Wall clock time and date at job start Wed Apr 1 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.29402 * 2 1 4 4 C 1.54010 * 110.32875 * 122.13743 * 2 1 3 5 5 N 1.47479 * 107.08409 * 120.19564 * 4 2 1 6 6 C 1.34781 * 127.03235 * 154.51919 * 5 4 2 7 7 O 1.21627 * 120.00086 * 185.29710 * 6 5 4 8 8 C 1.47170 * 119.99790 * 5.29270 * 6 5 4 9 9 C 1.38405 * 126.87982 * 92.19965 * 8 6 5 10 10 C 1.50697 * 127.32240 * 0.24421 * 9 8 6 11 11 C 1.53780 * 113.61484 * 217.49485 * 10 9 8 12 12 C 1.53785 * 87.08305 * 220.01932 * 11 10 9 13 13 C 1.53781 * 87.07976 * 25.42890 * 12 11 10 14 14 C 1.39672 * 105.35623 * 180.25767 * 9 8 6 15 15 N 1.30869 * 107.86492 * 0.02562 * 14 9 8 16 16 N 1.28447 * 110.92259 * 359.97438 * 15 14 9 17 17 C 1.46498 * 125.18544 * 179.97438 * 16 15 14 18 18 C 1.48114 * 105.93727 * 334.77700 * 5 4 2 19 19 C 1.54601 * 103.42022 * 39.02465 * 18 5 4 20 20 H 1.08998 * 110.57105 * 81.17137 * 19 18 5 21 21 C 1.52996 * 110.98755 * 204.37322 * 19 18 5 22 22 N 1.46496 * 109.47522 * 288.64919 * 21 19 18 23 23 C 1.36936 * 120.00532 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99848 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00411 * 180.02562 * 23 22 21 26 26 N 1.31609 * 120.00216 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99747 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47249 * 90.00484 * 27 25 23 29 29 H 1.48501 * 109.47159 * 210.00335 * 27 25 23 30 30 H 1.48502 * 109.47659 * 330.00184 * 27 25 23 31 31 H 1.08998 * 109.47144 * 299.31668 * 1 2 3 32 32 H 1.08997 * 109.47121 * 59.31942 * 1 2 3 33 33 H 1.09004 * 109.47152 * 179.32353 * 1 2 3 34 34 H 1.09004 * 109.91075 * 0.83257 * 4 2 1 35 35 H 1.09000 * 110.06764 * 239.64667 * 4 2 1 36 36 H 1.09001 * 112.84788 * 348.80117 * 10 9 8 37 37 H 1.09003 * 113.61333 * 334.56255 * 11 10 9 38 38 H 1.08991 * 113.61642 * 105.46772 * 11 10 9 39 39 H 1.09004 * 113.60973 * 270.88362 * 12 11 10 40 40 H 1.08993 * 113.69263 * 139.98933 * 12 11 10 41 41 H 1.09002 * 113.61508 * 220.01647 * 13 12 11 42 42 H 1.09005 * 113.61375 * 89.11893 * 13 12 11 43 43 H 1.08001 * 126.07074 * 179.97438 * 14 9 8 44 44 H 1.09005 * 109.47100 * 274.81460 * 17 16 15 45 45 H 1.08993 * 109.47498 * 34.81456 * 17 16 15 46 46 H 1.09001 * 109.46931 * 154.82056 * 17 16 15 47 47 H 1.08993 * 110.66565 * 157.50523 * 18 5 4 48 48 H 1.08996 * 110.66183 * 280.62951 * 18 5 4 49 49 H 1.08995 * 109.47287 * 48.65449 * 21 19 18 50 50 H 1.09010 * 109.46907 * 168.65499 * 21 19 18 51 51 H 0.97000 * 119.99883 * 0.02562 * 22 21 19 52 52 H 0.97001 * 120.00014 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2229 5 7 2.8804 -1.8851 0.7102 6 6 3.8923 -2.5095 1.3448 7 8 4.5443 -3.3561 0.7637 8 6 4.2084 -2.1669 2.7407 9 6 3.7170 -2.7824 3.8788 10 6 2.7556 -3.9407 3.9483 11 6 1.7477 -3.8362 5.1050 12 6 1.9436 -5.3479 5.3083 13 6 3.3290 -5.1754 4.6636 14 6 4.3015 -2.1016 4.9492 15 7 5.0708 -1.1644 4.4568 16 7 5.0407 -1.1737 3.1728 17 6 5.7848 -0.2581 2.3043 18 6 2.3640 -2.1760 -0.6472 19 6 2.0671 -0.7736 -1.2263 20 1 2.9805 -0.3136 -1.6032 21 6 1.0067 -0.8484 -2.3267 22 7 1.5817 -1.4799 -3.5169 23 6 0.8143 -1.6554 -4.6374 24 1 -0.2148 -1.3279 -4.6438 25 6 1.3590 -2.2543 -5.7650 26 7 0.6215 -2.4224 -6.8420 27 14 3.1391 -2.8202 -5.7542 28 1 3.2090 -4.2254 -5.2790 29 1 3.6941 -2.7344 -7.1289 30 1 3.9296 -1.9507 -4.8462 31 1 -0.3633 0.5032 0.8960 32 1 -0.3633 0.5243 -0.8838 33 1 -0.3634 -1.0276 -0.0121 34 1 1.2331 -1.1554 1.8112 35 1 2.6801 -0.1111 1.8376 36 1 2.2961 -4.1677 2.9862 37 1 2.1033 -3.2336 5.9409 38 1 0.7418 -3.5654 4.7846 39 1 1.2608 -5.9598 4.7187 40 1 1.9835 -5.6474 6.3555 41 1 3.5996 -5.9858 3.9868 42 1 4.1170 -4.9389 5.3787 43 1 4.1456 -2.3109 5.9972 44 1 5.2144 0.6614 2.1720 45 1 6.7472 -0.0262 2.7603 46 1 5.9461 -0.7282 1.3341 47 1 3.1194 -2.6859 -1.2450 48 1 1.4508 -2.7684 -0.5925 49 1 0.1599 -1.4381 -1.9757 50 1 0.6702 0.1580 -2.5761 51 1 2.5061 -1.7738 -3.5114 52 1 1.0023 -2.8406 -7.6301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699959351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:45 Heat of formation + Delta-G solvation = 82.231105 kcal Electronic energy + Delta-G solvation = -31524.312736 eV Core-core repulsion = 27526.750427 eV Total energy + Delta-G solvation = -3997.562310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.81647 -40.16028 -38.83686 -38.12483 -34.93130 -33.61150 -33.08471 -31.45650 -31.35656 -29.44679 -27.83366 -26.76912 -25.90616 -25.79872 -25.38085 -23.64101 -22.13229 -21.70308 -21.55005 -19.44813 -19.34159 -19.29896 -18.08103 -17.31672 -16.73189 -16.14445 -15.99370 -15.78302 -15.58931 -15.15869 -14.71231 -14.69560 -14.29041 -13.91368 -13.79836 -13.36373 -13.23310 -13.08211 -12.96882 -12.81489 -12.66741 -12.63046 -12.52479 -12.47062 -12.39052 -12.03104 -11.87373 -11.31597 -11.15626 -10.95025 -10.83592 -10.71578 -10.64541 -10.59958 -10.55001 -10.40812 -10.25126 -10.09771 -9.61399 -9.39169 -8.94260 -8.89104 -8.85501 -7.26862 -5.79353 -3.15458 1.42420 1.86416 2.38869 2.49302 2.84537 3.37242 3.40881 3.45834 4.06222 4.14437 4.37757 4.41724 4.49710 4.54924 4.57642 4.61720 4.69562 4.73294 4.76423 4.87518 5.00474 5.03957 5.07321 5.22131 5.27469 5.31298 5.36370 5.39791 5.50465 5.51871 5.52202 5.58422 5.61243 5.63753 5.68253 5.71200 5.77696 5.83706 5.93560 5.98674 6.03435 6.08634 6.13859 6.24280 6.27084 6.28762 6.47825 6.55883 6.66181 7.26795 7.80752 7.83427 7.95720 8.39417 9.17961 9.90558 10.09270 11.38920 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.002814 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.150248 B = 9947.198191 C =10095.201013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.084 0.916 4 C 0.108 3.892 5 N -0.608 5.608 6 C 0.607 3.393 7 O -0.520 6.520 8 C -0.018 4.018 9 C -0.142 4.142 10 C -0.039 4.039 11 C -0.128 4.128 12 C -0.143 4.143 13 C -0.129 4.129 14 C 0.009 3.991 15 N -0.284 5.284 16 N -0.274 5.274 17 C 0.086 3.914 18 C 0.112 3.888 19 C -0.108 4.108 20 H 0.082 0.918 21 C 0.169 3.831 22 N -0.757 5.757 23 C -0.246 4.246 24 H 0.091 0.909 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.278 1.278 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.183 0.817 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.033 0.967 51 H 0.360 0.640 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 3.448 27.765 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.102 0.898 4 C -0.015 4.015 5 N -0.342 5.342 6 C 0.391 3.609 7 O -0.394 6.394 8 C -0.146 4.146 9 C -0.152 4.152 10 C -0.058 4.058 11 C -0.166 4.166 12 C -0.180 4.180 13 C -0.167 4.167 14 C -0.168 4.168 15 N -0.115 5.115 16 N -0.062 5.062 17 C -0.054 4.054 18 C -0.009 4.009 19 C -0.127 4.127 20 H 0.100 0.900 21 C 0.042 3.958 22 N -0.403 5.403 23 C -0.375 4.375 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.200 0.800 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.053 0.947 50 H 0.051 0.949 51 H 0.193 0.807 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.616 3.926 27.528 28.368 hybrid contribution 0.857 -0.938 -0.399 1.332 sum 6.473 2.987 27.130 28.051 Atomic orbital electron populations 1.21918 0.93545 1.02712 1.02213 1.22022 0.97044 0.99198 0.93272 0.89803 1.22240 0.94657 0.87876 0.96731 1.48790 1.32777 1.34521 1.18093 1.16589 0.79529 0.81483 0.83253 1.90884 1.49792 1.32700 1.66008 1.21301 1.01758 0.96779 0.94771 1.20458 1.03443 1.01009 0.90304 1.20861 0.94362 0.91622 0.98969 1.22949 0.99046 0.96648 0.97932 1.22829 0.97486 0.96648 1.01070 1.22954 0.97019 0.97256 0.99466 1.23298 0.98518 0.95104 0.99901 1.73147 1.22805 1.23346 0.92156 1.45511 1.32785 1.23950 1.03978 1.22192 0.97299 0.92603 0.93305 1.22614 0.99830 0.97661 0.80797 1.22521 1.00517 0.94521 0.95182 0.89970 1.20694 0.93268 0.96689 0.85148 1.42764 1.11840 1.73639 1.12075 1.19022 0.95889 1.33246 0.89381 0.89161 1.24660 0.97486 1.00875 0.95934 1.69694 1.35674 1.49159 1.03581 0.86592 0.86323 0.79010 0.76845 1.20904 1.21684 1.20396 0.92832 0.91052 0.91929 0.90863 0.91621 0.88915 0.89805 0.91294 0.90099 0.91304 0.91307 0.89884 0.80010 0.89520 0.88259 0.88858 0.89454 0.89915 0.94728 0.94893 0.80710 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 7.78 37.16 0.29 -1.13 16 2 C -0.10 -0.98 3.53 -89.24 -0.32 -1.30 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.11 1.09 6.37 -2.98 -0.02 1.07 16 5 N -0.61 -7.82 3.29 -171.34 -0.56 -8.39 16 6 C 0.61 8.81 6.74 -12.63 -0.09 8.73 16 7 O -0.52 -9.56 17.30 5.25 0.09 -9.47 16 8 C -0.02 -0.22 5.77 -82.06 -0.47 -0.70 16 9 C -0.14 -1.58 5.49 -104.03 -0.57 -2.15 16 10 C -0.04 -0.38 4.12 -90.96 -0.37 -0.75 16 11 C -0.13 -0.96 7.58 -25.92 -0.20 -1.15 16 12 C -0.14 -1.02 8.08 -25.92 -0.21 -1.23 16 13 C -0.13 -1.13 7.62 -25.92 -0.20 -1.32 16 14 C 0.01 0.10 11.25 -17.43 -0.20 -0.10 16 15 N -0.28 -3.27 11.90 30.59 0.36 -2.91 16 16 N -0.27 -3.10 3.75 -63.88 -0.24 -3.34 16 17 C 0.09 0.70 11.21 59.85 0.67 1.37 16 18 C 0.11 1.63 6.46 -2.31 -0.01 1.61 16 19 C -0.11 -1.48 2.98 -88.93 -0.27 -1.75 16 20 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 21 C 0.17 2.95 4.44 -4.05 -0.02 2.93 16 22 N -0.76 -17.30 5.33 -59.91 -0.32 -17.62 16 23 C -0.25 -6.81 10.47 -15.06 -0.16 -6.96 16 24 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 27 Si 0.88 22.21 27.73 -169.99 -4.71 17.50 16 28 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.75 6.76 -51.93 -0.35 0.40 16 33 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 34 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.07 0.61 7.80 -51.93 -0.40 0.20 16 36 H 0.09 1.05 7.94 -51.93 -0.41 0.63 16 37 H 0.08 0.55 7.19 -51.93 -0.37 0.17 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 43 H 0.18 1.31 7.68 -52.49 -0.40 0.90 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.80 7.66 -51.93 -0.40 0.41 16 47 H 0.09 1.46 7.81 -51.93 -0.41 1.05 16 48 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 49 H 0.03 0.60 6.81 -51.93 -0.35 0.25 16 50 H 0.03 0.58 7.38 -51.92 -0.38 0.20 16 51 H 0.36 8.19 5.53 -40.82 -0.23 7.96 16 52 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 412.79 15.07 6.22 6.22 Total: -1.00 -34.48 412.79 -9.34 -43.82 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.73 Total: 5.34 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.23 Total: -2.75 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.02 Total: -60.65 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.48 -9.34 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699959351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.049 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds