Wall clock time and date at job start Wed Apr 1 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.63765 * 2 1 4 4 C 1.54316 * 110.72099 * 123.14531 * 2 1 3 5 5 N 1.47023 * 107.27276 * 140.55759 * 4 2 1 6 6 C 1.34777 * 125.65037 * 181.01937 * 5 4 2 7 7 O 1.21283 * 119.99750 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99928 * 0.30479 * 6 5 4 9 9 C 1.50700 * 109.46869 * 179.72354 * 8 6 5 10 10 C 1.40051 * 126.09710 * 264.68753 * 9 8 6 11 11 N 1.31027 * 108.25285 * 179.81512 * 10 9 8 12 12 N 1.39650 * 108.12937 * 0.41724 * 11 10 9 13 13 C 1.34748 * 126.09988 * 85.00083 * 9 8 6 14 14 C 1.50863 * 127.76716 * 0.07222 * 13 9 8 15 15 C 1.53433 * 108.17993 * 164.20839 * 14 13 9 16 16 C 1.53140 * 109.20261 * 48.53570 * 15 14 13 17 17 C 1.46584 * 127.55043 * 179.80442 * 12 11 10 18 18 C 1.47423 * 108.69861 * 1.28833 * 5 4 2 19 19 C 1.55132 * 104.72496 * 335.54967 * 18 5 4 20 20 H 1.08991 * 111.22629 * 279.17857 * 19 18 5 21 21 C 1.52998 * 110.90294 * 155.27628 * 19 18 5 22 22 N 1.46498 * 109.47137 * 72.98150 * 21 19 18 23 23 C 1.36944 * 119.99991 * 179.97438 * 22 21 19 24 24 H 1.08002 * 119.99803 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99947 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99893 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00036 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47005 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47022 * 119.99784 * 27 25 23 30 30 H 1.48491 * 109.47427 * 240.00129 * 27 25 23 31 31 H 1.08997 * 109.47687 * 298.30629 * 1 2 3 32 32 H 1.09006 * 109.47538 * 58.30770 * 1 2 3 33 33 H 1.08998 * 109.47206 * 178.30788 * 1 2 3 34 34 H 1.08997 * 109.88569 * 21.13860 * 4 2 1 35 35 H 1.09008 * 109.88164 * 259.97634 * 4 2 1 36 36 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 37 37 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 38 38 H 1.08001 * 125.87491 * 359.95429 * 10 9 8 39 39 H 1.08999 * 109.72367 * 283.85123 * 14 13 9 40 40 H 1.09000 * 109.72402 * 44.51610 * 14 13 9 41 41 H 1.09001 * 109.50698 * 288.61714 * 15 14 13 42 42 H 1.09005 * 109.51958 * 168.46262 * 15 14 13 43 43 H 1.09005 * 109.45744 * 170.55047 * 16 15 14 44 44 H 1.09002 * 109.46253 * 50.60096 * 16 15 14 45 45 H 1.08998 * 109.58178 * 282.44571 * 17 12 11 46 46 H 1.08996 * 109.58494 * 42.72047 * 17 12 11 47 47 H 1.09004 * 110.36778 * 94.48512 * 18 5 4 48 48 H 1.09006 * 110.36423 * 216.80164 * 18 5 4 49 49 H 1.09008 * 109.46892 * 192.97587 * 21 19 18 50 50 H 1.09002 * 109.47603 * 312.97573 * 21 19 18 51 51 H 0.96998 * 119.99963 * 359.97438 * 22 21 19 52 52 H 0.97004 * 119.99436 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2445 -1.5495 0.7415 6 6 3.9924 -2.3810 1.4936 7 8 4.9384 -2.9584 1.0011 8 6 3.6493 -2.5982 2.9449 9 6 4.6280 -3.5699 3.5524 10 6 4.4419 -4.9512 3.6898 11 7 5.5097 -5.4546 4.2583 12 7 6.4022 -4.4100 4.5083 13 6 5.8357 -3.2638 4.0656 14 6 6.4841 -1.9046 4.1551 15 6 7.6478 -1.9939 5.1512 16 6 8.5062 -3.2167 4.8146 17 6 7.7250 -4.4957 5.1342 18 6 3.4665 -1.2465 -0.6841 19 6 2.0789 -0.7974 -1.2125 20 1 1.4448 -1.6554 -1.4353 21 6 2.2277 0.1041 -2.4398 22 7 2.6328 -0.7038 -3.5928 23 6 2.8280 -0.1091 -4.8108 24 1 2.6830 0.9555 -4.9214 25 6 3.2123 -0.8744 -5.9032 26 7 3.3886 -2.1718 -5.7685 27 14 3.4780 -0.0633 -7.5649 28 1 3.2164 1.3941 -7.4517 29 1 4.8799 -0.2815 -8.0037 30 1 2.5497 -0.6576 -8.5599 31 1 -0.3634 0.4873 0.9047 32 1 -0.3634 0.5399 -0.8744 33 1 -0.3633 -1.0272 -0.0303 34 1 1.3130 -1.4732 1.5799 35 1 2.3740 -0.0990 1.9979 36 1 3.7025 -1.6483 3.4769 37 1 2.6400 -3.0023 3.0230 38 1 3.5693 -5.5063 3.3785 39 1 6.8610 -1.6116 3.1752 40 1 5.7563 -1.1721 4.5041 41 1 7.2541 -2.0926 6.1628 42 1 8.2559 -1.0919 5.0826 43 1 9.4209 -3.1923 5.4069 44 1 8.7599 -3.2016 3.7546 45 1 7.6125 -4.5950 6.2138 46 1 8.2596 -5.3606 4.7416 47 1 4.1947 -0.4426 -0.7922 48 1 3.8032 -2.1380 -1.2134 49 1 1.2747 0.5886 -2.6524 50 1 2.9853 0.8629 -2.2436 51 1 2.7626 -1.6599 -3.4935 52 1 3.6575 -2.7065 -6.5318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754817724.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:44 Heat of formation + Delta-G solvation = 39.892066 kcal Electronic energy + Delta-G solvation = -30568.087352 eV Core-core repulsion = 26568.689084 eV Total energy + Delta-G solvation = -3999.398268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.72451 -39.90744 -37.79718 -36.75693 -34.61845 -33.51948 -32.80714 -31.39070 -30.73477 -30.43903 -29.04012 -26.83738 -26.20493 -25.00278 -24.47570 -23.04333 -22.42272 -21.21045 -20.74775 -19.94851 -19.31198 -18.76834 -17.17508 -16.79632 -16.54529 -16.11688 -15.88031 -15.22255 -14.87519 -14.67555 -14.60230 -14.34322 -14.26587 -14.05405 -13.82908 -13.61783 -13.23475 -13.14150 -13.03949 -12.85421 -12.65824 -12.32134 -12.18437 -12.11608 -11.93002 -11.85705 -11.45807 -11.38778 -11.30344 -11.28765 -11.07084 -10.85713 -10.63848 -10.54214 -10.43211 -10.31759 -9.96757 -9.67758 -9.62561 -9.26962 -8.85774 -8.44376 -8.39356 -6.89776 -5.73300 -3.02577 1.79014 2.35482 2.63038 2.83813 3.27914 3.45460 3.50492 3.53232 4.05652 4.24551 4.32830 4.40760 4.52461 4.59267 4.65880 4.73103 4.84500 4.85703 4.96479 4.98490 5.09563 5.13893 5.21251 5.23102 5.33489 5.39118 5.42045 5.46985 5.49412 5.52002 5.54872 5.57339 5.61633 5.75764 5.76986 5.81064 5.86027 6.03233 6.06025 6.09872 6.18153 6.23585 6.34433 6.43045 6.51798 6.59334 6.73351 6.86296 6.91115 7.66259 7.71892 7.72725 8.39248 8.44927 9.56155 10.13716 10.47870 11.49415 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.002260 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.115428 B =12385.329862 C =13396.373735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.086 0.914 4 C 0.106 3.894 5 N -0.622 5.622 6 C 0.523 3.477 7 O -0.530 6.530 8 C -0.052 4.052 9 C -0.218 4.218 10 C 0.061 3.939 11 N -0.298 5.298 12 N -0.371 5.371 13 C 0.104 3.896 14 C -0.062 4.062 15 C -0.125 4.125 16 C -0.138 4.138 17 C 0.135 3.865 18 C 0.116 3.884 19 C -0.100 4.100 20 H 0.086 0.914 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.071 0.929 25 C -0.014 4.014 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.181 0.819 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.024 0.976 50 H 0.020 0.980 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 2.124 28.385 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.018 4.018 5 N -0.357 5.357 6 C 0.311 3.689 7 O -0.406 6.406 8 C -0.093 4.093 9 C -0.230 4.230 10 C -0.125 4.125 11 N -0.118 5.118 12 N -0.154 5.154 13 C -0.023 4.023 14 C -0.100 4.100 15 C -0.162 4.162 16 C -0.177 4.177 17 C 0.014 3.986 18 C -0.006 4.006 19 C -0.120 4.120 20 H 0.104 0.896 21 C 0.038 3.962 22 N -0.377 5.377 23 C -0.371 4.371 24 H 0.089 0.911 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.198 0.802 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.041 0.959 50 H 0.038 0.962 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.368 0.754 28.555 28.763 hybrid contribution -0.244 0.698 -1.351 1.540 sum 3.124 1.452 27.204 27.422 Atomic orbital electron populations 1.21744 0.93835 1.02213 1.01949 1.22213 0.96304 0.99492 0.93797 0.89593 1.22120 0.87835 0.94586 0.97218 1.48624 1.30193 1.44849 1.12014 1.20378 0.82198 0.78184 0.88119 1.90732 1.28616 1.47562 1.73677 1.19838 0.98870 0.98922 0.91709 1.18955 0.97230 0.94546 1.12250 1.23758 0.97288 0.93292 0.98127 1.77249 1.00871 1.11155 1.22506 1.48474 1.14868 1.04339 1.47713 1.20637 0.93551 0.89771 0.98372 1.20474 0.97236 0.91157 1.01173 1.21661 0.96732 0.98520 0.99314 1.21967 0.98754 0.93236 1.03710 1.21737 0.79187 0.99983 0.97702 1.22345 0.97284 1.01470 0.79480 1.22699 0.95424 0.99187 0.94673 0.89615 1.20580 0.97163 0.92751 0.85739 1.42381 1.82597 1.07552 1.05185 1.19248 1.38604 0.92710 0.86539 0.91142 1.24755 1.02512 0.95596 0.98138 1.69677 1.53778 1.04349 1.30155 0.86129 0.77411 0.78280 0.84432 1.20577 1.21891 1.21890 0.92719 0.91702 0.92426 0.91427 0.91739 0.88927 0.88384 0.80237 0.89045 0.89226 0.91246 0.90181 0.89072 0.90352 0.90142 0.89113 0.91392 0.90060 0.95851 0.96182 0.78216 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.13 37.16 0.34 -1.01 16 2 C -0.10 -1.10 3.01 -88.79 -0.27 -1.37 16 3 H 0.09 0.93 8.04 -51.93 -0.42 0.51 16 4 C 0.11 1.06 6.08 -3.07 -0.02 1.04 16 5 N -0.62 -8.56 3.32 -170.38 -0.57 -9.13 16 6 C 0.52 7.68 7.84 -10.98 -0.09 7.59 16 7 O -0.53 -10.34 16.29 5.55 0.09 -10.25 16 8 C -0.05 -0.55 5.18 -29.03 -0.15 -0.70 16 9 C -0.22 -2.71 4.59 -105.18 -0.48 -3.19 16 10 C 0.06 0.80 11.97 -17.22 -0.21 0.59 16 11 N -0.30 -4.21 12.62 30.69 0.39 -3.82 16 12 N -0.37 -4.49 4.04 -56.96 -0.23 -4.72 16 13 C 0.10 1.22 6.59 -82.22 -0.54 0.68 16 14 C -0.06 -0.53 6.02 -27.58 -0.17 -0.70 16 15 C -0.12 -0.76 5.97 -26.43 -0.16 -0.92 16 16 C -0.14 -0.86 5.93 -26.53 -0.16 -1.02 16 17 C 0.14 1.10 7.28 -3.87 -0.03 1.07 16 18 C 0.12 1.93 6.33 -2.41 -0.02 1.92 16 19 C -0.10 -1.56 2.51 -88.35 -0.22 -1.78 16 20 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 21 C 0.17 3.20 5.72 -4.04 -0.02 3.18 16 22 N -0.73 -18.52 5.55 -59.91 -0.33 -18.85 16 23 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 26 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 27 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 34 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.09 0.74 7.89 -51.93 -0.41 0.33 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.18 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.61 7.94 -51.93 -0.41 0.20 16 41 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.61 8.12 -51.93 -0.42 0.18 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 48 H 0.08 1.62 8.03 -51.93 -0.42 1.20 16 49 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 50 H 0.02 0.40 7.96 -51.93 -0.41 -0.02 16 51 H 0.38 10.35 7.67 -40.82 -0.31 10.04 16 52 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 416.65 15.07 6.28 6.28 Total: -1.00 -36.69 416.65 -10.18 -46.87 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -9.08 Total: 5.96 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.43 Total: -2.00 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.02 Total: -64.49 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -36.69 -10.18 -46.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754817724.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.757 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds