Wall clock time and date at job start Wed Apr 1 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.79717 * 2 1 4 4 C 1.54937 * 110.74054 * 236.70906 * 2 1 3 5 5 N 1.48122 * 103.25673 * 279.03782 * 4 2 1 6 6 C 1.34775 * 127.03710 * 140.73996 * 5 4 2 7 7 O 1.21630 * 120.00065 * 174.94997 * 6 5 4 8 8 C 1.47160 * 119.99914 * 354.95560 * 6 5 4 9 9 C 1.38401 * 126.88503 * 263.66127 * 8 6 5 10 10 C 1.50698 * 127.32190 * 359.97438 * 9 8 6 11 11 C 1.53777 * 113.61554 * 219.13596 * 10 9 8 12 12 C 1.53954 * 87.02042 * 220.04600 * 11 10 9 13 13 C 1.53780 * 87.11047 * 25.36386 * 12 11 10 14 14 C 1.39677 * 105.35855 * 179.91519 * 9 8 6 15 15 N 1.30861 * 107.86256 * 0.35277 * 14 9 8 16 16 N 1.28445 * 110.93008 * 359.77341 * 15 14 9 17 17 C 1.46492 * 125.19442 * 180.02562 * 16 15 14 18 18 C 1.47492 * 105.93274 * 320.71121 * 5 4 2 19 19 C 1.54007 * 107.08184 * 25.44263 * 18 5 4 20 20 H 1.08998 * 110.32936 * 239.70395 * 19 18 5 21 21 C 1.53005 * 110.32479 * 117.58520 * 19 18 5 22 22 N 1.46502 * 109.47056 * 66.45905 * 21 19 18 23 23 C 1.36930 * 120.00026 * 179.72473 * 22 21 19 24 24 H 1.07998 * 120.00298 * 0.27064 * 23 22 21 25 25 C 1.38816 * 119.99793 * 180.27034 * 23 22 21 26 26 N 1.31619 * 120.00350 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99650 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47510 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46718 * 120.00267 * 27 25 23 30 30 H 1.48496 * 109.46978 * 239.99966 * 27 25 23 31 31 H 1.08992 * 109.47402 * 296.70937 * 1 2 3 32 32 H 1.09004 * 109.46817 * 56.71671 * 1 2 3 33 33 H 1.09002 * 109.47065 * 176.70863 * 1 2 3 34 34 H 1.09000 * 110.66553 * 160.60005 * 4 2 1 35 35 H 1.08997 * 110.81097 * 37.54731 * 4 2 1 36 36 H 1.08998 * 112.84785 * 350.33326 * 10 9 8 37 37 H 1.08999 * 113.61762 * 334.56836 * 11 10 9 38 38 H 1.09001 * 113.61248 * 105.46643 * 11 10 9 39 39 H 1.09003 * 113.53729 * 270.80924 * 12 11 10 40 40 H 1.09006 * 113.73952 * 139.94614 * 12 11 10 41 41 H 1.08998 * 113.61168 * 220.09150 * 13 12 11 42 42 H 1.08997 * 113.68896 * 89.19650 * 13 12 11 43 43 H 1.08000 * 126.06564 * 180.10837 * 14 9 8 44 44 H 1.08999 * 109.47333 * 274.70371 * 17 16 15 45 45 H 1.08997 * 109.47291 * 34.70507 * 17 16 15 46 46 H 1.09001 * 109.47019 * 154.69938 * 17 16 15 47 47 H 1.08995 * 109.91100 * 266.08476 * 18 5 4 48 48 H 1.08995 * 110.07463 * 144.88671 * 18 5 4 49 49 H 1.08998 * 109.47254 * 306.45100 * 21 19 18 50 50 H 1.08998 * 109.46553 * 186.45332 * 21 19 18 51 51 H 0.97003 * 119.99832 * 359.97438 * 22 21 19 52 52 H 0.96997 * 120.00098 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7953 -1.2112 5 7 1.9872 -2.2039 -0.7622 6 6 1.6234 -3.2698 -1.5024 7 8 1.6803 -4.3881 -1.0273 8 6 1.1576 -3.0808 -2.8854 9 6 -0.1551 -2.9934 -3.3152 10 6 -1.4003 -3.0719 -2.4701 11 6 -2.5459 -3.8555 -3.1323 12 6 -3.4971 -2.7842 -2.5686 13 6 -2.2949 -1.8253 -2.5739 14 6 -0.0804 -2.8156 -4.6986 15 7 1.1843 -2.8101 -5.0349 16 7 1.9341 -2.9623 -4.0031 17 6 3.3983 -3.0023 -4.0220 18 6 2.3763 -2.2015 0.6605 19 6 2.0775 -0.7937 1.2088 20 1 2.9906 -0.3320 1.5845 21 6 1.0251 -0.8672 2.3170 22 7 1.5800 -1.5792 3.4708 23 6 0.8173 -1.7638 4.5930 24 1 -0.1947 -1.3883 4.6259 25 6 1.3451 -2.4335 5.6884 26 7 2.5783 -2.8916 5.6482 27 14 0.3048 -2.6846 7.2195 28 1 -1.0357 -2.0804 7.0119 29 1 0.1564 -4.1383 7.4841 30 1 0.9666 -2.0354 8.3795 31 1 -0.3634 0.4619 0.9179 32 1 -0.3633 0.5640 -0.8591 33 1 -0.3633 -1.0260 -0.0590 34 1 3.1146 -0.5226 -1.4131 35 1 1.4604 -0.6321 -2.0938 36 1 -1.1970 -3.3791 -1.4443 37 1 -2.4958 -3.8656 -4.2211 38 1 -2.7008 -4.8465 -2.7055 39 1 -3.8682 -3.0138 -1.5697 40 1 -4.2898 -2.4945 -3.2584 41 1 -2.2475 -1.1797 -1.6970 42 1 -2.1750 -1.2785 -3.5092 43 1 -0.9178 -2.7063 -5.3718 44 1 3.7314 -4.0172 -4.2388 45 1 3.7704 -2.3257 -4.7913 46 1 3.7827 -2.6935 -3.0499 47 1 3.4403 -2.4185 0.7547 48 1 1.7961 -2.9440 1.2083 49 1 0.1473 -1.3987 1.9497 50 1 0.7406 0.1418 2.6152 51 1 2.4889 -1.9168 3.4412 52 1 2.9471 -3.3593 6.4138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699959353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:52 Heat of formation + Delta-G solvation = 58.425894 kcal Electronic energy + Delta-G solvation = -32065.889720 eV Core-core repulsion = 28067.295139 eV Total energy + Delta-G solvation = -3998.594581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.61891 -41.22295 -39.46874 -39.23213 -36.46798 -34.41505 -34.19705 -32.84553 -32.25954 -30.52236 -28.58253 -27.91007 -27.00597 -26.42022 -26.21415 -25.14611 -23.78274 -22.57352 -22.30199 -20.41780 -20.32210 -19.96123 -19.23455 -18.66375 -17.71452 -17.35894 -16.86091 -16.72159 -16.58688 -16.33683 -15.74564 -15.48492 -15.39141 -15.24943 -14.81202 -14.50853 -14.27818 -14.17954 -13.97870 -13.77071 -13.66464 -13.47239 -13.26295 -13.23640 -13.13083 -13.09101 -12.94952 -12.79505 -12.78098 -12.13908 -11.92837 -11.88304 -11.71121 -11.62809 -11.54836 -11.40953 -11.34368 -11.30264 -11.17658 -10.94063 -10.18225 -9.91197 -9.65227 -8.99831 -7.96385 -5.24578 0.56345 0.97707 1.45197 1.46627 1.50592 1.56174 1.64301 1.97650 2.54575 3.18544 3.37694 3.43380 3.47309 3.62566 3.72207 3.77767 3.89665 3.94050 4.11058 4.14056 4.18691 4.21780 4.22357 4.29512 4.30695 4.46474 4.50270 4.52086 4.55382 4.61833 4.69037 4.76075 4.79018 4.87971 4.90184 4.92776 4.97457 4.99838 5.01812 5.13617 5.14848 5.16047 5.23108 5.34460 5.40416 5.47905 5.49006 5.52466 5.63556 5.73749 6.26381 6.27692 6.78979 7.02263 7.32766 8.08933 8.31136 9.27335 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003129 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.370492 B = 8947.139639 C = 9843.715305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 H 0.123 0.877 4 C 0.105 3.895 5 N -0.597 5.597 6 C 0.607 3.393 7 O -0.576 6.576 8 C -0.039 4.039 9 C -0.140 4.140 10 C -0.050 4.050 11 C -0.126 4.126 12 C -0.136 4.136 13 C -0.118 4.118 14 C 0.013 3.987 15 N -0.290 5.290 16 N -0.275 5.275 17 C 0.079 3.921 18 C 0.117 3.883 19 C -0.094 4.094 20 H 0.096 0.904 21 C 0.165 3.835 22 N -0.746 5.746 23 C -0.243 4.243 24 H 0.074 0.926 25 C -0.075 4.075 26 N -0.968 5.968 27 Si 0.970 3.030 28 H -0.266 1.266 29 H -0.297 1.297 30 H -0.290 1.290 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.214 0.786 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.044 0.956 49 H 0.013 0.987 50 H 0.031 0.969 51 H 0.374 0.626 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 8.171 -26.252 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.141 0.859 4 C -0.017 4.017 5 N -0.329 5.329 6 C 0.393 3.607 7 O -0.454 6.454 8 C -0.167 4.167 9 C -0.151 4.151 10 C -0.070 4.070 11 C -0.164 4.164 12 C -0.174 4.174 13 C -0.155 4.155 14 C -0.164 4.164 15 N -0.121 5.121 16 N -0.063 5.063 17 C -0.060 4.060 18 C -0.006 4.006 19 C -0.113 4.113 20 H 0.115 0.885 21 C 0.039 3.961 22 N -0.389 5.389 23 C -0.375 4.375 24 H 0.092 0.908 25 C -0.267 4.267 26 N -0.619 5.619 27 Si 0.799 3.201 28 H -0.190 1.190 29 H -0.224 1.224 30 H -0.217 1.217 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.144 0.856 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.031 0.969 50 H 0.049 0.951 51 H 0.205 0.795 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.592 7.621 -26.880 28.170 hybrid contribution -0.269 -1.167 2.301 2.594 sum -3.861 6.453 -24.579 25.704 Atomic orbital electron populations 1.21796 0.94315 1.01026 1.02644 1.22278 0.96620 1.00010 0.91535 0.85873 1.22923 1.02904 0.77812 0.98024 1.48788 1.64224 1.08546 1.11353 1.16921 0.76549 0.83056 0.84170 1.90854 1.55381 1.25487 1.73694 1.21083 0.92988 1.14504 0.88161 1.20679 0.91783 1.07422 0.95195 1.20870 0.89843 1.00006 0.96301 1.23019 0.94248 0.97682 1.01427 1.22814 0.96851 0.96172 1.01529 1.22942 0.94366 0.95131 1.03061 1.23736 0.93900 1.05094 0.93642 1.73129 1.04262 1.20718 1.13997 1.45768 1.08287 1.50359 1.01883 1.22437 0.71626 1.05858 1.06097 1.22027 0.99785 0.98625 0.80150 1.22250 0.99854 0.93757 0.95437 0.88546 1.20905 0.94437 0.94617 0.86167 1.42627 1.15138 1.67675 1.13464 1.19635 0.96298 1.28803 0.92746 0.90808 1.25538 0.97797 1.01781 1.01596 1.69811 1.15897 1.44756 1.31457 0.85122 0.78419 0.76862 0.79685 1.18994 1.22418 1.21692 0.92264 0.90341 0.94831 0.87961 0.89110 0.92528 0.87900 0.92570 0.91080 0.89183 0.91806 0.88008 0.76987 0.89231 0.85620 0.88971 0.91128 0.93747 0.96915 0.95073 0.79459 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 7.99 71.98 0.57 -2.41 16 2 C -0.09 -1.68 3.60 -9.58 -0.03 -1.72 16 3 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 4 C 0.10 1.94 6.42 86.73 0.56 2.49 16 5 N -0.60 -16.63 3.19 -813.56 -2.59 -19.23 16 6 C 0.61 19.72 6.73 86.59 0.58 20.30 16 7 O -0.58 -24.72 17.49 -4.13 -0.07 -24.79 16 8 C -0.04 -1.04 5.52 40.78 0.22 -0.81 16 9 C -0.14 -3.27 5.49 -19.48 -0.11 -3.38 16 10 C -0.05 -1.14 4.11 -11.02 -0.05 -1.18 16 11 C -0.13 -2.26 7.60 31.18 0.24 -2.02 16 12 C -0.14 -2.11 8.09 31.18 0.25 -1.86 16 13 C -0.12 -1.95 7.62 31.12 0.24 -1.72 16 14 C 0.01 0.25 11.20 85.19 0.95 1.21 16 15 N -0.29 -6.23 11.90 -57.14 -0.68 -6.91 16 16 N -0.27 -6.00 3.75 -356.04 -1.33 -7.34 16 17 C 0.08 1.15 11.21 127.77 1.43 2.59 16 18 C 0.12 3.86 6.29 86.53 0.54 4.41 16 19 C -0.09 -2.71 3.00 -9.90 -0.03 -2.74 16 20 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 21 C 0.16 6.36 4.17 86.38 0.36 6.72 16 22 N -0.75 -37.94 5.33 -343.45 -1.83 -39.77 16 23 C -0.24 -13.76 9.99 84.04 0.84 -12.92 16 24 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 25 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 26 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 27 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 29 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 30 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 31 H 0.06 1.36 6.67 -2.39 -0.02 1.35 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 0.88 7.61 -2.39 -0.02 0.86 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.55 7.26 -2.39 -0.02 1.53 16 36 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 37 H 0.10 1.42 7.28 -2.39 -0.02 1.40 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.02 8.14 -2.38 -0.02 1.01 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.10 1.31 7.99 -2.39 -0.02 1.29 16 43 H 0.21 2.50 7.76 -2.91 -0.02 2.48 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 45 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.09 1.31 7.66 -2.39 -0.02 1.29 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.04 1.91 7.53 -2.39 -0.02 1.89 16 49 H 0.01 0.53 6.85 -2.39 -0.02 0.52 16 50 H 0.03 1.17 7.55 -2.39 -0.02 1.15 16 51 H 0.37 20.14 7.51 -92.71 -0.70 19.45 16 52 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -78.07 415.40 3.06 -75.01 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.22 Total: 30.83 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 7.05 Total: 3.05 kcal Atomic # 7 Polarization: -126.99 SS G_CDS: -6.16 Total: -133.14 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -78.07 3.06 -75.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699959353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.431 kcal (2) G-P(sol) polarization free energy of solvation -78.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds