Wall clock time and date at job start Wed Apr 1 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47250 * 2 1 4 4 C 1.52999 * 109.47286 * 239.99373 * 2 1 3 5 5 N 1.46897 * 109.47351 * 185.00210 * 4 2 1 6 6 C 1.46957 * 110.99980 * 293.80410 * 5 4 2 7 7 C 1.53049 * 109.36151 * 176.81206 * 6 5 4 8 8 N 1.46954 * 109.36943 * 58.39905 * 7 6 5 9 9 C 1.46897 * 111.00299 * 176.80920 * 8 7 6 10 10 C 1.46961 * 110.87785 * 300.68108 * 8 7 6 11 11 C 1.46953 * 110.99972 * 169.99686 * 5 4 2 12 12 N 1.46507 * 109.46804 * 119.99469 * 2 1 3 13 13 C 1.34770 * 119.99902 * 274.99927 * 12 2 1 14 14 O 1.21575 * 120.00210 * 0.02562 * 13 12 2 15 15 N 1.34778 * 119.99647 * 179.72507 * 13 12 2 16 16 C 1.39245 * 119.99917 * 175.13220 * 15 13 12 17 17 C 1.39481 * 119.83248 * 325.32202 * 16 15 13 18 18 C 1.36372 * 120.16945 * 179.75897 * 17 16 15 19 19 C 1.40875 * 119.82761 * 0.51738 * 18 17 16 20 20 C 1.41154 * 120.16555 * 179.71804 * 19 18 17 21 21 H 1.07994 * 119.99998 * 205.37187 * 20 19 18 22 22 C 1.39893 * 120.00094 * 25.37244 * 20 19 18 23 23 N 1.30886 * 120.00097 * 16.81531 * 22 20 19 24 24 Si 1.86794 * 120.00294 * 196.82141 * 22 20 19 25 25 H 1.48503 * 109.47634 * 89.99456 * 24 22 20 26 26 H 1.48502 * 109.47482 * 209.99960 * 24 22 20 27 27 H 1.48507 * 109.46953 * 329.99674 * 24 22 20 28 28 C 1.40865 * 119.66911 * 359.73840 * 19 18 17 29 29 C 1.36372 * 119.83372 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.47113 * 300.00518 * 1 2 3 31 31 H 1.09005 * 109.46919 * 60.00375 * 1 2 3 32 32 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47058 * 305.00612 * 4 2 1 34 34 H 1.08995 * 109.47072 * 64.99846 * 4 2 1 35 35 H 1.09003 * 109.48253 * 296.77336 * 6 5 4 36 36 H 1.08989 * 109.49201 * 56.83885 * 6 5 4 37 37 H 1.09000 * 109.49079 * 298.42437 * 7 6 5 38 38 H 1.09003 * 109.50501 * 178.37494 * 7 6 5 39 39 H 1.08998 * 109.47078 * 183.79906 * 9 8 7 40 40 H 1.09001 * 109.47054 * 303.79754 * 9 8 7 41 41 H 1.08998 * 109.47090 * 63.80253 * 9 8 7 42 42 H 1.09006 * 109.48542 * 299.34548 * 10 8 7 43 43 H 1.09004 * 109.50521 * 179.30117 * 10 8 7 44 44 H 1.09000 * 109.49352 * 303.15960 * 11 5 4 45 45 H 1.09000 * 109.48757 * 63.20653 * 11 5 4 46 46 H 0.97002 * 119.99576 * 94.99602 * 12 2 1 47 47 H 0.96992 * 120.00114 * 355.13203 * 15 13 12 48 48 H 1.08006 * 119.91668 * 0.02820 * 17 16 15 49 49 H 1.08003 * 120.09263 * 180.26287 * 18 17 16 50 50 H 0.96992 * 120.00216 * 179.97438 * 23 22 20 51 51 H 1.08004 * 120.08664 * 179.97438 * 28 19 18 52 52 H 1.08001 * 119.91963 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5041 -0.8268 -1.1903 6 6 4.1314 0.4993 -1.2756 7 6 5.6481 0.3534 -1.1311 8 7 6.1550 -0.5347 -2.1864 9 6 7.6190 -0.6402 -2.1276 10 6 5.5276 -1.8609 -2.1011 11 6 4.0109 -1.7151 -2.2456 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8574 1.1614 2.4118 15 7 2.5909 -0.6548 3.4590 16 6 2.8205 0.0606 4.6314 17 6 3.3012 1.3682 4.5636 18 6 3.5238 2.0767 5.7073 19 6 3.2774 1.4810 6.9598 20 6 3.5110 2.2058 8.1483 21 1 3.7248 1.6810 9.0677 22 6 3.4656 3.6039 8.1353 23 7 2.8963 4.2310 7.1375 24 14 4.2177 4.5760 9.5420 25 1 5.6416 4.8670 9.2371 26 1 3.4774 5.8519 9.7135 27 1 4.1319 3.7819 10.7939 28 6 2.7971 0.1581 7.0203 29 6 2.5746 -0.5363 5.8679 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6053 -1.7199 -1.2950 34 1 1.7517 -0.1586 -2.1369 35 1 3.8998 0.9497 -2.2408 36 1 3.7494 1.1345 -0.4765 37 1 5.8811 -0.0718 -0.1548 38 1 6.1183 1.3325 -1.2228 39 1 7.9732 -1.2486 -2.9597 40 1 8.0579 0.3554 -2.1928 41 1 7.9122 -1.1057 -1.1866 42 1 5.7593 -2.3114 -1.1359 43 1 5.9096 -2.4964 -2.9000 44 1 3.5410 -2.6942 -2.1536 45 1 3.7776 -1.2899 -3.2218 46 1 2.2489 -1.6317 1.1528 47 1 2.7505 -1.6112 3.4353 48 1 3.4935 1.8222 3.6026 49 1 3.8920 3.0906 5.6532 50 1 2.8645 5.2003 7.1286 51 1 2.6062 -0.3054 7.9770 52 1 2.2067 -1.5507 5.9127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106583667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:10 Heat of formation + Delta-G solvation = 9.291287 kcal Electronic energy + Delta-G solvation = -30726.046345 eV Core-core repulsion = 26725.321128 eV Total energy + Delta-G solvation = -4000.725217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.05805 -39.35971 -37.56064 -36.44758 -34.55507 -34.07917 -32.88380 -31.20377 -30.85472 -29.38597 -28.85784 -28.52847 -25.62017 -24.82746 -23.99181 -23.32282 -21.86607 -21.14752 -20.51180 -20.00140 -19.78988 -17.86419 -17.22580 -16.71287 -16.40818 -15.73533 -15.32813 -15.21045 -15.07738 -14.83817 -14.77298 -14.67684 -14.16751 -13.88287 -13.76495 -13.22237 -12.97848 -12.78351 -12.69189 -12.59739 -12.42158 -12.21610 -12.03813 -11.90081 -11.74043 -11.73349 -11.49034 -11.42234 -11.35378 -11.08386 -11.00278 -10.85921 -10.60702 -10.44139 -9.86934 -9.78075 -9.42291 -9.16986 -8.72844 -8.67900 -8.59964 -8.51656 -7.42928 -6.88232 -6.64214 -4.20320 2.76742 3.11514 3.13180 3.15686 3.17734 3.27506 3.58339 3.66581 3.89305 3.99850 4.53836 4.60007 4.73943 4.76426 4.77708 4.92543 5.02050 5.08927 5.13981 5.20871 5.26588 5.29519 5.32274 5.36710 5.50013 5.52166 5.58627 5.63273 5.67418 5.78850 5.79815 5.81910 6.01112 6.21534 6.23564 6.46637 6.62054 6.66940 6.79660 6.86452 6.90275 6.93964 6.98719 7.14114 7.20938 7.39543 7.49237 7.70722 7.98470 8.11599 8.14536 8.35957 8.66559 8.72190 8.97483 9.03428 9.29626 10.28398 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.002396 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.571151 B =11685.535429 C =12663.888946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.167 3.833 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.534 5.534 6 C 0.057 3.943 7 C 0.057 3.943 8 N -0.546 5.546 9 C 0.025 3.975 10 C 0.057 3.943 11 C 0.058 3.942 12 N -0.733 5.733 13 C 0.696 3.304 14 O -0.580 6.580 15 N -0.670 5.670 16 C 0.021 3.979 17 C -0.086 4.086 18 C -0.153 4.153 19 C 0.103 3.897 20 C -0.462 4.462 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.792 5.792 24 Si 0.907 3.093 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.263 1.263 28 C -0.214 4.214 29 C -0.110 4.110 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.040 0.960 46 H 0.393 0.607 47 H 0.389 0.611 48 H 0.101 0.899 49 H 0.119 0.881 50 H 0.280 0.720 51 H 0.094 0.906 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 -11.324 -19.853 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.061 3.939 3 H 0.104 0.896 4 C -0.081 4.081 5 N -0.258 5.258 6 C -0.071 4.071 7 C -0.071 4.071 8 N -0.271 5.271 9 C -0.123 4.123 10 C -0.071 4.071 11 C -0.070 4.070 12 N -0.389 5.389 13 C 0.396 3.604 14 O -0.457 6.457 15 N -0.316 5.316 16 C -0.072 4.072 17 C -0.106 4.106 18 C -0.173 4.173 19 C 0.100 3.900 20 C -0.492 4.492 21 H 0.095 0.905 22 C -0.144 4.144 23 N -0.417 5.417 24 Si 0.732 3.268 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.235 4.235 29 C -0.130 4.130 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.226 0.774 47 H 0.221 0.779 48 H 0.119 0.881 49 H 0.137 0.863 50 H 0.091 0.909 51 H 0.112 0.888 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.480 -9.972 -19.914 22.409 hybrid contribution 0.393 -0.435 0.548 0.802 sum 2.873 -10.407 -19.366 22.172 Atomic orbital electron populations 1.22190 0.95447 1.01913 1.02736 1.20672 0.93182 0.97202 0.82871 0.89634 1.22446 0.87638 1.01158 0.96824 1.62095 1.05054 1.11917 1.46779 1.22201 0.93665 0.90280 1.01004 1.22163 0.94737 0.97193 0.93039 1.62187 1.05879 1.11560 1.47506 1.22339 0.87417 1.02189 1.00385 1.22151 0.93899 0.90307 1.00789 1.22144 0.94606 0.97213 0.93086 1.44907 1.72317 1.13392 1.08284 1.16005 0.78546 0.85413 0.80394 1.90931 1.56202 1.14368 1.84197 1.42106 1.69108 1.10429 1.09920 1.16970 1.12818 0.94285 0.83124 1.20424 0.99018 0.93141 0.98045 1.20981 1.04761 1.00312 0.91240 1.17645 0.88170 0.90879 0.93271 1.19511 1.42708 0.90882 0.96075 0.90525 1.25913 0.92974 0.98520 0.96958 1.69868 1.31139 1.10320 1.30372 0.86331 0.79867 0.78932 0.81652 1.19362 1.20397 1.18710 1.20530 1.10121 0.97187 0.95616 1.20021 1.02941 0.98252 0.91834 0.91347 0.92090 0.92682 0.90245 0.93340 0.94113 0.89543 0.93651 0.90263 0.91475 0.91317 0.95444 0.93880 0.90511 0.90342 0.94126 0.77405 0.77868 0.88131 0.86335 0.90924 0.88769 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.17 1.91 2.36 -67.93 -0.16 1.75 16 3 H 0.09 1.20 6.17 -51.93 -0.32 0.88 16 4 C 0.05 0.41 4.51 -3.83 -0.02 0.39 16 5 N -0.53 -5.04 4.43 -234.48 -1.04 -6.08 16 6 C 0.06 0.60 5.41 -3.77 -0.02 0.58 16 7 C 0.06 0.60 5.62 -3.77 -0.02 0.58 16 8 N -0.55 -5.20 4.97 -242.75 -1.21 -6.40 16 9 C 0.02 0.20 9.60 60.06 0.58 0.78 16 10 C 0.06 0.48 5.62 -3.77 -0.02 0.45 16 11 C 0.06 0.46 5.61 -3.77 -0.02 0.44 16 12 N -0.73 -9.49 4.81 -58.68 -0.28 -9.78 16 13 C 0.70 12.72 8.25 -86.92 -0.72 12.00 16 14 O -0.58 -13.34 13.74 5.30 0.07 -13.27 16 15 N -0.67 -12.23 5.31 -14.10 -0.07 -12.31 16 16 C 0.02 0.48 6.27 -83.57 -0.52 -0.05 16 17 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 18 C -0.15 -4.19 8.63 -39.26 -0.34 -4.53 16 19 C 0.10 2.82 5.57 -106.80 -0.59 2.23 16 20 C -0.46 -12.53 9.04 -37.86 -0.34 -12.87 16 21 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 22 C 0.07 1.91 5.15 -17.34 -0.09 1.82 16 23 N -0.79 -21.39 10.94 55.55 0.61 -20.78 16 24 Si 0.91 19.15 29.59 -169.99 -5.03 14.12 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 28 C -0.21 -5.33 9.74 -39.26 -0.38 -5.72 16 29 C -0.11 -2.48 9.90 -39.79 -0.39 -2.88 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 34 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 1.08 6.45 -51.94 -0.33 0.75 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 45 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.39 4.16 8.62 -40.82 -0.35 3.81 16 47 H 0.39 5.62 8.83 -40.82 -0.36 5.26 16 48 H 0.10 2.60 6.48 -52.48 -0.34 2.26 16 49 H 0.12 3.37 6.18 -52.48 -0.32 3.05 16 50 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 51 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 52 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 411.38 15.07 6.20 6.20 Total: -1.00 -31.71 411.38 -12.56 -44.27 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -8.76 Total: 12.98 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.05 Total: -8.96 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -1.99 Total: -55.34 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.71 -12.56 -44.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106583667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.563 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds