Wall clock time and date at job start Wed Apr 1 2020 05:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.63765 * 2 1 4 4 C 1.54316 * 110.72099 * 123.14531 * 2 1 3 5 5 N 1.47023 * 107.27276 * 140.55759 * 4 2 1 6 6 C 1.34777 * 125.65037 * 181.01937 * 5 4 2 7 7 O 1.21283 * 119.99750 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99928 * 0.30479 * 6 5 4 9 9 C 1.50700 * 109.46869 * 179.72354 * 8 6 5 10 10 C 1.40051 * 126.09710 * 264.68753 * 9 8 6 11 11 N 1.31027 * 108.25285 * 179.81512 * 10 9 8 12 12 N 1.39650 * 108.12937 * 0.41724 * 11 10 9 13 13 C 1.34748 * 126.09988 * 85.00083 * 9 8 6 14 14 C 1.50863 * 127.76716 * 0.07222 * 13 9 8 15 15 C 1.53433 * 108.17993 * 164.20839 * 14 13 9 16 16 C 1.53140 * 109.20261 * 48.53570 * 15 14 13 17 17 C 1.46584 * 127.55043 * 179.80442 * 12 11 10 18 18 C 1.47423 * 108.69861 * 1.28833 * 5 4 2 19 19 C 1.55132 * 104.72496 * 335.54967 * 18 5 4 20 20 H 1.08991 * 111.22629 * 279.17857 * 19 18 5 21 21 C 1.52998 * 110.90294 * 155.27628 * 19 18 5 22 22 N 1.46498 * 109.47137 * 72.98150 * 21 19 18 23 23 C 1.36944 * 119.99991 * 179.97438 * 22 21 19 24 24 H 1.08002 * 119.99803 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99947 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99893 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00036 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47005 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47022 * 119.99784 * 27 25 23 30 30 H 1.48491 * 109.47427 * 240.00129 * 27 25 23 31 31 H 1.08997 * 109.47687 * 298.30629 * 1 2 3 32 32 H 1.09006 * 109.47538 * 58.30770 * 1 2 3 33 33 H 1.08998 * 109.47206 * 178.30788 * 1 2 3 34 34 H 1.08997 * 109.88569 * 21.13860 * 4 2 1 35 35 H 1.09008 * 109.88164 * 259.97634 * 4 2 1 36 36 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 37 37 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 38 38 H 1.08001 * 125.87491 * 359.95429 * 10 9 8 39 39 H 1.08999 * 109.72367 * 283.85123 * 14 13 9 40 40 H 1.09000 * 109.72402 * 44.51610 * 14 13 9 41 41 H 1.09001 * 109.50698 * 288.61714 * 15 14 13 42 42 H 1.09005 * 109.51958 * 168.46262 * 15 14 13 43 43 H 1.09005 * 109.45744 * 170.55047 * 16 15 14 44 44 H 1.09002 * 109.46253 * 50.60096 * 16 15 14 45 45 H 1.08998 * 109.58178 * 282.44571 * 17 12 11 46 46 H 1.08996 * 109.58494 * 42.72047 * 17 12 11 47 47 H 1.09004 * 110.36778 * 94.48512 * 18 5 4 48 48 H 1.09006 * 110.36423 * 216.80164 * 18 5 4 49 49 H 1.09008 * 109.46892 * 192.97587 * 21 19 18 50 50 H 1.09002 * 109.47603 * 312.97573 * 21 19 18 51 51 H 0.96998 * 119.99963 * 359.97438 * 22 21 19 52 52 H 0.97004 * 119.99436 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2445 -1.5495 0.7415 6 6 3.9924 -2.3810 1.4936 7 8 4.9384 -2.9584 1.0011 8 6 3.6493 -2.5982 2.9449 9 6 4.6280 -3.5699 3.5524 10 6 4.4419 -4.9512 3.6898 11 7 5.5097 -5.4546 4.2583 12 7 6.4022 -4.4100 4.5083 13 6 5.8357 -3.2638 4.0656 14 6 6.4841 -1.9046 4.1551 15 6 7.6478 -1.9939 5.1512 16 6 8.5062 -3.2167 4.8146 17 6 7.7250 -4.4957 5.1342 18 6 3.4665 -1.2465 -0.6841 19 6 2.0789 -0.7974 -1.2125 20 1 1.4448 -1.6554 -1.4353 21 6 2.2277 0.1041 -2.4398 22 7 2.6328 -0.7038 -3.5928 23 6 2.8280 -0.1091 -4.8108 24 1 2.6830 0.9555 -4.9214 25 6 3.2123 -0.8744 -5.9032 26 7 3.3886 -2.1718 -5.7685 27 14 3.4780 -0.0633 -7.5649 28 1 3.2164 1.3941 -7.4517 29 1 4.8799 -0.2815 -8.0037 30 1 2.5497 -0.6576 -8.5599 31 1 -0.3634 0.4873 0.9047 32 1 -0.3634 0.5399 -0.8744 33 1 -0.3633 -1.0272 -0.0303 34 1 1.3130 -1.4732 1.5799 35 1 2.3740 -0.0990 1.9979 36 1 3.7025 -1.6483 3.4769 37 1 2.6400 -3.0023 3.0230 38 1 3.5693 -5.5063 3.3785 39 1 6.8610 -1.6116 3.1752 40 1 5.7563 -1.1721 4.5041 41 1 7.2541 -2.0926 6.1628 42 1 8.2559 -1.0919 5.0826 43 1 9.4209 -3.1923 5.4069 44 1 8.7599 -3.2016 3.7546 45 1 7.6125 -4.5950 6.2138 46 1 8.2596 -5.3606 4.7416 47 1 4.1947 -0.4426 -0.7922 48 1 3.8032 -2.1380 -1.2134 49 1 1.2747 0.5886 -2.6524 50 1 2.9853 0.8629 -2.2436 51 1 2.7626 -1.6599 -3.4935 52 1 3.6575 -2.7065 -6.5318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754817724.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:43 Heat of formation + Delta-G solvation = 15.674191 kcal Electronic energy + Delta-G solvation = -30569.137518 eV Core-core repulsion = 26568.689084 eV Total energy + Delta-G solvation = -4000.448434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.56870 -41.03965 -39.00250 -37.41001 -36.43120 -34.43535 -34.07450 -33.00981 -31.63930 -31.22115 -30.46039 -27.92829 -27.12884 -26.46134 -25.15994 -24.76350 -23.16697 -22.50363 -21.62364 -21.15204 -20.24661 -19.62756 -19.08974 -17.94932 -17.49942 -17.21320 -16.68385 -16.57211 -16.23093 -15.64389 -15.43166 -15.37621 -15.25644 -15.14294 -14.97119 -14.86880 -14.66913 -14.28354 -13.99884 -13.94793 -13.54175 -13.42443 -13.31428 -13.18947 -12.92772 -12.89359 -12.79130 -12.71629 -12.39130 -12.08045 -11.99812 -11.95083 -11.93565 -11.87841 -11.74451 -11.54701 -11.46927 -11.31932 -10.95981 -10.85812 -10.14594 -9.58888 -9.28233 -9.00369 -7.95368 -5.24735 0.91666 1.45977 1.47520 1.57546 1.58619 1.68569 1.73379 2.23768 2.55438 3.37760 3.42805 3.47717 3.61399 3.64452 3.77345 3.80004 3.82534 3.94038 4.06217 4.19839 4.23905 4.29303 4.32456 4.37662 4.46309 4.47413 4.55022 4.57767 4.59655 4.66604 4.76084 4.79278 4.83742 4.85735 4.90297 4.91942 4.95212 5.01443 5.05940 5.09662 5.22009 5.24459 5.24617 5.27124 5.32289 5.43419 5.49374 5.58663 5.70377 6.13997 6.26359 6.65427 6.76092 7.27615 7.32091 8.08876 8.30312 9.28609 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.002260 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.115428 B =12385.329862 C =13396.373735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.097 0.903 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.518 3.482 7 O -0.591 6.591 8 C -0.038 4.038 9 C -0.240 4.240 10 C 0.046 3.954 11 N -0.337 5.337 12 N -0.378 5.378 13 C 0.097 3.903 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.134 4.134 17 C 0.123 3.877 18 C 0.121 3.879 19 C -0.092 4.092 20 H 0.072 0.928 21 C 0.165 3.835 22 N -0.748 5.748 23 C -0.241 4.241 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.973 5.973 27 Si 0.975 3.025 28 H -0.262 1.262 29 H -0.296 1.296 30 H -0.293 1.293 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.195 0.805 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.033 0.967 49 H 0.034 0.966 50 H 0.023 0.977 51 H 0.370 0.630 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 4.933 31.140 31.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.115 0.885 4 C -0.018 4.018 5 N -0.353 5.353 6 C 0.309 3.691 7 O -0.472 6.472 8 C -0.078 4.078 9 C -0.252 4.252 10 C -0.139 4.139 11 N -0.158 5.158 12 N -0.161 5.161 13 C -0.031 4.031 14 C -0.102 4.102 15 C -0.157 4.157 16 C -0.172 4.172 17 C 0.003 3.997 18 C -0.003 4.003 19 C -0.112 4.112 20 H 0.090 0.910 21 C 0.038 3.962 22 N -0.391 5.391 23 C -0.373 4.373 24 H 0.098 0.902 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.186 1.186 29 H -0.224 1.224 30 H -0.220 1.220 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.211 0.789 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.140 0.860 44 H 0.075 0.925 45 H 0.118 0.882 46 H 0.105 0.895 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.041 0.959 51 H 0.202 0.798 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.238 3.626 31.362 31.650 hybrid contribution 0.117 -0.163 -2.170 2.180 sum 2.355 3.463 29.191 29.490 Atomic orbital electron populations 1.21734 0.92200 1.02371 1.03080 1.22223 0.97539 0.99393 0.91518 0.88490 1.22444 0.86803 0.95265 0.97303 1.48698 1.31162 1.44953 1.10451 1.21264 0.81145 0.77024 0.89689 1.90709 1.31410 1.49924 1.75118 1.19881 0.99517 1.00312 0.88133 1.19305 0.98306 0.94683 1.12867 1.24155 0.97625 0.94156 0.98001 1.77154 1.01898 1.12746 1.23970 1.48844 1.15585 1.04096 1.47564 1.21235 0.93537 0.90914 0.97413 1.20610 0.98635 0.89822 1.01088 1.21680 0.95955 0.99054 0.99017 1.21993 0.99759 0.92492 1.02946 1.22094 0.77948 1.01013 0.98607 1.22038 0.97718 0.98910 0.81599 1.22517 0.94767 0.98801 0.95066 0.90977 1.20758 0.97120 0.92886 0.85402 1.42657 1.82702 1.07436 1.06282 1.19705 1.36795 0.93174 0.87593 0.90198 1.25634 1.03419 0.96195 1.02045 1.69854 1.55743 1.05939 1.30863 0.85046 0.76639 0.78242 0.79685 1.18563 1.22390 1.22008 0.89478 0.92833 0.92662 0.88948 0.87940 0.85443 0.85700 0.78860 0.90889 0.86919 0.90037 0.88222 0.85997 0.92458 0.88199 0.89542 0.92488 0.94802 0.94825 0.95889 0.79823 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.13 71.98 0.66 -1.49 16 2 C -0.09 -1.69 3.01 -9.61 -0.03 -1.72 16 3 H 0.10 1.72 8.04 -2.39 -0.02 1.70 16 4 C 0.10 1.66 6.08 86.73 0.53 2.18 16 5 N -0.62 -16.39 3.32 -811.34 -2.70 -19.09 16 6 C 0.52 14.98 7.84 87.66 0.69 15.67 16 7 O -0.59 -24.20 16.29 -3.04 -0.05 -24.25 16 8 C -0.04 -0.70 5.18 29.10 0.15 -0.55 16 9 C -0.24 -5.78 4.59 -20.23 -0.09 -5.88 16 10 C 0.05 1.20 11.97 85.25 1.02 2.22 16 11 N -0.34 -9.78 12.62 -56.80 -0.72 -10.50 16 12 N -0.38 -9.16 4.04 -334.11 -1.35 -10.51 16 13 C 0.10 2.22 6.59 41.27 0.27 2.49 16 14 C -0.06 -0.98 6.02 30.04 0.18 -0.80 16 15 C -0.12 -1.16 5.97 30.79 0.18 -0.98 16 16 C -0.13 -1.49 5.93 30.72 0.18 -1.30 16 17 C 0.12 1.93 7.28 86.45 0.63 2.56 16 18 C 0.12 4.17 6.33 86.93 0.55 4.72 16 19 C -0.09 -2.84 2.51 -9.32 -0.02 -2.86 16 20 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 21 C 0.16 6.37 5.72 86.38 0.49 6.87 16 22 N -0.75 -38.89 5.55 -343.44 -1.91 -40.80 16 23 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 24 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 25 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 26 N -0.97 -62.08 13.06 21.65 0.28 -61.79 16 27 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 28 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 29 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 30 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 34 H 0.09 1.12 7.82 -2.39 -0.02 1.10 16 35 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.13 1.46 7.89 -2.38 -0.02 1.44 16 37 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 1.18 7.94 -2.39 -0.02 1.16 16 41 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 42 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 45 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 47 H 0.06 2.06 7.91 -2.39 -0.02 2.04 16 48 H 0.03 1.47 8.03 -2.38 -0.02 1.45 16 49 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 50 H 0.02 0.89 7.96 -2.39 -0.02 0.87 16 51 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 52 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -85.80 416.65 2.48 -83.33 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.19 Total: 30.36 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.70 Total: 3.97 kcal Atomic # 7 Polarization: -136.30 SS G_CDS: -6.39 Total: -142.68 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.05 Total: -24.25 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -85.80 2.48 -83.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754817724.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.001 kcal (2) G-P(sol) polarization free energy of solvation -85.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds