Wall clock time and date at job start Wed Apr 1 2020 05:44:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.47496 * 2 1
4 4 C 1.50699 * 109.47274 * 120.00337 * 2 1 3
5 5 H 1.07997 * 119.99799 * 92.57199 * 4 2 1
6 6 C 1.37869 * 120.00103 * 272.57392 * 4 2 1
7 7 N 1.31513 * 120.00359 * 174.17613 * 6 4 2
8 8 Si 1.86806 * 119.99891 * 354.17648 * 6 4 2
9 9 H 1.48496 * 109.47012 * 274.23172 * 8 6 4
10 10 H 1.48499 * 109.47046 * 34.23250 * 8 6 4
11 11 H 1.48500 * 109.47170 * 154.23311 * 8 6 4
12 12 N 1.46899 * 109.46919 * 240.00258 * 2 1 3
13 13 C 1.46898 * 111.00091 * 183.95517 * 12 2 1
14 14 C 1.46907 * 111.00061 * 59.99802 * 12 2 1
15 15 C 1.52999 * 109.47335 * 189.99779 * 14 12 2
16 16 C 1.50694 * 109.47066 * 180.02562 * 15 14 12
17 17 O 1.21283 * 120.00353 * 0.02562 * 16 15 14
18 18 N 1.34783 * 119.99743 * 180.02562 * 16 15 14
19 19 C 1.47074 * 120.88284 * 359.72227 * 18 16 15
20 20 C 1.53699 * 108.27935 * 128.75381 * 19 18 16
21 21 N 1.46900 * 109.25410 * 54.07859 * 20 19 18
22 22 C 1.39005 * 110.99710 * 172.61037 * 21 20 19
23 23 C 1.39133 * 119.70398 * 304.30160 * 22 21 20
24 24 C 1.38311 * 119.09528 * 180.02562 * 23 22 21
25 25 C 1.38877 * 118.50225 * 0.02562 * 24 23 22
26 26 C 1.38021 * 119.33442 * 0.02562 * 25 24 23
27 27 N 1.31974 * 120.85398 * 359.71987 * 26 25 24
28 28 C 1.46892 * 111.27500 * 296.76104 * 21 20 19
29 29 C 1.47076 * 120.87965 * 179.97438 * 18 16 15
30 30 H 1.08992 * 109.47477 * 172.85087 * 1 2 3
31 31 H 1.09005 * 109.46890 * 292.84961 * 1 2 3
32 32 H 1.09004 * 109.47033 * 52.84792 * 1 2 3
33 33 H 0.96998 * 120.00218 * 179.97438 * 7 6 4
34 34 H 1.09000 * 109.47033 * 60.00191 * 13 12 2
35 35 H 1.09004 * 109.47002 * 180.02562 * 13 12 2
36 36 H 1.09003 * 109.47396 * 299.99552 * 13 12 2
37 37 H 1.08992 * 109.47095 * 310.00324 * 14 12 2
38 38 H 1.09006 * 109.46864 * 70.00127 * 14 12 2
39 39 H 1.08998 * 109.47530 * 300.00769 * 15 14 12
40 40 H 1.09006 * 109.46861 * 60.00345 * 15 14 12
41 41 H 1.09000 * 109.63242 * 248.52304 * 19 18 16
42 42 H 1.09006 * 109.62774 * 9.10438 * 19 18 16
43 43 H 1.09009 * 109.64648 * 294.08479 * 20 19 18
44 44 H 1.08995 * 109.42464 * 173.94851 * 20 19 18
45 45 H 1.08001 * 120.45944 * 359.97438 * 23 22 21
46 46 H 1.07995 * 120.74751 * 180.02562 * 24 23 22
47 47 H 1.07998 * 120.33139 * 180.02562 * 25 24 23
48 48 H 1.08001 * 119.57418 * 179.97438 * 26 25 24
49 49 H 1.09003 * 109.49503 * 303.14736 * 28 21 20
50 50 H 1.08997 * 109.49779 * 183.06242 * 28 21 20
51 51 H 1.09005 * 109.63011 * 350.90056 * 29 18 16
52 52 H 1.08994 * 109.63121 * 111.47723 * 29 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.2519 -1.7672 1.1919
6 6 2.2116 -0.0115 2.4052
7 7 2.5394 -0.6503 3.5070
8 14 1.9889 1.8431 2.4318
9 1 3.2595 2.4999 2.0325
10 1 0.9138 2.2262 1.4819
11 1 1.6166 2.2773 3.8022
12 7 2.0196 -0.6924 -1.1995
13 6 3.4850 -0.7945 -1.1871
14 6 1.5485 -0.0263 -2.4211
15 6 1.8625 -0.9041 -3.6343
16 6 1.3798 -0.2204 -4.8874
17 8 0.8384 0.8626 -4.8173
18 7 1.5498 -0.8125 -6.0862
19 6 2.2091 -2.1227 -6.1944
20 6 1.3066 -3.0496 -7.0243
21 7 0.9967 -2.4031 -8.3064
22 6 0.3210 -3.2742 -9.1530
23 6 0.8843 -4.5074 -9.4656
24 6 0.2013 -5.3642 -10.3097
25 6 -1.0265 -4.9573 -10.8152
26 6 -1.5256 -3.7194 -10.4641
27 7 -0.8542 -2.9243 -9.6525
28 6 0.2331 -1.1640 -8.1077
29 6 1.0857 -0.1630 -7.3215
30 1 -0.3634 -1.0196 -0.1279
31 1 -0.3633 0.3991 0.9471
32 1 -0.3633 0.6207 -0.8191
33 1 2.6658 -0.1584 4.3334
34 1 3.8029 -1.3533 -0.3068
35 1 3.8208 -1.3109 -2.0865
36 1 3.9187 0.2051 -1.1593
37 1 0.4722 0.1325 -2.3564
38 1 2.0518 0.9347 -2.5281
39 1 2.9389 -1.0630 -3.6990
40 1 1.3592 -1.8651 -3.5273
41 1 3.1739 -2.0075 -6.6885
42 1 2.3523 -2.5439 -5.1992
43 1 0.3813 -3.2425 -6.4812
44 1 1.8245 -3.9910 -7.2074
45 1 1.8421 -4.7916 -9.0554
46 1 0.6136 -6.3279 -10.5697
47 1 -1.5851 -5.6031 -11.4765
48 1 -2.4798 -3.3988 -10.8554
49 1 -0.6772 -1.3832 -7.5496
50 1 -0.0275 -0.7380 -9.0765
51 1 0.4858 0.7122 -7.0719
52 1 1.9442 0.1373 -7.9221
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000161813340.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:44:07
Heat of formation + Delta-G solvation = 11.746341 kcal
Electronic energy + Delta-G solvation = -30379.625093 eV
Core-core repulsion = 26379.006335 eV
Total energy + Delta-G solvation = -4000.618758 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-41.85188 -40.94255 -39.14071 -38.54186 -35.81583 -34.92709 -33.53528 -33.13210
-32.16024 -31.33270 -30.83997 -28.33602 -27.46965 -26.19368 -25.48925 -24.16865
-23.75760 -23.23848 -21.98532 -20.95694 -20.00174 -19.03998 -18.84416 -17.80092
-17.52940 -17.12585 -16.93332 -16.70552 -16.45659 -16.18577 -16.01716 -15.58124
-15.44524 -15.30049 -14.89861 -14.81556 -14.56076 -14.45179 -14.26457 -14.09828
-13.90347 -13.58194 -13.33134 -13.09645 -12.91601 -12.84565 -12.76052 -12.57080
-12.45706 -12.38728 -12.29800 -12.22616 -12.07755 -11.77363 -11.61554 -11.07768
-11.05426 -10.85785 -10.75607 -10.73802 -10.41449 -9.77052 -9.10849 -9.02147
-8.28295 -6.29292 0.20613 0.39923 1.29450 1.33444 1.42957 1.56078
1.84031 2.32425 2.44354 2.91335 3.03009 3.21203 3.45762 3.64418
3.78503 3.86420 4.01138 4.03560 4.13510 4.16950 4.21925 4.23931
4.28479 4.29315 4.37336 4.44915 4.48906 4.56529 4.62140 4.70572
4.77216 4.78823 4.80792 4.81838 4.84943 4.89863 4.96219 4.97088
5.02609 5.08837 5.19262 5.32204 5.33685 5.40109 5.47416 5.56498
5.64467 5.68046 6.06140 6.11544 6.30297 6.39439 6.66879 6.78575
7.05738 7.10341 7.36163 8.87856
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.023780 B = 0.001911 C = 0.001868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1177.195401 B =14651.822638 C =14986.460399
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.181 3.819
3 H -0.011 1.011
4 C -0.494 4.494
5 H 0.045 0.955
6 C 0.019 3.981
7 N -0.942 5.942
8 Si 0.926 3.074
9 H -0.273 1.273
10 H -0.252 1.252
11 H -0.284 1.284
12 N -0.536 5.536
13 C 0.038 3.962
14 C 0.067 3.933
15 C -0.122 4.122
16 C 0.518 3.482
17 O -0.584 6.584
18 N -0.616 5.616
19 C 0.108 3.892
20 C 0.045 3.955
21 N -0.477 5.477
22 C 0.287 3.713
23 C -0.189 4.189
24 C -0.055 4.055
25 C -0.199 4.199
26 C 0.106 3.894
27 N -0.553 5.553
28 C 0.069 3.931
29 C 0.116 3.884
30 H 0.055 0.945
31 H 0.039 0.961
32 H 0.043 0.957
33 H 0.265 0.735
34 H 0.055 0.945
35 H 0.090 0.910
36 H 0.005 0.995
37 H 0.066 0.934
38 H 0.015 0.985
39 H 0.118 0.882
40 H 0.118 0.882
41 H 0.100 0.900
42 H 0.118 0.882
43 H 0.039 0.961
44 H 0.124 0.876
45 H 0.156 0.844
46 H 0.165 0.835
47 H 0.159 0.841
48 H 0.170 0.830
49 H 0.033 0.967
50 H 0.093 0.907
51 H 0.081 0.919
52 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.102 -10.354 -33.215 34.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.073 3.927
3 H 0.006 0.994
4 C -0.533 4.533
5 H 0.064 0.936
6 C -0.179 4.179
7 N -0.582 5.582
8 Si 0.751 3.249
9 H -0.199 1.199
10 H -0.176 1.176
11 H -0.210 1.210
12 N -0.260 5.260
13 C -0.110 4.110
14 C -0.061 4.061
15 C -0.162 4.162
16 C 0.308 3.692
17 O -0.464 6.464
18 N -0.349 5.349
19 C -0.014 4.014
20 C -0.081 4.081
21 N -0.195 5.195
22 C 0.056 3.944
23 C -0.212 4.212
24 C -0.081 4.081
25 C -0.220 4.220
26 C -0.051 4.051
27 N -0.268 5.268
28 C -0.059 4.059
29 C -0.007 4.007
30 H 0.074 0.926
31 H 0.058 0.942
32 H 0.062 0.938
33 H 0.074 0.926
34 H 0.074 0.926
35 H 0.108 0.892
36 H 0.023 0.977
37 H 0.085 0.915
38 H 0.033 0.967
39 H 0.136 0.864
40 H 0.136 0.864
41 H 0.118 0.882
42 H 0.136 0.864
43 H 0.058 0.942
44 H 0.142 0.858
45 H 0.173 0.827
46 H 0.183 0.817
47 H 0.177 0.823
48 H 0.187 0.813
49 H 0.051 0.949
50 H 0.112 0.888
51 H 0.100 0.900
52 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -2.413 -9.264 -32.917 34.281
hybrid contribution -0.196 0.962 0.675 1.191
sum -2.610 -8.302 -32.242 33.396
Atomic orbital electron populations
1.21923 0.96703 1.00903 0.99266 1.19584 0.93138 0.91283 0.88693
0.99369 1.21005 1.42655 0.96162 0.93455 0.93635 1.25665 0.94839
1.02174 0.95194 1.70016 1.50166 1.37521 1.00507 0.86072 0.79546
0.81674 0.77615 1.19904 1.17608 1.20981 1.62017 1.10842 1.51888
1.01249 1.22249 0.87195 0.99064 1.02463 1.21808 1.00548 0.94388
0.89400 1.21602 1.04507 1.00597 0.89506 1.21036 0.77692 0.84979
0.85500 1.90681 1.45214 1.23405 1.87138 1.48294 1.59330 1.21586
1.05722 1.22268 0.96041 0.80630 1.02470 1.22861 0.99825 0.98725
0.86669 1.59186 1.41826 1.04881 1.13583 1.20103 0.88556 0.90894
0.94852 1.21833 1.02923 0.93654 1.02756 1.21891 0.93631 0.99950
0.92666 1.22355 0.98082 0.98125 1.03413 1.22938 0.99118 0.90810
0.92215 1.67570 1.07403 1.37648 1.14186 1.22132 0.93781 0.89221
1.00725 1.21716 0.99153 0.95519 0.84335 0.92553 0.94212 0.93842
0.92557 0.92616 0.89161 0.97676 0.91517 0.96656 0.86449 0.86413
0.88189 0.86447 0.94245 0.85807 0.82679 0.81741 0.82293 0.81328
0.94907 0.88829 0.90045 0.89566
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.71 8.43 71.98 0.61 -5.11 16
2 C 0.18 8.63 1.61 44.17 0.07 8.70 16
3 H -0.01 -0.56 5.71 -2.39 -0.01 -0.57 16
4 C -0.49 -27.76 7.57 25.60 0.19 -27.57 16
5 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16
6 C 0.02 1.11 5.47 84.65 0.46 1.57 16
7 N -0.94 -58.11 13.96 21.44 0.30 -57.81 16
8 Si 0.93 45.02 26.37 68.60 1.81 46.82 16
9 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16
10 H -0.25 -11.70 6.39 99.48 0.64 -11.07 16
11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16
12 N -0.54 -21.50 4.62 -901.45 -4.17 -25.66 16
13 C 0.04 1.41 9.06 127.69 1.16 2.57 16
14 C 0.07 2.33 4.06 86.30 0.35 2.68 16
15 C -0.12 -3.00 4.00 29.85 0.12 -2.88 16
16 C 0.52 13.84 7.71 87.65 0.68 14.51 16
17 O -0.58 -20.91 15.43 -3.04 -0.05 -20.96 16
18 N -0.62 -12.24 3.00 -817.13 -2.45 -14.69 16
19 C 0.11 1.29 6.53 86.51 0.57 1.86 16
20 C 0.05 0.56 5.43 86.54 0.47 1.03 16
21 N -0.48 -7.66 4.65 -700.13 -3.26 -10.91 16
22 C 0.29 4.84 6.41 133.06 0.85 5.69 16
23 C -0.19 -2.18 9.17 22.50 0.21 -1.97 16
24 C -0.06 -0.47 10.17 22.44 0.23 -0.24 16
25 C -0.20 -1.84 10.10 22.37 0.23 -1.61 16
26 C 0.11 1.44 11.17 84.62 0.95 2.39 16
27 N -0.55 -10.53 8.67 -193.27 -1.68 -12.20 16
28 C 0.07 1.32 4.82 86.37 0.42 1.74 16
29 C 0.12 2.27 6.59 86.34 0.57 2.84 16
30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16
31 H 0.04 1.79 7.24 -2.38 -0.02 1.77 16
32 H 0.04 1.72 6.59 -2.39 -0.02 1.70 16
33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16
34 H 0.05 2.37 6.83 -2.39 -0.02 2.35 16
35 H 0.09 2.45 6.30 -2.38 -0.02 2.43 16
36 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16
37 H 0.07 2.48 5.94 -2.39 -0.01 2.47 16
38 H 0.02 0.57 8.08 -2.38 -0.02 0.55 16
39 H 0.12 2.30 6.32 -2.39 -0.02 2.29 16
40 H 0.12 2.52 7.67 -2.38 -0.02 2.50 16
41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16
42 H 0.12 1.07 6.02 -2.38 -0.01 1.05 16
43 H 0.04 0.61 8.14 -2.38 -0.02 0.60 16
44 H 0.12 0.84 6.63 -2.39 -0.02 0.82 16
45 H 0.16 1.08 7.14 -2.91 -0.02 1.06 16
46 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16
47 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16
48 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16
49 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16
50 H 0.09 1.83 7.65 -2.39 -0.02 1.81 16
51 H 0.08 1.93 7.06 -2.38 -0.02 1.91 16
52 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16
Total: -1.00 -76.60 399.92 -0.54 -77.14
By element:
Atomic # 1 Polarization: 11.25 SS G_CDS: 0.84 Total: 12.08 kcal
Atomic # 6 Polarization: -1.92 SS G_CDS: 8.12 Total: 6.19 kcal
Atomic # 7 Polarization: -110.03 SS G_CDS: -11.25 Total: -121.28 kcal
Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 1.81 Total: 46.82 kcal
Total: -76.60 -0.54 -77.14 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000161813340.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.887 kcal
(2) G-P(sol) polarization free energy of solvation -76.603 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds