Wall clock time and date at job start Wed Apr 1 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.79717 * 2 1 4 4 C 1.54937 * 110.74054 * 236.70906 * 2 1 3 5 5 N 1.48122 * 103.25673 * 279.03782 * 4 2 1 6 6 C 1.34775 * 127.03710 * 140.73996 * 5 4 2 7 7 O 1.21630 * 120.00065 * 174.94997 * 6 5 4 8 8 C 1.47160 * 119.99914 * 354.95560 * 6 5 4 9 9 C 1.38401 * 126.88503 * 263.66127 * 8 6 5 10 10 C 1.50698 * 127.32190 * 359.97438 * 9 8 6 11 11 C 1.53777 * 113.61554 * 219.13596 * 10 9 8 12 12 C 1.53954 * 87.02042 * 220.04600 * 11 10 9 13 13 C 1.53780 * 87.11047 * 25.36386 * 12 11 10 14 14 C 1.39677 * 105.35855 * 179.91519 * 9 8 6 15 15 N 1.30861 * 107.86256 * 0.35277 * 14 9 8 16 16 N 1.28445 * 110.93008 * 359.77341 * 15 14 9 17 17 C 1.46492 * 125.19442 * 180.02562 * 16 15 14 18 18 C 1.47492 * 105.93274 * 320.71121 * 5 4 2 19 19 C 1.54007 * 107.08184 * 25.44263 * 18 5 4 20 20 H 1.08998 * 110.32936 * 239.70395 * 19 18 5 21 21 C 1.53005 * 110.32479 * 117.58520 * 19 18 5 22 22 N 1.46502 * 109.47056 * 66.45905 * 21 19 18 23 23 C 1.36930 * 120.00026 * 179.72473 * 22 21 19 24 24 H 1.07998 * 120.00298 * 0.27064 * 23 22 21 25 25 C 1.38816 * 119.99793 * 180.27034 * 23 22 21 26 26 N 1.31619 * 120.00350 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99650 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47510 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46718 * 120.00267 * 27 25 23 30 30 H 1.48496 * 109.46978 * 239.99966 * 27 25 23 31 31 H 1.08992 * 109.47402 * 296.70937 * 1 2 3 32 32 H 1.09004 * 109.46817 * 56.71671 * 1 2 3 33 33 H 1.09002 * 109.47065 * 176.70863 * 1 2 3 34 34 H 1.09000 * 110.66553 * 160.60005 * 4 2 1 35 35 H 1.08997 * 110.81097 * 37.54731 * 4 2 1 36 36 H 1.08998 * 112.84785 * 350.33326 * 10 9 8 37 37 H 1.08999 * 113.61762 * 334.56836 * 11 10 9 38 38 H 1.09001 * 113.61248 * 105.46643 * 11 10 9 39 39 H 1.09003 * 113.53729 * 270.80924 * 12 11 10 40 40 H 1.09006 * 113.73952 * 139.94614 * 12 11 10 41 41 H 1.08998 * 113.61168 * 220.09150 * 13 12 11 42 42 H 1.08997 * 113.68896 * 89.19650 * 13 12 11 43 43 H 1.08000 * 126.06564 * 180.10837 * 14 9 8 44 44 H 1.08999 * 109.47333 * 274.70371 * 17 16 15 45 45 H 1.08997 * 109.47291 * 34.70507 * 17 16 15 46 46 H 1.09001 * 109.47019 * 154.69938 * 17 16 15 47 47 H 1.08995 * 109.91100 * 266.08476 * 18 5 4 48 48 H 1.08995 * 110.07463 * 144.88671 * 18 5 4 49 49 H 1.08998 * 109.47254 * 306.45100 * 21 19 18 50 50 H 1.08998 * 109.46553 * 186.45332 * 21 19 18 51 51 H 0.97003 * 119.99832 * 359.97438 * 22 21 19 52 52 H 0.96997 * 120.00098 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7953 -1.2112 5 7 1.9872 -2.2039 -0.7622 6 6 1.6234 -3.2698 -1.5024 7 8 1.6803 -4.3881 -1.0273 8 6 1.1576 -3.0808 -2.8854 9 6 -0.1551 -2.9934 -3.3152 10 6 -1.4003 -3.0719 -2.4701 11 6 -2.5459 -3.8555 -3.1323 12 6 -3.4971 -2.7842 -2.5686 13 6 -2.2949 -1.8253 -2.5739 14 6 -0.0804 -2.8156 -4.6986 15 7 1.1843 -2.8101 -5.0349 16 7 1.9341 -2.9623 -4.0031 17 6 3.3983 -3.0023 -4.0220 18 6 2.3763 -2.2015 0.6605 19 6 2.0775 -0.7937 1.2088 20 1 2.9906 -0.3320 1.5845 21 6 1.0251 -0.8672 2.3170 22 7 1.5800 -1.5792 3.4708 23 6 0.8173 -1.7638 4.5930 24 1 -0.1947 -1.3883 4.6259 25 6 1.3451 -2.4335 5.6884 26 7 2.5783 -2.8916 5.6482 27 14 0.3048 -2.6846 7.2195 28 1 -1.0357 -2.0804 7.0119 29 1 0.1564 -4.1383 7.4841 30 1 0.9666 -2.0354 8.3795 31 1 -0.3634 0.4619 0.9179 32 1 -0.3633 0.5640 -0.8591 33 1 -0.3633 -1.0260 -0.0590 34 1 3.1146 -0.5226 -1.4131 35 1 1.4604 -0.6321 -2.0938 36 1 -1.1970 -3.3791 -1.4443 37 1 -2.4958 -3.8656 -4.2211 38 1 -2.7008 -4.8465 -2.7055 39 1 -3.8682 -3.0138 -1.5697 40 1 -4.2898 -2.4945 -3.2584 41 1 -2.2475 -1.1797 -1.6970 42 1 -2.1750 -1.2785 -3.5092 43 1 -0.9178 -2.7063 -5.3718 44 1 3.7314 -4.0172 -4.2388 45 1 3.7704 -2.3257 -4.7913 46 1 3.7827 -2.6935 -3.0499 47 1 3.4403 -2.4185 0.7547 48 1 1.7961 -2.9440 1.2083 49 1 0.1473 -1.3987 1.9497 50 1 0.7406 0.1418 2.6152 51 1 2.4889 -1.9168 3.4412 52 1 2.9471 -3.3593 6.4138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699959353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:54 Heat of formation + Delta-G solvation = 79.593848 kcal Electronic energy + Delta-G solvation = -32064.971809 eV Core-core repulsion = 28067.295139 eV Total energy + Delta-G solvation = -3997.676670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.72414 -40.04266 -38.68758 -37.94189 -34.68726 -33.53705 -32.82160 -31.31375 -31.13320 -29.06327 -27.72068 -26.86704 -25.76265 -25.61213 -25.14731 -23.60138 -22.29324 -21.55940 -21.41263 -19.30344 -19.18116 -19.10901 -17.91064 -16.95757 -16.63268 -16.22745 -15.91417 -15.70536 -15.42807 -14.85843 -14.76240 -14.35950 -13.96340 -13.67358 -13.51883 -13.38414 -13.27261 -13.15082 -12.96956 -12.81814 -12.61097 -12.54668 -12.34934 -12.22163 -11.93294 -11.84947 -11.68414 -11.05105 -11.03138 -10.86995 -10.71354 -10.61983 -10.56917 -10.50355 -10.41405 -10.25689 -10.12559 -9.94046 -9.68642 -9.29358 -8.88475 -8.76303 -8.70208 -6.92433 -5.76361 -3.05171 1.52164 1.99995 2.48730 2.59573 2.99254 3.44132 3.49750 3.51964 4.15674 4.25412 4.48229 4.51449 4.59291 4.63550 4.65972 4.78078 4.80087 4.88721 4.90876 4.96724 5.05420 5.16973 5.24802 5.32622 5.36008 5.42092 5.48652 5.54909 5.59033 5.61679 5.64893 5.74522 5.76966 5.79033 5.82932 5.90399 5.98555 6.01668 6.10963 6.16336 6.20541 6.29036 6.34658 6.38605 6.41076 6.45921 6.57196 6.69444 6.84262 7.42056 7.70857 7.89531 7.99998 8.42207 9.53665 10.10340 10.44539 11.46523 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003129 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.370492 B = 8947.139639 C = 9843.715305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.088 0.912 4 C 0.102 3.898 5 N -0.604 5.604 6 C 0.605 3.395 7 O -0.517 6.517 8 C -0.016 4.016 9 C -0.139 4.139 10 C -0.039 4.039 11 C -0.129 4.129 12 C -0.142 4.142 13 C -0.129 4.129 14 C 0.009 3.991 15 N -0.286 5.286 16 N -0.277 5.277 17 C 0.088 3.912 18 C 0.112 3.888 19 C -0.103 4.103 20 H 0.087 0.913 21 C 0.162 3.838 22 N -0.734 5.734 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.182 0.818 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.067 0.933 48 H 0.093 0.907 49 H 0.025 0.975 50 H 0.023 0.977 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 5.634 -23.644 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.106 0.894 4 C -0.021 4.021 5 N -0.338 5.338 6 C 0.389 3.611 7 O -0.391 6.391 8 C -0.144 4.144 9 C -0.149 4.149 10 C -0.059 4.059 11 C -0.167 4.167 12 C -0.180 4.180 13 C -0.166 4.166 14 C -0.169 4.169 15 N -0.116 5.116 16 N -0.064 5.064 17 C -0.052 4.052 18 C -0.009 4.009 19 C -0.123 4.123 20 H 0.105 0.895 21 C 0.035 3.965 22 N -0.378 5.378 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.199 0.801 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.086 0.914 48 H 0.112 0.888 49 H 0.043 0.957 50 H 0.040 0.960 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.713 5.013 -24.234 24.895 hybrid contribution -0.513 -0.374 1.540 1.665 sum -3.226 4.640 -22.694 23.387 Atomic orbital electron populations 1.21827 0.94056 1.02292 1.01842 1.22225 0.96909 0.98828 0.93573 0.89359 1.22670 1.00837 0.80523 0.98108 1.48767 1.65431 1.07181 1.12403 1.16582 0.77565 0.83666 0.83252 1.90896 1.52790 1.23153 1.72235 1.21334 0.91994 1.12209 0.88903 1.20469 0.92159 1.07960 0.94327 1.20877 0.89063 0.97777 0.98139 1.22975 0.95060 0.98236 1.00429 1.22851 0.96579 0.96982 1.01573 1.22961 0.95210 0.96013 1.02424 1.23289 0.93386 1.06069 0.94139 1.73122 1.03736 1.20674 1.14106 1.45499 1.07303 1.50947 1.02695 1.22152 0.73286 1.04794 1.05000 1.22246 1.00556 0.99057 0.79072 1.22361 1.00641 0.93867 0.95416 0.89513 1.20793 0.93634 0.95474 0.86608 1.42405 1.15651 1.67191 1.12560 1.19239 0.95982 1.29938 0.91855 0.91173 1.24732 0.96526 1.01162 0.98461 1.69661 1.14222 1.43393 1.30809 0.86138 0.79317 0.77491 0.83379 1.20554 1.21852 1.21891 0.91376 0.93110 0.92255 0.90937 0.90358 0.88688 0.89946 0.91314 0.90041 0.91401 0.91127 0.89996 0.80071 0.89581 0.88329 0.89096 0.91429 0.88843 0.95732 0.95976 0.78338 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.99 37.16 0.30 -1.34 16 2 C -0.10 -1.07 3.60 -88.74 -0.32 -1.39 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.10 1.07 6.42 -2.13 -0.01 1.05 16 5 N -0.60 -8.31 3.19 -171.12 -0.55 -8.86 16 6 C 0.60 9.42 6.73 -12.64 -0.09 9.34 16 7 O -0.52 -10.27 17.49 5.25 0.09 -10.18 16 8 C -0.02 -0.22 5.52 -82.06 -0.45 -0.67 16 9 C -0.14 -1.69 5.49 -104.03 -0.57 -2.26 16 10 C -0.04 -0.44 4.11 -90.96 -0.37 -0.81 16 11 C -0.13 -1.22 7.60 -25.83 -0.20 -1.42 16 12 C -0.14 -1.21 8.09 -25.83 -0.21 -1.42 16 13 C -0.13 -1.18 7.62 -25.92 -0.20 -1.37 16 14 C 0.01 0.10 11.20 -17.43 -0.20 -0.10 16 15 N -0.29 -3.42 11.90 30.59 0.36 -3.06 16 16 N -0.28 -3.23 3.75 -63.89 -0.24 -3.47 16 17 C 0.09 0.72 11.21 59.84 0.67 1.39 16 18 C 0.11 1.78 6.29 -2.97 -0.02 1.76 16 19 C -0.10 -1.52 3.00 -89.24 -0.27 -1.79 16 20 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 21 C 0.16 3.08 4.17 -4.04 -0.02 3.06 16 22 N -0.73 -18.10 5.33 -59.91 -0.32 -18.41 16 23 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 27 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 31 H 0.07 0.83 6.67 -51.93 -0.35 0.48 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.78 7.61 -51.93 -0.40 0.38 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.80 7.26 -51.93 -0.38 0.42 16 36 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 37 H 0.08 0.68 7.28 -51.93 -0.38 0.30 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.67 7.99 -51.93 -0.41 0.26 16 43 H 0.18 1.44 7.76 -52.49 -0.41 1.03 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.70 7.66 -51.93 -0.40 0.31 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.09 1.85 7.53 -51.93 -0.39 1.46 16 49 H 0.02 0.49 6.85 -51.93 -0.36 0.13 16 50 H 0.02 0.43 7.55 -51.93 -0.39 0.03 16 51 H 0.38 9.92 7.51 -40.82 -0.31 9.61 16 52 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 415.40 15.07 6.26 6.26 Total: -1.00 -34.06 415.40 -9.65 -43.71 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.77 Total: 7.18 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.19 Total: -3.21 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.02 Total: -61.23 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.06 -9.65 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699959353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.308 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds