036 4.67148 4.69931 4.77902 4.81828 4.84820 4.88066 4.90050 4.93686 5.00307 5.02562 5.16510 5.19787 5.23613 5.33624 5.36085 5.47604 5.59836 5.64560 5.79528 6.13381 6.22490 6.35733 6.38028 7.05344 7.11219 7.15647 7.81928 8.37178 9.18728 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022740 B = 0.001965 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.991125 B =14248.360749 C =14793.404808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 H 0.136 0.864 4 C 0.509 3.491 5 O -0.578 6.578 6 N -0.610 5.610 7 C 0.063 3.937 8 C 0.121 3.879 9 C 0.056 3.944 10 N -0.547 5.547 11 C 0.055 3.945 12 C 0.186 3.814 13 N -0.614 5.614 14 C -0.264 4.264 15 H 0.072 0.928 16 C -0.056 4.056 17 N -0.939 5.939 18 Si 0.972 3.028 19 H -0.276 1.276 20 H -0.295 1.295 21 H -0.274 1.274 22 C 0.141 3.859 23 C 0.051 3.949 24 C -0.127 4.127 25 C -0.073 4.073 26 C -0.171 4.171 27 C 0.078 3.922 28 N -0.523 5.523 29 C 0.109 3.891 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.027 0.973 42 H 0.059 0.941 43 H -0.008 1.008 44 H 0.250 0.750 45 H 0.066 0.934 46 H 0.010 0.990 47 H 0.033 0.967 48 H 0.100 0.900 49 H 0.165 0.835 50 H 0.167 0.833 51 H 0.174 0.826 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 11.940 24.455 32.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 H 0.154 0.846 4 C 0.298 3.702 5 O -0.457 6.457 6 N -0.342 5.342 7 C -0.078 4.078 8 C -0.003 4.003 9 C -0.073 4.073 10 N -0.273 5.273 11 C -0.074 4.074 12 C 0.060 3.940 13 N -0.338 5.338 14 C -0.394 4.394 15 H 0.089 0.911 16 C -0.251 4.251 17 N -0.585 5.585 18 Si 0.800 3.200 19 H -0.202 1.202 20 H -0.222 1.222 21 H -0.200 1.200 22 C 0.015 3.985 23 C -0.078 4.078 24 C -0.129 4.129 25 C -0.099 4.099 26 C -0.190 4.190 27 C -0.079 4.079 28 N -0.232 5.232 29 C -0.047 4.047 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.010 0.990 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.028 0.972 47 H 0.051 0.949 48 H 0.118 0.882 49 H 0.182 0.818 50 H 0.184 0.816 51 H 0.191 0.809 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.492 10.061 24.701 31.358 hybrid contribution 0.968 1.244 -1.465 2.152 sum -15.524 11.305 23.236 30.144 Atomic orbital electron populations 1.22100 0.89860 1.03246 1.05500 1.20256 0.99357 1.00555 0.87577 0.84621 1.21163 0.79422 0.84188 0.85430 1.90762 1.39522 1.28468 1.86919 1.47898 1.51220 1.30351 1.04756 1.22363 0.94843 0.85864 1.04722 1.21478 0.94554 0.97033 0.87208 1.22305 0.96888 0.96022 0.92106 1.61867 1.07403 1.51281 1.06701 1.22526 0.92883 0.95154 0.96826 1.20588 0.90607 0.95015 0.87821 1.44408 1.13452 1.72750 1.03173 1.19532 0.92996 1.41305 0.85528 0.91071 1.25872 0.96858 1.00604 1.01720 1.70205 1.00751 1.46772 1.40739 0.85267 0.76320 0.78730 0.79676 1.20215 1.22162 1.19964 1.21171 0.88332 0.94287 0.94664 1.22598 0.93737 0.98937 0.92511 1.20525 0.99875 0.95475 0.97015 1.21898 0.93663 1.01579 0.92783 1.22474 1.01373 0.95683 0.99516 1.23252 0.93497 0.93531 0.97593 1.67648 1.11944 1.39784 1.03810 1.22462 0.96793 0.92010 0.93484 0.93209 0.89612 0.88273 0.89832 0.88298 0.90324 0.87972 0.91616 0.92830 0.94037 0.91101 0.95517 0.92303 0.98954 0.94087 0.91603 0.97178 0.94894 0.88222 0.81786 0.81588 0.80899 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.64 71.98 0.62 -0.57 16 2 C -0.06 -0.73 2.11 -12.29 -0.03 -0.75 16 3 H 0.14 0.93 7.19 -2.39 -0.02 0.91 16 4 C 0.51 10.96 6.96 87.65 0.61 11.57 16 5 O -0.58 -18.92 14.72 -3.03 -0.04 -18.96 16 6 N -0.61 -10.74 2.87 -846.79 -2.43 -13.17 16 7 C 0.06 0.48 8.80 127.77 1.12 1.60 16 8 C 0.12 2.80 4.66 86.38 0.40 3.20 16 9 C 0.06 1.57 5.59 86.30 0.48 2.05 16 10 N -0.55 -19.68 4.78 -895.28 -4.28 -23.96 16 11 C 0.06 2.25 5.58 86.38 0.48 2.73 16 12 C 0.19 9.57 5.42 86.35 0.47 10.03 16 13 N -0.61 -32.14 3.04 -698.16 -2.12 -34.26 16 14 C -0.26 -14.77 9.63 84.03 0.81 -13.96 16 15 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 16 C -0.06 -3.16 4.94 84.86 0.42 -2.74 16 17 N -0.94 -57.16 11.15 21.65 0.24 -56.92 16 18 Si 0.97 45.27 29.59 68.60 2.03 47.30 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.14 6.05 6.69 86.35 0.58 6.63 16 23 C 0.05 1.71 5.04 86.38 0.44 2.15 16 24 C -0.13 -2.28 4.40 -19.77 -0.09 -2.37 16 25 C -0.07 -1.03 9.81 22.47 0.22 -0.81 16 26 C -0.17 -2.34 10.11 22.36 0.23 -2.12 16 27 C 0.08 1.42 11.18 84.68 0.95 2.37 16 28 N -0.52 -13.14 10.36 -195.85 -2.03 -15.17 16 29 C 0.11 2.59 9.13 84.67 0.77 3.36 16 30 H 0.05 0.57 7.40 -2.39 -0.02 0.55 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.37 4.53 -2.38 -0.01 0.35 16 33 H 0.08 0.34 6.95 -2.39 -0.02 0.33 16 34 H 0.10 0.28 6.01 -2.39 -0.01 0.26 16 35 H 0.08 0.58 8.07 -2.38 -0.02 0.56 16 36 H 0.10 1.94 6.11 -2.39 -0.01 1.93 16 37 H 0.07 1.94 7.42 -2.39 -0.02 1.92 16 38 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.04 1.06 8.08 -2.38 -0.02 1.04 16 40 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 3.35 6.12 -2.38 -0.01 3.33 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 45 H 0.07 2.64 7.95 -2.38 -0.02 2.62 16 46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.10 2.68 5.73 -2.39 -0.01 2.67 16 49 H 0.16 1.15 8.00 -2.91 -0.02 1.13 16 50 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 51 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 52 H 0.14 3.34 7.53 -2.91 -0.02 3.32 16 Total: -1.00 -81.03 402.89 0.76 -80.28 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.90 Total: 12.47 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 8.49 Total: 22.40 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -10.62 Total: -143.48 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.04 Total: -18.96 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -81.03 0.76 -80.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691942634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.569 kcal (2) G-P(sol) polarization free energy of solvation -81.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds