Wall clock time and date at job start Wed Apr 1 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09011 * 109.46652 * 2 1 4 4 C 1.53000 * 109.47499 * 119.99823 * 2 1 3 5 5 N 1.46891 * 109.47520 * 173.65645 * 4 2 1 6 6 C 1.46953 * 111.00459 * 199.87393 * 5 4 2 7 7 C 1.53047 * 109.36779 * 176.81007 * 6 5 4 8 8 N 1.46963 * 109.36379 * 58.40082 * 7 6 5 9 9 C 1.46896 * 110.99690 * 176.81158 * 8 7 6 10 10 C 1.46951 * 110.87763 * 300.67883 * 8 7 6 11 11 C 1.46958 * 111.00261 * 76.07069 * 5 4 2 12 12 N 1.46498 * 109.47032 * 240.00351 * 2 1 3 13 13 C 1.34780 * 120.00352 * 85.33452 * 12 2 1 14 14 O 1.21579 * 119.99731 * 359.97438 * 13 12 2 15 15 N 1.34770 * 119.99858 * 180.02562 * 13 12 2 16 16 C 1.39247 * 119.99902 * 175.78295 * 15 13 12 17 17 C 1.39476 * 119.83130 * 216.05401 * 16 15 13 18 18 C 1.36379 * 120.16749 * 179.75711 * 17 16 15 19 19 C 1.40874 * 119.82597 * 0.50968 * 18 17 16 20 20 C 1.41156 * 120.16324 * 179.71644 * 19 18 17 21 21 H 1.07997 * 119.99952 * 160.68374 * 20 19 18 22 22 C 1.39899 * 119.99903 * 340.68167 * 20 19 18 23 23 N 1.30870 * 120.00233 * 327.87201 * 22 20 19 24 24 Si 1.86798 * 119.99499 * 147.87114 * 22 20 19 25 25 H 1.48501 * 109.47350 * 94.99281 * 24 22 20 26 26 H 1.48507 * 109.46861 * 214.98819 * 24 22 20 27 27 H 1.48493 * 109.47620 * 334.98698 * 24 22 20 28 28 C 1.40868 * 119.67421 * 359.74505 * 19 18 17 29 29 C 1.36383 * 119.82702 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.47211 * 59.99704 * 1 2 3 31 31 H 1.08994 * 109.46909 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46952 * 299.99993 * 1 2 3 33 33 H 1.09001 * 109.46678 * 53.65307 * 4 2 1 34 34 H 1.08999 * 109.46837 * 293.66216 * 4 2 1 35 35 H 1.09003 * 109.48700 * 296.78189 * 6 5 4 36 36 H 1.08997 * 109.48743 * 56.84234 * 6 5 4 37 37 H 1.08999 * 109.49128 * 298.43486 * 7 6 5 38 38 H 1.09001 * 109.50652 * 178.37807 * 7 6 5 39 39 H 1.09009 * 109.46758 * 183.79827 * 9 8 7 40 40 H 1.08998 * 109.47139 * 303.79342 * 9 8 7 41 41 H 1.08994 * 109.47275 * 63.80044 * 9 8 7 42 42 H 1.08995 * 109.49355 * 299.34963 * 10 8 7 43 43 H 1.09007 * 109.50494 * 179.29829 * 10 8 7 44 44 H 1.09007 * 109.48982 * 303.15983 * 11 5 4 45 45 H 1.09001 * 109.48754 * 63.20134 * 11 5 4 46 46 H 0.97001 * 119.99916 * 265.32682 * 12 2 1 47 47 H 0.96997 * 120.00560 * 355.77903 * 15 13 12 48 48 H 1.08000 * 119.91834 * 0.02562 * 17 16 15 49 49 H 1.07998 * 120.08859 * 180.25019 * 18 17 16 50 50 H 0.97003 * 120.00147 * 180.02562 * 23 22 20 51 51 H 1.07995 * 120.08703 * 179.97438 * 28 19 18 52 52 H 1.07992 * 119.91222 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5010 -0.8551 1.1752 6 6 3.9788 -1.9166 2.0721 7 6 5.4918 -2.0779 1.9069 8 7 6.1536 -0.8007 2.2077 9 6 7.6146 -0.9347 2.1336 10 6 5.6759 0.2608 1.3107 11 6 4.1629 0.4220 1.4759 12 7 2.0183 -0.6905 -1.1962 13 6 2.1535 -0.0165 -2.3555 14 8 1.8697 1.1645 -2.4087 15 7 2.6022 -0.6520 -3.4560 16 6 2.6587 0.0206 -4.6740 17 6 2.3766 -0.6618 -5.8572 18 6 2.4251 -0.0086 -7.0534 19 6 2.7717 1.3562 -7.0928 20 6 2.8299 2.0378 -8.3276 21 1 2.7837 3.1166 -8.3516 22 6 2.9473 1.3160 -9.5202 23 7 3.6037 0.1839 -9.5379 24 14 2.1672 1.9681 -11.0872 25 1 3.1780 2.7305 -11.8632 26 1 1.6711 0.8310 -11.9034 27 1 1.0324 2.8609 -10.7408 28 6 3.0605 2.0374 -5.8941 29 6 3.0022 1.3721 -4.7049 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.5870 -1.7108 1.3078 34 1 1.7724 -0.1460 2.1355 35 1 3.7520 -1.6499 3.1044 36 1 3.4836 -2.8547 1.8214 37 1 5.7164 -2.3712 0.8815 38 1 5.8530 -2.8449 2.5920 39 1 8.0810 0.0062 2.4260 40 1 7.9414 -1.7269 2.8071 41 1 7.9054 -1.1825 1.1129 42 1 5.9027 -0.0059 0.2785 43 1 6.1711 1.1991 1.5611 44 1 3.8020 1.1890 0.7906 45 1 3.9380 0.7156 2.5013 46 1 2.2445 -1.6329 -1.1539 47 1 2.8858 -1.5779 -3.3998 48 1 2.1148 -1.7092 -5.8257 49 1 2.2024 -0.5373 -7.9684 50 1 3.6855 -0.3164 -10.3649 51 1 3.3273 3.0836 -5.9166 52 1 3.2238 1.8928 -3.7851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106583665.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:04 Heat of formation + Delta-G solvation = 8.218418 kcal Electronic energy + Delta-G solvation = -30504.163287 eV Core-core repulsion = 26503.391546 eV Total energy + Delta-G solvation = -4000.771741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.03123 -39.37678 -37.54286 -36.44695 -34.58843 -34.08208 -32.97149 -31.23713 -30.86723 -29.43806 -28.86158 -28.54324 -25.64117 -24.81732 -23.98421 -23.34846 -21.96675 -21.02960 -20.43573 -20.07841 -19.89491 -17.89355 -17.22544 -16.71802 -16.41284 -15.70279 -15.32076 -15.21826 -15.12602 -14.84186 -14.81519 -14.70304 -14.23071 -13.94267 -13.75708 -13.23079 -13.01469 -12.81235 -12.68446 -12.62115 -12.43125 -12.27043 -12.01194 -11.96021 -11.84689 -11.79023 -11.52448 -11.41500 -11.28132 -11.08395 -11.01655 -10.89078 -10.67481 -10.46027 -10.10984 -9.61828 -9.46310 -9.06198 -8.75315 -8.68331 -8.57089 -8.53753 -7.44571 -7.03288 -6.79987 -4.17902 2.74611 3.07679 3.09034 3.18462 3.18841 3.30592 3.55535 3.63952 3.88189 3.94094 4.54214 4.57092 4.59470 4.73638 4.78598 4.90443 5.00096 5.07225 5.11543 5.18790 5.24119 5.28532 5.29991 5.34646 5.48116 5.49744 5.56344 5.60752 5.66443 5.74010 5.77450 5.78738 6.00223 6.20692 6.28102 6.54253 6.59955 6.64368 6.78311 6.83876 6.88780 6.90908 7.01944 7.08220 7.22004 7.40365 7.46817 7.68700 8.00337 8.07991 8.13549 8.35777 8.64653 8.68649 8.92956 9.02078 9.30654 10.08860 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002156 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.884734 B =12982.102271 C =13878.373708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.084 0.916 4 C 0.047 3.953 5 N -0.534 5.534 6 C 0.058 3.942 7 C 0.056 3.944 8 N -0.546 5.546 9 C 0.025 3.975 10 C 0.056 3.944 11 C 0.058 3.942 12 N -0.732 5.732 13 C 0.697 3.303 14 O -0.586 6.586 15 N -0.667 5.667 16 C 0.003 3.997 17 C -0.107 4.107 18 C -0.172 4.172 19 C 0.108 3.892 20 C -0.466 4.466 21 H 0.080 0.920 22 C 0.087 3.913 23 N -0.772 5.772 24 Si 0.895 3.105 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.258 1.258 28 C -0.225 4.225 29 C -0.068 4.068 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.027 0.973 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.392 0.608 47 H 0.389 0.611 48 H 0.087 0.913 49 H 0.109 0.891 50 H 0.282 0.718 51 H 0.092 0.908 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 -7.545 21.940 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.102 0.898 4 C -0.082 4.082 5 N -0.258 5.258 6 C -0.070 4.070 7 C -0.072 4.072 8 N -0.271 5.271 9 C -0.124 4.124 10 C -0.072 4.072 11 C -0.070 4.070 12 N -0.387 5.387 13 C 0.398 3.602 14 O -0.464 6.464 15 N -0.313 5.313 16 C -0.089 4.089 17 C -0.128 4.128 18 C -0.192 4.192 19 C 0.106 3.894 20 C -0.494 4.494 21 H 0.098 0.902 22 C -0.134 4.134 23 N -0.396 5.396 24 Si 0.719 3.281 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.181 1.181 28 C -0.245 4.245 29 C -0.088 4.088 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.225 0.775 47 H 0.221 0.779 48 H 0.105 0.895 49 H 0.127 0.873 50 H 0.093 0.907 51 H 0.111 0.889 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.352 -6.646 21.768 22.800 hybrid contribution 0.002 -0.800 -0.741 1.090 sum 1.354 -7.446 21.027 22.347 Atomic orbital electron populations 1.22192 0.95521 1.01909 1.02656 1.20627 0.92995 0.97144 0.82898 0.89782 1.22461 0.87649 1.01134 0.96913 1.62059 1.04925 1.06290 1.52571 1.22163 0.94797 0.95164 0.94895 1.22161 0.93679 0.91310 1.00068 1.62190 1.05724 1.06273 1.52922 1.22341 0.87473 1.02413 1.00125 1.22161 0.94902 0.95001 0.95119 1.22186 0.93452 0.91551 0.99772 1.44881 1.72256 1.13094 1.08517 1.15999 0.78521 0.85370 0.80326 1.90879 1.57378 1.14085 1.84063 1.42048 1.67103 1.14892 1.07247 1.16875 1.16417 0.93179 0.82471 1.20150 1.02674 0.97607 0.92366 1.20649 1.07220 0.95664 0.95626 1.17583 0.87834 0.91700 0.92311 1.19489 1.44759 0.94903 0.90218 0.90174 1.25930 0.92130 0.94146 1.01152 1.69955 1.26331 1.13646 1.29620 0.86525 0.80931 0.79852 0.80831 1.19535 1.19957 1.18148 1.20586 1.12290 0.99108 0.92497 1.20365 0.98115 0.93093 0.97226 0.91383 0.92704 0.92135 0.90389 0.93127 0.94141 0.90299 0.93812 0.90478 0.91332 0.91465 0.95395 0.93625 0.90313 0.89818 0.94094 0.77474 0.77858 0.89481 0.87256 0.90748 0.88942 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.49 37.16 0.35 -1.37 16 2 C 0.17 1.90 2.58 -67.93 -0.18 1.72 16 3 H 0.08 1.14 6.55 -51.92 -0.34 0.80 16 4 C 0.05 0.39 4.57 -3.83 -0.02 0.37 16 5 N -0.53 -4.87 4.33 -234.48 -1.02 -5.89 16 6 C 0.06 0.45 5.56 -3.77 -0.02 0.43 16 7 C 0.06 0.46 5.62 -3.77 -0.02 0.44 16 8 N -0.55 -4.98 4.97 -242.76 -1.21 -6.18 16 9 C 0.02 0.19 9.60 60.06 0.58 0.77 16 10 C 0.06 0.56 5.62 -3.77 -0.02 0.54 16 11 C 0.06 0.58 5.43 -3.77 -0.02 0.56 16 12 N -0.73 -9.42 4.77 -58.67 -0.28 -9.70 16 13 C 0.70 12.62 8.36 -86.92 -0.73 11.90 16 14 O -0.59 -13.05 13.49 5.30 0.07 -12.98 16 15 N -0.67 -12.34 5.31 -14.10 -0.07 -12.41 16 16 C 0.00 0.07 6.29 -83.57 -0.53 -0.45 16 17 C -0.11 -2.53 9.90 -39.79 -0.39 -2.93 16 18 C -0.17 -4.51 8.74 -39.25 -0.34 -4.85 16 19 C 0.11 2.98 5.60 -106.80 -0.60 2.38 16 20 C -0.47 -12.59 8.95 -37.85 -0.34 -12.93 16 21 H 0.08 2.10 8.01 -52.49 -0.42 1.68 16 22 C 0.09 2.20 4.81 -17.34 -0.08 2.12 16 23 N -0.77 -19.83 11.57 55.55 0.64 -19.19 16 24 Si 0.90 18.58 29.66 -169.99 -5.04 13.54 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 28 C -0.22 -5.91 9.74 -39.26 -0.38 -6.29 16 29 C -0.07 -1.70 8.60 -39.79 -0.34 -2.04 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 34 H 0.05 0.39 7.99 -51.93 -0.41 -0.03 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.51 8.00 -51.93 -0.42 0.10 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 39 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.94 6.93 -51.93 -0.36 0.58 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.39 4.18 8.62 -40.82 -0.35 3.83 16 47 H 0.39 5.85 8.83 -40.82 -0.36 5.49 16 48 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 49 H 0.11 2.91 6.33 -52.49 -0.33 2.57 16 50 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 51 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 52 H 0.11 2.63 6.30 -52.49 -0.33 2.30 16 LS Contribution 412.39 15.07 6.21 6.21 Total: -1.00 -31.06 412.39 -12.56 -43.62 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -8.79 Total: 12.64 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.08 Total: -9.65 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -1.93 Total: -53.37 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.04 Total: 13.54 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.06 -12.56 -43.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106583665.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.834 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds