Wall clock time and date at job start Wed Apr 1 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47199 * 2 1 4 4 C 1.50704 * 109.47056 * 119.99281 * 2 1 3 5 5 H 1.07999 * 119.99507 * 119.99667 * 4 2 1 6 6 C 1.37879 * 120.00328 * 300.00785 * 4 2 1 7 7 N 1.31519 * 119.99771 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00096 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47251 * 89.99490 * 8 6 4 10 10 H 1.48501 * 109.46977 * 209.99457 * 8 6 4 11 11 H 1.48504 * 109.47165 * 329.99467 * 8 6 4 12 12 N 1.46503 * 109.47372 * 239.99375 * 2 1 3 13 13 C 1.46494 * 119.99840 * 300.00353 * 12 2 1 14 14 C 1.34771 * 119.99689 * 119.99967 * 12 2 1 15 15 O 1.21600 * 120.00092 * 0.02562 * 14 12 2 16 16 N 1.34770 * 119.99834 * 180.02562 * 14 12 2 17 17 C 1.40213 * 119.99981 * 174.37242 * 16 14 12 18 18 C 1.38649 * 120.09933 * 335.23949 * 17 16 14 19 19 C 1.38239 * 120.00901 * 180.02562 * 18 17 16 20 20 C 1.38280 * 120.19378 * 359.97438 * 19 18 17 21 21 C 1.38227 * 120.19119 * 0.02562 * 20 19 18 22 22 C 1.38713 * 119.99451 * 359.72333 * 21 20 19 23 23 N 1.39918 * 120.09845 * 180.27252 * 22 21 20 24 24 C 1.46957 * 111.00136 * 64.07792 * 23 22 21 25 25 C 1.53049 * 109.36755 * 176.80901 * 24 23 22 26 26 N 1.46956 * 109.36202 * 58.40072 * 25 24 23 27 27 C 1.46898 * 111.00083 * 176.81189 * 26 25 24 28 28 C 1.46954 * 110.88189 * 300.67796 * 26 25 24 29 29 C 1.46956 * 111.00044 * 300.27697 * 23 22 21 30 30 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47419 * 300.00316 * 1 2 3 32 32 H 1.09004 * 109.46880 * 60.00368 * 1 2 3 33 33 H 0.97000 * 119.99571 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47230 * 90.00191 * 13 12 2 35 35 H 1.08997 * 109.46575 * 209.99784 * 13 12 2 36 36 H 1.08994 * 109.47318 * 329.99354 * 13 12 2 37 37 H 0.96999 * 120.00568 * 354.37412 * 16 14 12 38 38 H 1.08006 * 119.99023 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.90182 * 179.97438 * 19 18 17 40 40 H 1.07997 * 119.90455 * 180.02562 * 20 19 18 41 41 H 1.07999 * 120.00304 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.49012 * 296.77736 * 24 23 22 43 43 H 1.08997 * 109.48869 * 56.84300 * 24 23 22 44 44 H 1.08996 * 109.48868 * 298.43656 * 25 24 23 45 45 H 1.08997 * 109.49141 * 178.36428 * 25 24 23 46 46 H 1.09002 * 109.47570 * 183.79867 * 27 26 25 47 47 H 1.09001 * 109.47124 * 303.79821 * 27 26 25 48 48 H 1.08999 * 109.47037 * 63.80115 * 27 26 25 49 49 H 1.09002 * 109.49249 * 299.35559 * 28 26 25 50 50 H 1.09006 * 109.51019 * 179.29459 * 28 26 25 51 51 H 1.09001 * 109.49060 * 303.15644 * 29 23 22 52 52 H 1.09000 * 109.48820 * 63.20286 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.6295 -0.5456 4.4125 10 1 1.3429 -0.9489 5.1121 11 1 2.4857 -2.5660 3.7122 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0832 15 8 3.0873 1.1283 -1.8906 16 7 3.2421 -0.6710 -3.1838 17 6 3.9482 0.0399 -4.1646 18 6 3.7647 1.4075 -4.2994 19 6 4.4615 2.1065 -5.2674 20 6 5.3430 1.4457 -6.1032 21 6 5.5322 0.0824 -5.9759 22 6 4.8411 -0.6258 -5.0039 23 7 5.0352 -2.0049 -4.8694 24 6 6.4170 -2.3058 -4.4697 25 6 6.5667 -3.8139 -4.2564 26 7 6.2151 -4.5187 -5.4971 27 6 6.4189 -5.9667 -5.3559 28 6 4.8333 -4.2180 -5.8968 29 6 4.6836 -2.7097 -6.1101 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.7092 1.1619 3.4844 34 1 0.7376 -2.1445 -1.9992 35 1 2.4629 -2.5819 -1.9861 36 1 1.5296 -2.5969 -0.4706 37 1 3.0767 -1.6200 -3.2975 38 1 3.0767 1.9267 -3.6486 39 1 4.3169 3.1717 -5.3712 40 1 5.8852 1.9965 -6.8575 41 1 6.2211 -0.4306 -6.6305 42 1 7.1013 -1.9796 -5.2528 43 1 6.6493 -1.7826 -3.5422 44 1 5.9021 -4.1356 -3.4546 45 1 7.5981 -4.0427 -3.9881 46 1 6.2160 -6.4568 -6.3081 47 1 7.4496 -6.1613 -5.0595 48 1 5.7423 -6.3563 -4.5953 49 1 4.1489 -4.5442 -5.1136 50 1 4.6006 -4.7412 -6.8243 51 1 3.6522 -2.4810 -6.3785 52 1 5.3480 -2.3878 -6.9120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086162749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:35 Heat of formation + Delta-G solvation = 16.271093 kcal Electronic energy + Delta-G solvation = -31710.369725 eV Core-core repulsion = 27709.947174 eV Total energy + Delta-G solvation = -4000.422550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.92130 -40.76055 -39.20809 -37.31236 -36.22362 -35.77528 -34.65964 -31.95172 -31.60471 -31.25265 -30.02282 -28.13334 -27.61892 -27.29555 -24.92993 -24.58527 -24.37660 -22.99421 -22.26918 -20.80606 -20.51616 -19.32994 -18.61110 -18.11284 -17.84401 -17.00395 -16.66997 -16.28591 -16.14041 -16.02154 -15.95527 -15.84160 -15.63752 -15.07828 -14.98031 -14.83275 -14.41536 -14.28731 -14.09771 -13.63381 -13.55814 -13.47942 -13.25049 -13.08731 -12.92468 -12.76990 -12.71472 -12.69038 -12.58660 -12.51864 -12.28002 -12.19570 -12.08953 -11.91676 -11.77917 -11.46606 -11.18691 -10.88011 -10.51487 -9.71103 -9.57375 -9.46273 -9.30721 -8.81577 -8.14314 -6.30692 0.33103 0.45768 1.41137 1.42538 1.52170 1.75913 2.17065 2.41989 2.71158 2.90197 2.97320 3.08695 3.13781 3.84120 4.02593 4.06049 4.18744 4.19443 4.27406 4.29377 4.33586 4.36945 4.52022 4.58571 4.62360 4.64033 4.65597 4.68400 4.72418 4.81898 4.86666 4.88948 4.90070 4.93826 5.00277 5.03947 5.06316 5.06618 5.25260 5.41477 5.45991 5.54074 5.60236 5.63164 5.70595 5.85769 5.90026 5.98551 6.06596 6.08529 6.15565 6.27630 6.44004 6.76501 7.08105 7.36356 7.62741 8.90036 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.003259 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.942551 B = 8589.301237 C =10263.376573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.280 3.720 3 H 0.011 0.989 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.262 1.262 12 N -0.610 5.610 13 C 0.084 3.916 14 C 0.690 3.310 15 O -0.624 6.624 16 N -0.663 5.663 17 C 0.180 3.820 18 C -0.157 4.157 19 C -0.102 4.102 20 C -0.131 4.131 21 C -0.120 4.120 22 C 0.046 3.954 23 N -0.509 5.509 24 C 0.068 3.932 25 C 0.061 3.939 26 N -0.551 5.551 27 C 0.025 3.975 28 C 0.059 3.941 29 C 0.063 3.937 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.418 0.582 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.024 0.976 49 H 0.037 0.963 50 H 0.098 0.902 51 H 0.082 0.918 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.342 -11.923 -21.398 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.177 3.823 3 H 0.029 0.971 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.186 1.186 12 N -0.344 5.344 13 C -0.059 4.059 14 C 0.392 3.608 15 O -0.505 6.505 16 N -0.310 5.310 17 C 0.082 3.918 18 C -0.178 4.178 19 C -0.120 4.120 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.051 4.051 23 N -0.231 5.231 24 C -0.059 4.059 25 C -0.068 4.068 26 N -0.276 5.276 27 C -0.123 4.123 28 C -0.070 4.070 29 C -0.063 4.063 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.258 0.742 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.043 0.957 49 H 0.055 0.945 50 H 0.116 0.884 51 H 0.100 0.900 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.362 -11.104 -21.017 25.547 hybrid contribution -0.099 -0.346 1.383 1.429 sum 9.264 -11.450 -19.635 24.545 Atomic orbital electron populations 1.21879 0.97032 1.00127 0.99940 1.18461 0.91414 0.91969 0.80415 0.97089 1.21577 1.31889 1.13127 0.91155 0.92224 1.25710 0.95039 0.95657 1.01912 1.70022 1.37235 1.23834 1.24451 0.85465 0.77765 0.79202 0.78632 1.20947 1.20434 1.18583 1.47469 1.50751 1.13209 1.22982 1.21731 1.00455 0.80834 1.02835 1.16192 0.79563 0.84664 0.80409 1.90803 1.64077 1.17658 1.78010 1.42575 1.56827 1.13220 1.18427 1.17720 0.93056 0.91412 0.89576 1.21404 1.02916 0.93490 1.00029 1.21291 0.95954 1.00686 0.94103 1.21260 0.99294 0.94212 1.00325 1.21569 0.99417 0.95056 0.97984 1.18357 0.98151 0.89773 0.98794 1.59582 1.24958 1.04598 1.33992 1.22143 0.87330 0.96011 1.00367 1.22137 1.01464 0.92456 0.90693 1.62211 1.23774 1.09606 1.31991 1.22390 1.01772 0.86389 1.01707 1.22209 0.88474 0.94940 1.01332 1.22276 1.01396 0.93196 0.89446 0.93449 0.91172 0.96245 0.92599 0.91660 0.90677 0.90562 0.74217 0.86578 0.84326 0.83037 0.83927 0.92874 0.91831 0.94924 0.89013 0.90155 0.90739 0.95730 0.94496 0.88360 0.89953 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.97 71.98 0.65 -5.79 16 2 C 0.28 14.88 2.64 44.25 0.12 15.00 16 3 H 0.01 0.71 6.90 -2.39 -0.02 0.69 16 4 C -0.54 -29.71 7.99 25.60 0.20 -29.50 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -53.24 11.32 21.45 0.24 -53.00 16 8 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 12 N -0.61 -27.00 2.75 -844.85 -2.33 -29.33 16 13 C 0.08 2.78 9.25 127.77 1.18 3.96 16 14 C 0.69 30.88 8.09 179.06 1.45 32.33 16 15 O -0.62 -33.24 12.84 -4.03 -0.05 -33.29 16 16 N -0.66 -23.08 5.15 -316.68 -1.63 -24.71 16 17 C 0.18 5.89 6.45 38.19 0.25 6.14 16 18 C -0.16 -5.43 8.72 22.37 0.19 -5.24 16 19 C -0.10 -2.68 10.04 22.28 0.22 -2.46 16 20 C -0.13 -2.75 10.04 22.28 0.22 -2.52 16 21 C -0.12 -2.54 8.64 22.38 0.19 -2.35 16 22 C 0.05 1.17 4.74 38.26 0.18 1.36 16 23 N -0.51 -11.05 4.02 -694.18 -2.79 -13.84 16 24 C 0.07 1.40 5.36 86.31 0.46 1.86 16 25 C 0.06 1.07 5.62 86.31 0.49 1.56 16 26 N -0.55 -8.63 4.97 -921.94 -4.58 -13.21 16 27 C 0.03 0.30 9.60 127.69 1.23 1.53 16 28 C 0.06 0.87 5.62 86.31 0.49 1.35 16 29 C 0.06 1.07 5.31 86.31 0.46 1.53 16 30 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 31 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 32 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.03 6.29 -2.39 -0.02 2.02 16 36 H 0.08 2.66 7.02 -2.39 -0.02 2.65 16 37 H 0.42 12.37 5.98 -92.71 -0.55 11.82 16 38 H 0.12 4.88 5.79 -2.91 -0.02 4.86 16 39 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 40 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.14 2.34 7.06 -2.91 -0.02 2.32 16 42 H 0.05 1.02 7.46 -2.39 -0.02 1.00 16 43 H 0.06 1.53 8.13 -2.39 -0.02 1.52 16 44 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 46 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 48 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 51 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 52 H 0.05 0.85 7.23 -2.39 -0.02 0.83 16 Total: -1.00 -70.23 403.03 -0.33 -70.56 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.36 Total: 31.26 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 8.43 Total: 20.12 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -11.09 Total: -134.08 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.05 Total: -33.29 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.23 -0.33 -70.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086162749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.831 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds