Wall clock time and date at job start Wed Apr 1 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09011 * 109.46652 * 2 1 4 4 C 1.53000 * 109.47499 * 119.99823 * 2 1 3 5 5 N 1.46891 * 109.47520 * 173.65645 * 4 2 1 6 6 C 1.46953 * 111.00459 * 199.87393 * 5 4 2 7 7 C 1.53047 * 109.36779 * 176.81007 * 6 5 4 8 8 N 1.46963 * 109.36379 * 58.40082 * 7 6 5 9 9 C 1.46896 * 110.99690 * 176.81158 * 8 7 6 10 10 C 1.46951 * 110.87763 * 300.67883 * 8 7 6 11 11 C 1.46958 * 111.00261 * 76.07069 * 5 4 2 12 12 N 1.46498 * 109.47032 * 240.00351 * 2 1 3 13 13 C 1.34780 * 120.00352 * 85.33452 * 12 2 1 14 14 O 1.21579 * 119.99731 * 359.97438 * 13 12 2 15 15 N 1.34770 * 119.99858 * 180.02562 * 13 12 2 16 16 C 1.39247 * 119.99902 * 175.78295 * 15 13 12 17 17 C 1.39476 * 119.83130 * 216.05401 * 16 15 13 18 18 C 1.36379 * 120.16749 * 179.75711 * 17 16 15 19 19 C 1.40874 * 119.82597 * 0.50968 * 18 17 16 20 20 C 1.41156 * 120.16324 * 179.71644 * 19 18 17 21 21 H 1.07997 * 119.99952 * 160.68374 * 20 19 18 22 22 C 1.39899 * 119.99903 * 340.68167 * 20 19 18 23 23 N 1.30870 * 120.00233 * 327.87201 * 22 20 19 24 24 Si 1.86798 * 119.99499 * 147.87114 * 22 20 19 25 25 H 1.48501 * 109.47350 * 94.99281 * 24 22 20 26 26 H 1.48507 * 109.46861 * 214.98819 * 24 22 20 27 27 H 1.48493 * 109.47620 * 334.98698 * 24 22 20 28 28 C 1.40868 * 119.67421 * 359.74505 * 19 18 17 29 29 C 1.36383 * 119.82702 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.47211 * 59.99704 * 1 2 3 31 31 H 1.08994 * 109.46909 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46952 * 299.99993 * 1 2 3 33 33 H 1.09001 * 109.46678 * 53.65307 * 4 2 1 34 34 H 1.08999 * 109.46837 * 293.66216 * 4 2 1 35 35 H 1.09003 * 109.48700 * 296.78189 * 6 5 4 36 36 H 1.08997 * 109.48743 * 56.84234 * 6 5 4 37 37 H 1.08999 * 109.49128 * 298.43486 * 7 6 5 38 38 H 1.09001 * 109.50652 * 178.37807 * 7 6 5 39 39 H 1.09009 * 109.46758 * 183.79827 * 9 8 7 40 40 H 1.08998 * 109.47139 * 303.79342 * 9 8 7 41 41 H 1.08994 * 109.47275 * 63.80044 * 9 8 7 42 42 H 1.08995 * 109.49355 * 299.34963 * 10 8 7 43 43 H 1.09007 * 109.50494 * 179.29829 * 10 8 7 44 44 H 1.09007 * 109.48982 * 303.15983 * 11 5 4 45 45 H 1.09001 * 109.48754 * 63.20134 * 11 5 4 46 46 H 0.97001 * 119.99916 * 265.32682 * 12 2 1 47 47 H 0.96997 * 120.00560 * 355.77903 * 15 13 12 48 48 H 1.08000 * 119.91834 * 0.02562 * 17 16 15 49 49 H 1.07998 * 120.08859 * 180.25019 * 18 17 16 50 50 H 0.97003 * 120.00147 * 180.02562 * 23 22 20 51 51 H 1.07995 * 120.08703 * 179.97438 * 28 19 18 52 52 H 1.07992 * 119.91222 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5010 -0.8551 1.1752 6 6 3.9788 -1.9166 2.0721 7 6 5.4918 -2.0779 1.9069 8 7 6.1536 -0.8007 2.2077 9 6 7.6146 -0.9347 2.1336 10 6 5.6759 0.2608 1.3107 11 6 4.1629 0.4220 1.4759 12 7 2.0183 -0.6905 -1.1962 13 6 2.1535 -0.0165 -2.3555 14 8 1.8697 1.1645 -2.4087 15 7 2.6022 -0.6520 -3.4560 16 6 2.6587 0.0206 -4.6740 17 6 2.3766 -0.6618 -5.8572 18 6 2.4251 -0.0086 -7.0534 19 6 2.7717 1.3562 -7.0928 20 6 2.8299 2.0378 -8.3276 21 1 2.7837 3.1166 -8.3516 22 6 2.9473 1.3160 -9.5202 23 7 3.6037 0.1839 -9.5379 24 14 2.1672 1.9681 -11.0872 25 1 3.1780 2.7305 -11.8632 26 1 1.6711 0.8310 -11.9034 27 1 1.0324 2.8609 -10.7408 28 6 3.0605 2.0374 -5.8941 29 6 3.0022 1.3721 -4.7049 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.5870 -1.7108 1.3078 34 1 1.7724 -0.1460 2.1355 35 1 3.7520 -1.6499 3.1044 36 1 3.4836 -2.8547 1.8214 37 1 5.7164 -2.3712 0.8815 38 1 5.8530 -2.8449 2.5920 39 1 8.0810 0.0062 2.4260 40 1 7.9414 -1.7269 2.8071 41 1 7.9054 -1.1825 1.1129 42 1 5.9027 -0.0059 0.2785 43 1 6.1711 1.1991 1.5611 44 1 3.8020 1.1890 0.7906 45 1 3.9380 0.7156 2.5013 46 1 2.2445 -1.6329 -1.1539 47 1 2.8858 -1.5779 -3.3998 48 1 2.1148 -1.7092 -5.8257 49 1 2.2024 -0.5373 -7.9684 50 1 3.6855 -0.3164 -10.3649 51 1 3.3273 3.0836 -5.9166 52 1 3.2238 1.8928 -3.7851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106583665.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:03 Heat of formation + Delta-G solvation = -13.445060 kcal Electronic energy + Delta-G solvation = -30505.102686 eV Core-core repulsion = 26503.391546 eV Total energy + Delta-G solvation = -4001.711139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.36648 -40.30348 -39.22831 -37.52583 -36.11583 -35.30955 -34.74714 -32.14288 -31.90001 -31.38449 -30.43325 -29.49850 -26.77048 -26.27027 -24.71754 -24.12956 -23.56064 -22.76655 -21.81587 -21.41890 -20.73384 -19.47244 -19.07465 -18.12730 -17.27769 -17.03851 -16.73825 -16.20739 -16.06907 -15.88981 -15.83355 -15.69649 -15.58752 -15.18473 -15.09585 -14.71018 -14.48703 -14.07413 -13.94035 -13.76737 -13.65317 -13.46637 -13.25950 -13.11328 -12.98041 -12.82849 -12.70114 -12.65657 -12.53140 -12.31826 -12.25254 -12.10956 -11.90284 -11.71996 -11.53577 -11.46397 -11.19603 -10.87344 -10.44277 -9.91991 -9.45049 -9.43755 -9.24680 -8.93452 -8.68089 -6.18845 0.90852 1.17313 1.38347 1.46291 1.57203 1.93291 2.20634 2.33034 2.70345 2.84029 2.96172 3.52910 3.75987 3.78998 3.87644 4.06972 4.17389 4.21284 4.33304 4.36162 4.41796 4.47065 4.51579 4.54928 4.59378 4.61714 4.66782 4.77137 4.81716 4.83713 4.88739 4.92843 4.97330 5.00551 5.07331 5.07456 5.13789 5.20664 5.32008 5.33218 5.51079 5.66054 5.71754 5.84387 5.93150 5.95693 6.06787 6.13749 6.16342 6.18617 6.33647 6.41819 6.66077 6.92445 7.04216 7.31941 7.83047 8.22629 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002156 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.884734 B =12982.102271 C =13878.373708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 H 0.055 0.945 4 C 0.057 3.943 5 N -0.546 5.546 6 C 0.061 3.939 7 C 0.054 3.946 8 N -0.551 5.551 9 C 0.024 3.976 10 C 0.059 3.941 11 C 0.064 3.936 12 N -0.708 5.708 13 C 0.695 3.305 14 O -0.630 6.630 15 N -0.661 5.661 16 C 0.017 3.983 17 C -0.104 4.104 18 C -0.190 4.190 19 C 0.080 3.920 20 C -0.505 4.505 21 H 0.073 0.927 22 C 0.051 3.949 23 N -0.799 5.799 24 Si 0.972 3.028 25 H -0.259 1.259 26 H -0.260 1.260 27 H -0.263 1.263 28 C -0.246 4.246 29 C -0.078 4.078 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.019 0.981 42 H 0.021 0.979 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.408 0.592 47 H 0.409 0.591 48 H 0.122 0.878 49 H 0.102 0.898 50 H 0.294 0.706 51 H 0.089 0.911 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -9.940 23.345 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.073 0.927 4 C -0.071 4.071 5 N -0.271 5.271 6 C -0.066 4.066 7 C -0.074 4.074 8 N -0.276 5.276 9 C -0.124 4.124 10 C -0.069 4.069 11 C -0.065 4.065 12 N -0.363 5.363 13 C 0.395 3.605 14 O -0.511 6.511 15 N -0.309 5.309 16 C -0.077 4.077 17 C -0.125 4.125 18 C -0.210 4.210 19 C 0.077 3.923 20 C -0.533 4.533 21 H 0.091 0.909 22 C -0.168 4.168 23 N -0.423 5.423 24 Si 0.792 3.208 25 H -0.184 1.184 26 H -0.184 1.184 27 H -0.187 1.187 28 C -0.266 4.266 29 C -0.098 4.098 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.244 0.756 47 H 0.245 0.755 48 H 0.140 0.860 49 H 0.120 0.880 50 H 0.105 0.895 51 H 0.107 0.893 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.645 -9.111 23.237 24.968 hybrid contribution 0.279 -0.103 -1.005 1.048 sum 0.924 -9.214 22.232 24.083 Atomic orbital electron populations 1.22116 0.94613 1.02936 1.01919 1.20785 0.93641 0.96077 0.83309 0.92693 1.22386 0.87155 1.02232 0.95306 1.62025 1.05414 1.06167 1.53458 1.22209 0.94434 0.95299 0.94687 1.22243 0.94219 0.91187 0.99711 1.62245 1.06507 1.06528 1.52277 1.22387 0.86788 1.03177 1.00000 1.22088 0.95236 0.95600 0.93976 1.22056 0.93333 0.91690 0.99398 1.44716 1.70672 1.13632 1.07282 1.16176 0.78158 0.84898 0.81231 1.90859 1.59105 1.16301 1.84867 1.41843 1.67413 1.15641 1.05999 1.16897 1.13950 0.92581 0.84228 1.20408 1.01467 0.99146 0.91459 1.20686 1.08405 0.95442 0.96439 1.17895 0.88838 0.92713 0.92848 1.19691 1.47186 0.94914 0.91487 0.90913 1.26734 0.91782 0.94317 1.04016 1.69946 1.26449 1.14592 1.31288 0.85364 0.79649 0.79435 0.76325 1.18389 1.18386 1.18662 1.20699 1.13525 0.99314 0.93104 1.20436 0.98674 0.94285 0.96454 0.95079 0.90703 0.89944 0.87833 0.91757 0.93809 0.88296 0.95197 0.88738 0.91008 0.89958 0.96241 0.96033 0.90107 0.91911 0.93551 0.75591 0.75483 0.86039 0.88001 0.89528 0.89297 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.49 71.98 0.68 -2.35 16 2 C 0.17 3.52 2.58 44.99 0.12 3.63 16 3 H 0.05 1.52 6.55 -2.38 -0.02 1.50 16 4 C 0.06 0.78 4.57 86.30 0.39 1.17 16 5 N -0.55 -8.82 4.33 -895.75 -3.88 -12.70 16 6 C 0.06 0.76 5.56 86.31 0.48 1.24 16 7 C 0.05 0.78 5.62 86.31 0.49 1.26 16 8 N -0.55 -9.33 4.97 -921.96 -4.58 -13.91 16 9 C 0.02 0.35 9.60 127.69 1.23 1.58 16 10 C 0.06 1.17 5.62 86.31 0.49 1.66 16 11 C 0.06 1.22 5.43 86.31 0.47 1.68 16 12 N -0.71 -17.14 4.77 -457.81 -2.18 -19.33 16 13 C 0.69 24.92 8.36 179.06 1.50 26.42 16 14 O -0.63 -28.78 13.49 -3.96 -0.05 -28.84 16 15 N -0.66 -23.78 5.31 -316.79 -1.68 -25.46 16 16 C 0.02 0.81 6.29 38.56 0.24 1.05 16 17 C -0.10 -4.88 9.90 22.13 0.22 -4.66 16 18 C -0.19 -10.16 8.74 22.48 0.20 -9.96 16 19 C 0.08 4.55 5.60 -21.27 -0.12 4.44 16 20 C -0.51 -28.38 8.95 23.39 0.21 -28.17 16 21 H 0.07 4.02 8.01 -2.91 -0.02 4.00 16 22 C 0.05 2.58 4.81 85.24 0.41 2.99 16 23 N -0.80 -41.37 11.57 21.82 0.25 -41.12 16 24 Si 0.97 38.26 29.66 68.60 2.03 40.29 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 27 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 28 C -0.25 -13.62 9.74 22.48 0.22 -13.40 16 29 C -0.08 -4.05 8.60 22.14 0.19 -3.85 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.10 0.95 7.84 -2.39 -0.02 0.93 16 34 H 0.06 0.77 7.99 -2.39 -0.02 0.75 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.10 0.87 8.00 -2.39 -0.02 0.85 16 37 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 1.03 8.13 -2.39 -0.02 1.01 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.08 0.92 8.13 -2.39 -0.02 0.90 16 41 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 1.50 8.14 -2.38 -0.02 1.49 16 44 H 0.06 1.45 6.93 -2.38 -0.02 1.44 16 45 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.41 7.52 8.62 -92.71 -0.80 6.72 16 47 H 0.41 11.38 8.83 -92.71 -0.82 10.56 16 48 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 49 H 0.10 5.52 6.33 -2.91 -0.02 5.50 16 50 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 51 H 0.09 4.78 8.06 -2.91 -0.02 4.75 16 52 H 0.10 5.23 6.30 -2.91 -0.02 5.21 16 Total: -1.00 -70.77 412.39 -3.38 -74.16 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.70 Total: 42.17 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 7.40 Total: -15.26 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -12.07 Total: -112.53 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.05 Total: -28.84 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -70.77 -3.38 -74.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106583665.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.712 kcal (2) G-P(sol) polarization free energy of solvation -70.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds