Wall clock time and date at job start Wed Apr 1 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47250 * 2 1 4 4 C 1.52999 * 109.47286 * 239.99373 * 2 1 3 5 5 N 1.46897 * 109.47351 * 185.00210 * 4 2 1 6 6 C 1.46957 * 110.99980 * 293.80410 * 5 4 2 7 7 C 1.53049 * 109.36151 * 176.81206 * 6 5 4 8 8 N 1.46954 * 109.36943 * 58.39905 * 7 6 5 9 9 C 1.46897 * 111.00299 * 176.80920 * 8 7 6 10 10 C 1.46961 * 110.87785 * 300.68108 * 8 7 6 11 11 C 1.46953 * 110.99972 * 169.99686 * 5 4 2 12 12 N 1.46507 * 109.46804 * 119.99469 * 2 1 3 13 13 C 1.34770 * 119.99902 * 274.99927 * 12 2 1 14 14 O 1.21575 * 120.00210 * 0.02562 * 13 12 2 15 15 N 1.34778 * 119.99647 * 179.72507 * 13 12 2 16 16 C 1.39245 * 119.99917 * 175.13220 * 15 13 12 17 17 C 1.39481 * 119.83248 * 325.32202 * 16 15 13 18 18 C 1.36372 * 120.16945 * 179.75897 * 17 16 15 19 19 C 1.40875 * 119.82761 * 0.51738 * 18 17 16 20 20 C 1.41154 * 120.16555 * 179.71804 * 19 18 17 21 21 H 1.07994 * 119.99998 * 205.37187 * 20 19 18 22 22 C 1.39893 * 120.00094 * 25.37244 * 20 19 18 23 23 N 1.30886 * 120.00097 * 16.81531 * 22 20 19 24 24 Si 1.86794 * 120.00294 * 196.82141 * 22 20 19 25 25 H 1.48503 * 109.47634 * 89.99456 * 24 22 20 26 26 H 1.48502 * 109.47482 * 209.99960 * 24 22 20 27 27 H 1.48507 * 109.46953 * 329.99674 * 24 22 20 28 28 C 1.40865 * 119.66911 * 359.73840 * 19 18 17 29 29 C 1.36372 * 119.83372 * 0.02562 * 28 19 18 30 30 H 1.09003 * 109.47113 * 300.00518 * 1 2 3 31 31 H 1.09005 * 109.46919 * 60.00375 * 1 2 3 32 32 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47058 * 305.00612 * 4 2 1 34 34 H 1.08995 * 109.47072 * 64.99846 * 4 2 1 35 35 H 1.09003 * 109.48253 * 296.77336 * 6 5 4 36 36 H 1.08989 * 109.49201 * 56.83885 * 6 5 4 37 37 H 1.09000 * 109.49079 * 298.42437 * 7 6 5 38 38 H 1.09003 * 109.50501 * 178.37494 * 7 6 5 39 39 H 1.08998 * 109.47078 * 183.79906 * 9 8 7 40 40 H 1.09001 * 109.47054 * 303.79754 * 9 8 7 41 41 H 1.08998 * 109.47090 * 63.80253 * 9 8 7 42 42 H 1.09006 * 109.48542 * 299.34548 * 10 8 7 43 43 H 1.09004 * 109.50521 * 179.30117 * 10 8 7 44 44 H 1.09000 * 109.49352 * 303.15960 * 11 5 4 45 45 H 1.09000 * 109.48757 * 63.20653 * 11 5 4 46 46 H 0.97002 * 119.99576 * 94.99602 * 12 2 1 47 47 H 0.96992 * 120.00114 * 355.13203 * 15 13 12 48 48 H 1.08006 * 119.91668 * 0.02820 * 17 16 15 49 49 H 1.08003 * 120.09263 * 180.26287 * 18 17 16 50 50 H 0.96992 * 120.00216 * 179.97438 * 23 22 20 51 51 H 1.08004 * 120.08664 * 179.97438 * 28 19 18 52 52 H 1.08001 * 119.91963 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5041 -0.8268 -1.1903 6 6 4.1314 0.4993 -1.2756 7 6 5.6481 0.3534 -1.1311 8 7 6.1550 -0.5347 -2.1864 9 6 7.6190 -0.6402 -2.1276 10 6 5.5276 -1.8609 -2.1011 11 6 4.0109 -1.7151 -2.2456 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8574 1.1614 2.4118 15 7 2.5909 -0.6548 3.4590 16 6 2.8205 0.0606 4.6314 17 6 3.3012 1.3682 4.5636 18 6 3.5238 2.0767 5.7073 19 6 3.2774 1.4810 6.9598 20 6 3.5110 2.2058 8.1483 21 1 3.7248 1.6810 9.0677 22 6 3.4656 3.6039 8.1353 23 7 2.8963 4.2310 7.1375 24 14 4.2177 4.5760 9.5420 25 1 5.6416 4.8670 9.2371 26 1 3.4774 5.8519 9.7135 27 1 4.1319 3.7819 10.7939 28 6 2.7971 0.1581 7.0203 29 6 2.5746 -0.5363 5.8679 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6053 -1.7199 -1.2950 34 1 1.7517 -0.1586 -2.1369 35 1 3.8998 0.9497 -2.2408 36 1 3.7494 1.1345 -0.4765 37 1 5.8811 -0.0718 -0.1548 38 1 6.1183 1.3325 -1.2228 39 1 7.9732 -1.2486 -2.9597 40 1 8.0579 0.3554 -2.1928 41 1 7.9122 -1.1057 -1.1866 42 1 5.7593 -2.3114 -1.1359 43 1 5.9096 -2.4964 -2.9000 44 1 3.5410 -2.6942 -2.1536 45 1 3.7776 -1.2899 -3.2218 46 1 2.2489 -1.6317 1.1528 47 1 2.7505 -1.6112 3.4353 48 1 3.4935 1.8222 3.6026 49 1 3.8920 3.0906 5.6532 50 1 2.8645 5.2003 7.1286 51 1 2.6062 -0.3054 7.9770 52 1 2.2067 -1.5507 5.9127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106583667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:08 Heat of formation + Delta-G solvation = -13.494717 kcal Electronic energy + Delta-G solvation = -30727.034421 eV Core-core repulsion = 26725.321128 eV Total energy + Delta-G solvation = -4001.713293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.40979 -40.33020 -39.24349 -37.55367 -36.11657 -35.31859 -34.68261 -32.15179 -31.90851 -31.35099 -30.42717 -29.51168 -26.79014 -26.27997 -24.78576 -24.12300 -23.41680 -23.00813 -21.73514 -21.41595 -20.72162 -19.38768 -19.16283 -18.12784 -17.29644 -17.16756 -16.70439 -16.17069 -16.04411 -15.89372 -15.81745 -15.72185 -15.57417 -15.18017 -15.12197 -14.69712 -14.49463 -14.10187 -13.90987 -13.75885 -13.54077 -13.45254 -13.30768 -13.18149 -12.97312 -12.80039 -12.72125 -12.64209 -12.56501 -12.29900 -12.25995 -12.16024 -11.74289 -11.69952 -11.66857 -11.44469 -11.22477 -10.99117 -10.47356 -9.94128 -9.45943 -9.41869 -9.26543 -8.78357 -8.56572 -6.23127 0.90525 1.17025 1.38332 1.49671 1.52815 1.89758 2.22174 2.32979 2.80218 2.84621 2.94995 3.51190 3.73825 3.77842 3.86416 4.05614 4.17110 4.18951 4.30964 4.33761 4.45403 4.46411 4.49479 4.50443 4.57791 4.62434 4.65073 4.76486 4.79482 4.83038 4.87387 4.96675 4.98795 5.00202 5.05455 5.06291 5.13540 5.22721 5.30109 5.33741 5.49168 5.67283 5.70742 5.84298 5.91743 5.93728 6.11856 6.12394 6.15518 6.17779 6.30988 6.41087 6.71998 6.96195 7.05694 7.30545 7.81497 8.37534 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.002396 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.571151 B =11685.535429 C =12663.888946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.053 0.947 4 C 0.058 3.942 5 N -0.543 5.543 6 C 0.063 3.937 7 C 0.060 3.940 8 N -0.552 5.552 9 C 0.025 3.975 10 C 0.055 3.945 11 C 0.061 3.939 12 N -0.707 5.707 13 C 0.693 3.307 14 O -0.631 6.631 15 N -0.661 5.661 16 C 0.036 3.964 17 C -0.099 4.099 18 C -0.177 4.177 19 C 0.070 3.930 20 C -0.496 4.496 21 H 0.081 0.919 22 C 0.028 3.972 23 N -0.832 5.832 24 Si 0.985 3.015 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.221 4.221 29 C -0.104 4.104 30 H 0.029 0.971 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.021 0.979 42 H 0.032 0.968 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.042 0.958 46 H 0.410 0.590 47 H 0.412 0.588 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.285 0.715 51 H 0.110 0.890 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -14.185 -21.145 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.072 0.928 4 C -0.070 4.070 5 N -0.268 5.268 6 C -0.065 4.065 7 C -0.068 4.068 8 N -0.277 5.277 9 C -0.123 4.123 10 C -0.073 4.073 11 C -0.067 4.067 12 N -0.363 5.363 13 C 0.394 3.606 14 O -0.511 6.511 15 N -0.309 5.309 16 C -0.059 4.059 17 C -0.120 4.120 18 C -0.197 4.197 19 C 0.068 3.932 20 C -0.526 4.526 21 H 0.099 0.901 22 C -0.185 4.185 23 N -0.459 5.459 24 Si 0.806 3.194 25 H -0.188 1.188 26 H -0.196 1.196 27 H -0.177 1.177 28 C -0.241 4.241 29 C -0.125 4.125 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.061 0.939 46 H 0.246 0.754 47 H 0.249 0.751 48 H 0.105 0.895 49 H 0.113 0.887 50 H 0.096 0.904 51 H 0.128 0.872 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.185 -12.925 -21.263 24.979 hybrid contribution 0.452 0.340 0.765 0.951 sum 2.638 -12.585 -20.498 24.198 Atomic orbital electron populations 1.22113 0.94493 1.03077 1.01883 1.20816 0.93872 0.96047 0.83392 0.92837 1.22389 0.87083 1.02361 0.95156 1.62081 1.05574 1.11225 1.47904 1.22025 0.93640 0.90884 0.99988 1.22066 0.94939 0.97382 0.92420 1.62235 1.06728 1.12165 1.46526 1.22386 0.86641 1.02562 1.00746 1.22245 0.94380 0.89747 1.00914 1.22207 0.94292 0.97760 0.92443 1.44715 1.70716 1.13945 1.06947 1.16207 0.78142 0.84859 0.81402 1.90912 1.58262 1.16900 1.85068 1.41879 1.69036 1.11327 1.08685 1.17012 1.10359 0.93383 0.85120 1.20424 1.00013 0.94725 0.96837 1.20862 1.06645 0.99814 0.92374 1.17986 0.89452 0.92468 0.93341 1.19795 1.44455 0.92049 0.96254 0.90078 1.26857 0.92677 0.99214 0.99785 1.69958 1.32410 1.10871 1.32638 0.85160 0.78826 0.77325 0.78096 1.18799 1.19579 1.17678 1.20819 1.09515 0.96449 0.97341 1.20372 1.01532 0.99958 0.90591 0.95160 0.90026 0.90393 0.87435 0.92045 0.93852 0.92269 0.95864 0.90503 0.89804 0.91279 0.96037 0.94976 0.88609 0.88033 0.93942 0.75383 0.75138 0.89455 0.88736 0.90433 0.87172 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.48 71.98 0.68 -2.46 16 2 C 0.16 3.59 2.36 44.99 0.11 3.70 16 3 H 0.05 1.56 6.17 -2.39 -0.01 1.54 16 4 C 0.06 0.83 4.51 86.30 0.39 1.22 16 5 N -0.54 -9.19 4.43 -895.76 -3.97 -13.16 16 6 C 0.06 1.34 5.41 86.31 0.47 1.81 16 7 C 0.06 1.30 5.62 86.31 0.49 1.78 16 8 N -0.55 -9.88 4.97 -921.94 -4.58 -14.46 16 9 C 0.02 0.37 9.60 127.69 1.23 1.60 16 10 C 0.06 0.80 5.62 86.31 0.49 1.29 16 11 C 0.06 0.78 5.61 86.31 0.48 1.26 16 12 N -0.71 -17.38 4.81 -457.82 -2.20 -19.58 16 13 C 0.69 25.31 8.25 179.06 1.48 26.78 16 14 O -0.63 -30.18 13.74 -3.95 -0.05 -30.24 16 15 N -0.66 -23.37 5.31 -316.79 -1.68 -25.05 16 16 C 0.04 1.62 6.27 38.56 0.24 1.86 16 17 C -0.10 -5.32 8.57 22.13 0.19 -5.13 16 18 C -0.18 -10.26 8.63 22.48 0.19 -10.06 16 19 C 0.07 3.97 5.57 -21.27 -0.12 3.86 16 20 C -0.50 -27.75 9.04 23.39 0.21 -27.53 16 21 H 0.08 4.29 7.90 -2.91 -0.02 4.26 16 22 C 0.03 1.52 5.15 85.23 0.44 1.95 16 23 N -0.83 -47.12 10.94 21.82 0.24 -46.89 16 24 Si 0.99 40.08 29.59 68.60 2.03 42.11 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 27 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 28 C -0.22 -10.97 9.74 22.48 0.22 -10.75 16 29 C -0.10 -4.54 9.90 22.13 0.22 -4.32 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.01 8.03 -2.39 -0.02 0.99 16 34 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.58 6.45 -2.39 -0.02 1.56 16 37 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 41 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 45 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.41 7.47 8.62 -92.71 -0.80 6.67 16 47 H 0.41 10.73 8.83 -92.71 -0.82 9.92 16 48 H 0.09 4.82 6.48 -2.91 -0.02 4.80 16 49 H 0.09 5.81 6.18 -2.91 -0.02 5.80 16 50 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 51 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 52 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -74.19 411.38 -3.52 -77.71 By element: Atomic # 1 Polarization: 43.40 SS G_CDS: -0.69 Total: 42.70 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 7.40 Total: -13.15 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -12.19 Total: -119.13 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -74.19 -3.52 -77.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106583667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.211 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds