Wall clock time and date at job start Wed Apr 1 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47199 * 2 1 4 4 C 1.50704 * 109.47056 * 119.99281 * 2 1 3 5 5 H 1.07999 * 119.99507 * 119.99667 * 4 2 1 6 6 C 1.37879 * 120.00328 * 300.00785 * 4 2 1 7 7 N 1.31519 * 119.99771 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00096 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47251 * 89.99490 * 8 6 4 10 10 H 1.48501 * 109.46977 * 209.99457 * 8 6 4 11 11 H 1.48504 * 109.47165 * 329.99467 * 8 6 4 12 12 N 1.46503 * 109.47372 * 239.99375 * 2 1 3 13 13 C 1.46494 * 119.99840 * 300.00353 * 12 2 1 14 14 C 1.34771 * 119.99689 * 119.99967 * 12 2 1 15 15 O 1.21600 * 120.00092 * 0.02562 * 14 12 2 16 16 N 1.34770 * 119.99834 * 180.02562 * 14 12 2 17 17 C 1.40213 * 119.99981 * 174.37242 * 16 14 12 18 18 C 1.38649 * 120.09933 * 335.23949 * 17 16 14 19 19 C 1.38239 * 120.00901 * 180.02562 * 18 17 16 20 20 C 1.38280 * 120.19378 * 359.97438 * 19 18 17 21 21 C 1.38227 * 120.19119 * 0.02562 * 20 19 18 22 22 C 1.38713 * 119.99451 * 359.72333 * 21 20 19 23 23 N 1.39918 * 120.09845 * 180.27252 * 22 21 20 24 24 C 1.46957 * 111.00136 * 64.07792 * 23 22 21 25 25 C 1.53049 * 109.36755 * 176.80901 * 24 23 22 26 26 N 1.46956 * 109.36202 * 58.40072 * 25 24 23 27 27 C 1.46898 * 111.00083 * 176.81189 * 26 25 24 28 28 C 1.46954 * 110.88189 * 300.67796 * 26 25 24 29 29 C 1.46956 * 111.00044 * 300.27697 * 23 22 21 30 30 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47419 * 300.00316 * 1 2 3 32 32 H 1.09004 * 109.46880 * 60.00368 * 1 2 3 33 33 H 0.97000 * 119.99571 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47230 * 90.00191 * 13 12 2 35 35 H 1.08997 * 109.46575 * 209.99784 * 13 12 2 36 36 H 1.08994 * 109.47318 * 329.99354 * 13 12 2 37 37 H 0.96999 * 120.00568 * 354.37412 * 16 14 12 38 38 H 1.08006 * 119.99023 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.90182 * 179.97438 * 19 18 17 40 40 H 1.07997 * 119.90455 * 180.02562 * 20 19 18 41 41 H 1.07999 * 120.00304 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.49012 * 296.77736 * 24 23 22 43 43 H 1.08997 * 109.48869 * 56.84300 * 24 23 22 44 44 H 1.08996 * 109.48868 * 298.43656 * 25 24 23 45 45 H 1.08997 * 109.49141 * 178.36428 * 25 24 23 46 46 H 1.09002 * 109.47570 * 183.79867 * 27 26 25 47 47 H 1.09001 * 109.47124 * 303.79821 * 27 26 25 48 48 H 1.08999 * 109.47037 * 63.80115 * 27 26 25 49 49 H 1.09002 * 109.49249 * 299.35559 * 28 26 25 50 50 H 1.09006 * 109.51019 * 179.29459 * 28 26 25 51 51 H 1.09001 * 109.49060 * 303.15644 * 29 23 22 52 52 H 1.09000 * 109.48820 * 63.20286 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.6295 -0.5456 4.4125 10 1 1.3429 -0.9489 5.1121 11 1 2.4857 -2.5660 3.7122 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0832 15 8 3.0873 1.1283 -1.8906 16 7 3.2421 -0.6710 -3.1838 17 6 3.9482 0.0399 -4.1646 18 6 3.7647 1.4075 -4.2994 19 6 4.4615 2.1065 -5.2674 20 6 5.3430 1.4457 -6.1032 21 6 5.5322 0.0824 -5.9759 22 6 4.8411 -0.6258 -5.0039 23 7 5.0352 -2.0049 -4.8694 24 6 6.4170 -2.3058 -4.4697 25 6 6.5667 -3.8139 -4.2564 26 7 6.2151 -4.5187 -5.4971 27 6 6.4189 -5.9667 -5.3559 28 6 4.8333 -4.2180 -5.8968 29 6 4.6836 -2.7097 -6.1101 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.7092 1.1619 3.4844 34 1 0.7376 -2.1445 -1.9992 35 1 2.4629 -2.5819 -1.9861 36 1 1.5296 -2.5969 -0.4706 37 1 3.0767 -1.6200 -3.2975 38 1 3.0767 1.9267 -3.6486 39 1 4.3169 3.1717 -5.3712 40 1 5.8852 1.9965 -6.8575 41 1 6.2211 -0.4306 -6.6305 42 1 7.1013 -1.9796 -5.2528 43 1 6.6493 -1.7826 -3.5422 44 1 5.9021 -4.1356 -3.4546 45 1 7.5981 -4.0427 -3.9881 46 1 6.2160 -6.4568 -6.3081 47 1 7.4496 -6.1613 -5.0595 48 1 5.7423 -6.3563 -4.5953 49 1 4.1489 -4.5442 -5.1136 50 1 4.6006 -4.7412 -6.8243 51 1 3.6522 -2.4810 -6.3785 52 1 5.3480 -2.3878 -6.9120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086162749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:36 Heat of formation + Delta-G solvation = 35.616614 kcal Electronic energy + Delta-G solvation = -31709.530840 eV Core-core repulsion = 27709.947174 eV Total energy + Delta-G solvation = -3999.583666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.68388 -39.52161 -38.16497 -35.65699 -35.28083 -34.25667 -32.75748 -31.18614 -30.31423 -29.92492 -28.65085 -27.24521 -26.11144 -25.21308 -24.13682 -23.81590 -23.05004 -21.77591 -20.85021 -19.85159 -19.01996 -17.94728 -17.09877 -16.81579 -16.18712 -15.56033 -15.46850 -15.22131 -15.11309 -15.01071 -14.93561 -14.70033 -14.33805 -13.91873 -13.72714 -13.37215 -13.21604 -12.84014 -12.77755 -12.52909 -12.46489 -12.38850 -11.97077 -11.84402 -11.61345 -11.56994 -11.51201 -11.41656 -11.17022 -11.04555 -10.91133 -10.87104 -10.67744 -10.25702 -10.16613 -10.11427 -9.25896 -9.14504 -8.76884 -8.61482 -8.53519 -8.42091 -7.85084 -7.44450 -6.07285 -4.14948 1.40485 1.58544 3.23748 3.27346 3.33967 3.36561 3.59322 3.66211 3.70238 4.11295 4.36652 4.57763 4.61491 4.75272 4.91661 5.01137 5.07135 5.10916 5.17869 5.23598 5.24239 5.26531 5.29644 5.39308 5.53316 5.56038 5.59963 5.63753 5.66113 5.67916 5.83418 5.84920 5.98001 6.08336 6.26274 6.37591 6.45462 6.63637 6.67790 6.70652 6.73320 6.81577 6.83589 6.84332 7.03870 7.07578 7.21372 7.47672 7.49923 7.69339 7.86180 8.08023 8.22155 8.65943 8.85988 9.22907 9.52012 10.98053 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.003259 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.942551 B = 8589.301237 C =10263.376573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.273 3.727 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.602 5.602 13 C 0.085 3.915 14 C 0.695 3.305 15 O -0.580 6.580 16 N -0.680 5.680 17 C 0.213 3.787 18 C -0.132 4.132 19 C -0.097 4.097 20 C -0.146 4.146 21 C -0.125 4.125 22 C 0.035 3.965 23 N -0.499 5.499 24 C 0.065 3.935 25 C 0.056 3.944 26 N -0.546 5.546 27 C 0.025 3.975 28 C 0.056 3.944 29 C 0.061 3.939 30 H 0.029 0.971 31 H 0.094 0.906 32 H 0.011 0.989 33 H 0.263 0.737 34 H 0.043 0.957 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.409 0.591 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.027 0.973 49 H 0.044 0.956 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.837 -9.502 -19.248 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.336 5.336 13 C -0.059 4.059 14 C 0.397 3.603 15 O -0.458 6.458 16 N -0.327 5.327 17 C 0.114 3.886 18 C -0.153 4.153 19 C -0.116 4.116 20 C -0.166 4.166 21 C -0.145 4.145 22 C -0.062 4.062 23 N -0.221 5.221 24 C -0.062 4.062 25 C -0.072 4.072 26 N -0.271 5.271 27 C -0.123 4.123 28 C -0.072 4.072 29 C -0.066 4.066 30 H 0.048 0.952 31 H 0.112 0.888 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.062 0.938 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.848 -8.626 -18.807 22.129 hybrid contribution 0.299 -1.132 0.851 1.447 sum 8.147 -9.758 -17.956 22.000 Atomic orbital electron populations 1.22098 0.98176 0.99385 1.00821 1.18888 0.90645 0.94325 0.78908 0.91706 1.21332 1.31772 1.13063 0.90327 0.92305 1.24878 0.94929 0.95003 0.98910 1.69881 1.36321 1.22586 1.23759 0.86496 0.78661 0.79824 0.82395 1.20614 1.21121 1.19976 1.47607 1.50526 1.11546 1.23927 1.21536 0.98348 0.83527 1.02522 1.16027 0.79629 0.85078 0.79564 1.90828 1.62562 1.15583 1.76858 1.42926 1.57166 1.13062 1.19510 1.17480 0.91245 0.91259 0.88616 1.21562 1.01979 0.92836 0.98916 1.21084 0.96084 0.99782 0.94653 1.20877 1.00761 0.94079 1.00900 1.21256 0.99848 0.94870 0.98527 1.18295 0.99382 0.88809 0.99688 1.59611 1.24435 1.05485 1.32595 1.22189 0.87670 0.95191 1.01118 1.22203 1.01049 0.93360 0.90632 1.62176 1.23653 1.08595 1.32649 1.22342 1.01406 0.87509 1.01059 1.22194 0.88739 0.95599 1.00690 1.22236 1.01218 0.92760 0.90401 0.95209 0.88756 0.96977 0.92676 0.93877 0.93453 0.89742 0.75354 0.82893 0.85980 0.86544 0.86492 0.93530 0.89936 0.93641 0.90144 0.91400 0.91379 0.95433 0.93750 0.90224 0.90125 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.15 16 2 C 0.27 6.95 2.64 -69.08 -0.18 6.77 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.18 7.99 -34.44 -0.28 -14.45 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.60 -12.94 2.75 -181.01 -0.50 -13.44 16 13 C 0.08 1.44 9.25 59.84 0.55 1.99 16 14 C 0.69 14.85 8.09 -86.93 -0.70 14.15 16 15 O -0.58 -14.36 12.84 5.28 0.07 -14.30 16 16 N -0.68 -11.59 5.15 -14.07 -0.07 -11.66 16 17 C 0.21 3.44 6.45 -83.42 -0.54 2.90 16 18 C -0.13 -2.18 8.72 -39.43 -0.34 -2.53 16 19 C -0.10 -1.31 10.04 -39.57 -0.40 -1.71 16 20 C -0.15 -1.74 10.04 -39.57 -0.40 -2.13 16 21 C -0.12 -1.50 8.64 -39.41 -0.34 -1.84 16 22 C 0.04 0.47 4.74 -83.54 -0.40 0.08 16 23 N -0.50 -5.84 4.02 -170.76 -0.69 -6.53 16 24 C 0.07 0.72 5.36 -3.77 -0.02 0.70 16 25 C 0.06 0.54 5.62 -3.77 -0.02 0.52 16 26 N -0.55 -5.01 4.97 -242.75 -1.21 -6.21 16 27 C 0.03 0.18 9.60 60.06 0.58 0.76 16 28 C 0.06 0.49 5.62 -3.76 -0.02 0.47 16 29 C 0.06 0.60 5.31 -3.76 -0.02 0.58 16 30 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.67 6.29 -51.93 -0.33 0.35 16 36 H 0.08 1.51 7.02 -51.93 -0.36 1.15 16 37 H 0.41 6.12 5.98 -40.82 -0.24 5.88 16 38 H 0.15 2.93 5.79 -52.48 -0.30 2.63 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.21 7.06 -52.49 -0.37 0.84 16 42 H 0.05 0.51 7.46 -51.93 -0.39 0.12 16 43 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 48 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 49 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 52 H 0.05 0.46 7.23 -51.93 -0.38 0.09 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -30.62 403.03 -11.46 -42.08 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.46 Total: 7.59 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -2.29 Total: 4.78 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -1.84 Total: -62.23 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.07 Total: -14.30 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.62 -11.46 -42.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086162749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.696 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds