Wall clock time and date at job start Wed Apr 1 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.29402 * 2 1 4 4 C 1.54010 * 110.32875 * 122.13743 * 2 1 3 5 5 N 1.47479 * 107.08409 * 120.19564 * 4 2 1 6 6 C 1.34781 * 127.03235 * 154.51919 * 5 4 2 7 7 O 1.21627 * 120.00086 * 185.29710 * 6 5 4 8 8 C 1.47170 * 119.99790 * 5.29270 * 6 5 4 9 9 C 1.38405 * 126.87982 * 92.19965 * 8 6 5 10 10 C 1.50697 * 127.32240 * 0.24421 * 9 8 6 11 11 C 1.53780 * 113.61484 * 217.49485 * 10 9 8 12 12 C 1.53785 * 87.08305 * 220.01932 * 11 10 9 13 13 C 1.53781 * 87.07976 * 25.42890 * 12 11 10 14 14 C 1.39672 * 105.35623 * 180.25767 * 9 8 6 15 15 N 1.30869 * 107.86492 * 0.02562 * 14 9 8 16 16 N 1.28447 * 110.92259 * 359.97438 * 15 14 9 17 17 C 1.46498 * 125.18544 * 179.97438 * 16 15 14 18 18 C 1.48114 * 105.93727 * 334.77700 * 5 4 2 19 19 C 1.54601 * 103.42022 * 39.02465 * 18 5 4 20 20 H 1.08998 * 110.57105 * 81.17137 * 19 18 5 21 21 C 1.52996 * 110.98755 * 204.37322 * 19 18 5 22 22 N 1.46496 * 109.47522 * 288.64919 * 21 19 18 23 23 C 1.36936 * 120.00532 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99848 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00411 * 180.02562 * 23 22 21 26 26 N 1.31609 * 120.00216 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99747 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47249 * 90.00484 * 27 25 23 29 29 H 1.48501 * 109.47159 * 210.00335 * 27 25 23 30 30 H 1.48502 * 109.47659 * 330.00184 * 27 25 23 31 31 H 1.08998 * 109.47144 * 299.31668 * 1 2 3 32 32 H 1.08997 * 109.47121 * 59.31942 * 1 2 3 33 33 H 1.09004 * 109.47152 * 179.32353 * 1 2 3 34 34 H 1.09004 * 109.91075 * 0.83257 * 4 2 1 35 35 H 1.09000 * 110.06764 * 239.64667 * 4 2 1 36 36 H 1.09001 * 112.84788 * 348.80117 * 10 9 8 37 37 H 1.09003 * 113.61333 * 334.56255 * 11 10 9 38 38 H 1.08991 * 113.61642 * 105.46772 * 11 10 9 39 39 H 1.09004 * 113.60973 * 270.88362 * 12 11 10 40 40 H 1.08993 * 113.69263 * 139.98933 * 12 11 10 41 41 H 1.09002 * 113.61508 * 220.01647 * 13 12 11 42 42 H 1.09005 * 113.61375 * 89.11893 * 13 12 11 43 43 H 1.08001 * 126.07074 * 179.97438 * 14 9 8 44 44 H 1.09005 * 109.47100 * 274.81460 * 17 16 15 45 45 H 1.08993 * 109.47498 * 34.81456 * 17 16 15 46 46 H 1.09001 * 109.46931 * 154.82056 * 17 16 15 47 47 H 1.08993 * 110.66565 * 157.50523 * 18 5 4 48 48 H 1.08996 * 110.66183 * 280.62951 * 18 5 4 49 49 H 1.08995 * 109.47287 * 48.65449 * 21 19 18 50 50 H 1.09010 * 109.46907 * 168.65499 * 21 19 18 51 51 H 0.97000 * 119.99883 * 0.02562 * 22 21 19 52 52 H 0.97001 * 120.00014 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2229 5 7 2.8804 -1.8851 0.7102 6 6 3.8923 -2.5095 1.3448 7 8 4.5443 -3.3561 0.7637 8 6 4.2084 -2.1669 2.7407 9 6 3.7170 -2.7824 3.8788 10 6 2.7556 -3.9407 3.9483 11 6 1.7477 -3.8362 5.1050 12 6 1.9436 -5.3479 5.3083 13 6 3.3290 -5.1754 4.6636 14 6 4.3015 -2.1016 4.9492 15 7 5.0708 -1.1644 4.4568 16 7 5.0407 -1.1737 3.1728 17 6 5.7848 -0.2581 2.3043 18 6 2.3640 -2.1760 -0.6472 19 6 2.0671 -0.7736 -1.2263 20 1 2.9805 -0.3136 -1.6032 21 6 1.0067 -0.8484 -2.3267 22 7 1.5817 -1.4799 -3.5169 23 6 0.8143 -1.6554 -4.6374 24 1 -0.2148 -1.3279 -4.6438 25 6 1.3590 -2.2543 -5.7650 26 7 0.6215 -2.4224 -6.8420 27 14 3.1391 -2.8202 -5.7542 28 1 3.2090 -4.2254 -5.2790 29 1 3.6941 -2.7344 -7.1289 30 1 3.9296 -1.9507 -4.8462 31 1 -0.3633 0.5032 0.8960 32 1 -0.3633 0.5243 -0.8838 33 1 -0.3634 -1.0276 -0.0121 34 1 1.2331 -1.1554 1.8112 35 1 2.6801 -0.1111 1.8376 36 1 2.2961 -4.1677 2.9862 37 1 2.1033 -3.2336 5.9409 38 1 0.7418 -3.5654 4.7846 39 1 1.2608 -5.9598 4.7187 40 1 1.9835 -5.6474 6.3555 41 1 3.5996 -5.9858 3.9868 42 1 4.1170 -4.9389 5.3787 43 1 4.1456 -2.3109 5.9972 44 1 5.2144 0.6614 2.1720 45 1 6.7472 -0.0262 2.7603 46 1 5.9461 -0.7282 1.3341 47 1 3.1194 -2.6859 -1.2450 48 1 1.4508 -2.7684 -0.5925 49 1 0.1599 -1.4381 -1.9757 50 1 0.6702 0.1580 -2.5761 51 1 2.5061 -1.7738 -3.5114 52 1 1.0023 -2.8406 -7.6301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699959351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:43 Heat of formation + Delta-G solvation = 60.662331 kcal Electronic energy + Delta-G solvation = -31525.248028 eV Core-core repulsion = 27526.750427 eV Total energy + Delta-G solvation = -3998.497602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.63917 -41.24357 -39.50067 -39.29906 -36.63295 -34.49287 -34.30449 -33.20996 -32.27889 -30.79095 -28.62205 -27.75598 -27.10023 -26.43471 -26.23820 -25.00113 -23.61156 -22.79103 -22.32152 -20.66613 -20.38135 -19.97549 -19.44220 -18.78698 -17.70274 -17.20006 -16.87079 -16.74843 -16.51371 -16.38950 -16.07907 -15.76255 -15.42062 -15.04916 -14.91771 -14.75774 -14.30890 -14.14321 -13.99692 -13.84169 -13.71247 -13.56672 -13.46032 -13.27323 -13.19680 -13.11431 -13.08030 -12.87420 -12.78128 -12.21364 -11.90607 -11.84730 -11.71085 -11.66139 -11.57861 -11.45315 -11.36070 -11.33493 -11.19692 -10.96430 -10.22054 -9.98163 -9.67912 -9.29460 -8.04373 -5.36634 0.54612 0.90499 1.34905 1.37770 1.43482 1.48920 1.62963 1.91181 2.45394 3.10622 3.28025 3.40916 3.45278 3.49646 3.70571 3.74635 3.87616 3.91810 3.92433 4.07604 4.10458 4.17616 4.19169 4.26122 4.26581 4.37118 4.46175 4.47724 4.49913 4.59393 4.66829 4.73128 4.74468 4.82009 4.86481 4.91518 4.95807 4.98508 5.02082 5.12481 5.15790 5.16022 5.19365 5.34204 5.38051 5.46808 5.50579 5.62070 5.70800 5.76279 6.19890 6.22208 6.72598 7.00253 7.06911 7.84005 8.00116 9.17230 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.002814 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.150248 B = 9947.198191 C =10095.201013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.107 0.893 4 C 0.111 3.889 5 N -0.602 5.602 6 C 0.610 3.390 7 O -0.570 6.570 8 C -0.041 4.041 9 C -0.140 4.140 10 C -0.049 4.049 11 C -0.117 4.117 12 C -0.135 4.135 13 C -0.132 4.132 14 C 0.012 3.988 15 N -0.293 5.293 16 N -0.276 5.276 17 C 0.079 3.921 18 C 0.112 3.888 19 C -0.098 4.098 20 H 0.080 0.920 21 C 0.168 3.832 22 N -0.762 5.762 23 C -0.228 4.228 24 H 0.064 0.936 25 C -0.060 4.060 26 N -0.982 5.982 27 Si 0.945 3.055 28 H -0.283 1.283 29 H -0.294 1.294 30 H -0.255 1.255 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.213 0.787 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.038 0.962 50 H 0.039 0.961 51 H 0.362 0.638 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 4.905 31.332 32.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.125 0.875 4 C -0.011 4.011 5 N -0.334 5.334 6 C 0.396 3.604 7 O -0.449 6.449 8 C -0.170 4.170 9 C -0.151 4.151 10 C -0.069 4.069 11 C -0.154 4.154 12 C -0.173 4.173 13 C -0.170 4.170 14 C -0.165 4.165 15 N -0.124 5.124 16 N -0.064 5.064 17 C -0.061 4.061 18 C -0.010 4.010 19 C -0.118 4.118 20 H 0.098 0.902 21 C 0.042 3.958 22 N -0.408 5.408 23 C -0.359 4.359 24 H 0.082 0.918 25 C -0.252 4.252 26 N -0.633 5.633 27 Si 0.773 3.227 28 H -0.210 1.210 29 H -0.221 1.221 30 H -0.180 1.180 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.229 0.771 44 H 0.127 0.873 45 H 0.133 0.867 46 H 0.101 0.899 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.195 0.805 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.131 5.440 31.160 32.220 hybrid contribution 0.601 -1.364 -1.451 2.080 sum 6.732 4.076 29.709 30.734 Atomic orbital electron populations 1.21915 0.92907 1.02393 1.03117 1.22012 0.97437 0.99744 0.91052 0.87516 1.22406 0.94862 0.87061 0.96781 1.48785 1.32437 1.34814 1.17335 1.16851 0.79042 0.80647 0.83848 1.90848 1.51645 1.35011 1.67353 1.21133 1.03512 0.98481 0.93840 1.20716 1.03289 1.00898 0.90225 1.20923 0.95183 0.91848 0.98936 1.22938 0.98413 0.96993 0.97077 1.22798 0.96037 0.96594 1.01845 1.22994 0.98307 0.96252 0.99404 1.23761 0.97557 0.94194 1.00961 1.73148 1.23115 1.23920 0.92179 1.45757 1.32536 1.23935 1.04154 1.22427 0.98321 0.92738 0.92577 1.22479 0.98923 0.97974 0.81651 1.22352 0.99369 0.94696 0.95389 0.90194 1.20868 0.94373 0.96207 0.84314 1.42844 1.11627 1.73945 1.12361 1.19047 0.95129 1.31062 0.90653 0.91850 1.25397 1.01762 1.02188 0.95836 1.69855 1.37740 1.51262 1.04469 0.85555 0.81594 0.78643 0.76870 1.21003 1.22102 1.18022 0.90206 0.91966 0.92839 0.89572 0.89953 0.91205 0.88131 0.90988 0.90394 0.89585 0.92858 0.89013 0.77066 0.87333 0.86689 0.89942 0.92160 0.90093 0.94422 0.94338 0.80542 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 7.78 71.98 0.56 -1.87 16 2 C -0.08 -1.46 3.53 -9.90 -0.03 -1.50 16 3 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 4 C 0.11 1.93 6.37 86.53 0.55 2.48 16 5 N -0.60 -15.00 3.29 -814.24 -2.68 -17.69 16 6 C 0.61 17.74 6.74 86.59 0.58 18.33 16 7 O -0.57 -21.79 17.30 -4.12 -0.07 -21.86 16 8 C -0.04 -1.00 5.77 40.79 0.24 -0.77 16 9 C -0.14 -2.92 5.49 -19.48 -0.11 -3.03 16 10 C -0.05 -0.91 4.12 -11.01 -0.05 -0.96 16 11 C -0.12 -1.44 7.58 31.12 0.24 -1.21 16 12 C -0.14 -1.65 8.08 31.12 0.25 -1.40 16 13 C -0.13 -2.15 7.62 31.12 0.24 -1.91 16 14 C 0.01 0.21 11.25 85.18 0.96 1.17 16 15 N -0.29 -6.02 11.90 -57.14 -0.68 -6.70 16 16 N -0.28 -5.74 3.75 -356.02 -1.33 -7.07 16 17 C 0.08 1.13 11.21 127.77 1.43 2.57 16 18 C 0.11 3.22 6.46 86.61 0.56 3.78 16 19 C -0.10 -2.57 2.98 -9.70 -0.03 -2.59 16 20 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 21 C 0.17 5.72 4.44 86.38 0.38 6.11 16 22 N -0.76 -34.61 5.33 -343.47 -1.83 -36.44 16 23 C -0.23 -12.80 10.47 84.03 0.88 -11.92 16 24 H 0.06 3.85 8.06 -2.91 -0.02 3.82 16 25 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 26 N -0.98 -63.10 13.97 21.65 0.30 -62.80 16 27 Si 0.95 46.51 27.73 68.60 1.90 48.41 16 28 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 30 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.17 6.76 -2.39 -0.02 1.16 16 33 H 0.05 0.99 7.51 -2.39 -0.02 0.98 16 34 H 0.09 1.34 7.68 -2.39 -0.02 1.32 16 35 H 0.08 1.23 7.80 -2.39 -0.02 1.21 16 36 H 0.07 1.60 7.94 -2.39 -0.02 1.58 16 37 H 0.10 0.92 7.19 -2.39 -0.02 0.91 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 1.32 8.03 -2.38 -0.02 1.31 16 43 H 0.21 2.21 7.68 -2.91 -0.02 2.19 16 44 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 46 H 0.08 1.37 7.66 -2.39 -0.02 1.35 16 47 H 0.06 2.07 7.81 -2.39 -0.02 2.05 16 48 H 0.08 2.34 7.94 -2.39 -0.02 2.32 16 49 H 0.04 1.29 6.81 -2.39 -0.02 1.27 16 50 H 0.04 1.31 7.38 -2.38 -0.02 1.29 16 51 H 0.36 16.19 5.53 -92.71 -0.51 15.68 16 52 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -77.06 412.79 3.07 -73.99 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.34 Total: 25.97 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 7.12 Total: 4.18 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -6.22 Total: -130.70 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.07 Total: -21.86 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Total: -77.06 3.07 -73.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699959351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.654 kcal (2) G-P(sol) polarization free energy of solvation -77.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds