Wall clock time and date at job start Wed Apr 1 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46949 * 2 1 4 4 C 1.50704 * 109.46989 * 119.99370 * 2 1 3 5 5 H 1.07999 * 120.00102 * 120.00039 * 4 2 1 6 6 C 1.37872 * 119.99964 * 300.00078 * 4 2 1 7 7 N 1.31518 * 119.99799 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00259 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47545 * 89.99603 * 8 6 4 10 10 H 1.48499 * 109.46953 * 210.00129 * 8 6 4 11 11 H 1.48505 * 109.46669 * 329.99371 * 8 6 4 12 12 N 1.46494 * 109.47373 * 239.99349 * 2 1 3 13 13 C 1.46496 * 120.00428 * 300.00144 * 12 2 1 14 14 C 1.34785 * 119.99749 * 120.00118 * 12 2 1 15 15 O 1.21279 * 119.99786 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99822 * 180.02562 * 14 12 2 17 17 C 1.52994 * 109.46961 * 179.97438 * 16 14 12 18 18 N 1.46899 * 109.47123 * 179.97438 * 17 16 14 19 19 C 1.46950 * 111.00175 * 189.99791 * 18 17 16 20 20 C 1.53051 * 109.36695 * 183.19167 * 19 18 17 21 21 N 1.46956 * 109.36265 * 301.59619 * 20 19 18 22 22 C 1.38999 * 111.00462 * 183.18839 * 21 20 19 23 23 C 1.39133 * 119.70881 * 180.02562 * 22 21 20 24 24 C 1.38303 * 119.09724 * 180.02562 * 23 22 21 25 25 C 1.38881 * 118.50468 * 359.97438 * 24 23 22 26 26 C 1.38026 * 119.32988 * 0.02562 * 25 24 23 27 27 N 1.31962 * 120.85585 * 359.72465 * 26 25 24 28 28 C 1.46963 * 110.88015 * 59.32021 * 21 20 19 29 29 C 1.46956 * 110.99902 * 313.79988 * 18 17 16 30 30 H 1.08996 * 109.47675 * 300.00461 * 1 2 3 31 31 H 1.09004 * 109.47269 * 60.00782 * 1 2 3 32 32 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99776 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47061 * 270.00284 * 13 12 2 35 35 H 1.08998 * 109.47202 * 29.99730 * 13 12 2 36 36 H 1.09003 * 109.47311 * 149.99769 * 13 12 2 37 37 H 1.08998 * 109.47073 * 59.99488 * 16 14 12 38 38 H 1.09003 * 109.46722 * 300.00075 * 16 14 12 39 39 H 1.08998 * 109.47615 * 59.99856 * 17 16 14 40 40 H 1.09005 * 109.46977 * 299.99643 * 17 16 14 41 41 H 1.09003 * 109.48721 * 63.22201 * 19 18 17 42 42 H 1.09004 * 109.49418 * 303.15816 * 19 18 17 43 43 H 1.09000 * 109.49282 * 181.63575 * 20 19 18 44 44 H 1.08993 * 109.51041 * 61.57601 * 20 19 18 45 45 H 1.07996 * 120.45347 * 359.97438 * 23 22 21 46 46 H 1.08002 * 120.75022 * 180.02562 * 24 23 22 47 47 H 1.08004 * 120.33896 * 180.02562 * 25 24 23 48 48 H 1.08007 * 119.56854 * 179.97438 * 26 25 24 49 49 H 1.09003 * 109.48613 * 60.64622 * 28 21 20 50 50 H 1.08994 * 109.49091 * 180.71076 * 28 21 20 51 51 H 1.08994 * 109.48748 * 296.77590 * 29 18 17 52 52 H 1.09004 * 109.49114 * 56.84813 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4827 7 7 2.1372 -0.8593 3.5566 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8729 2.6996 10 1 0.9758 1.9954 3.9066 11 1 0.8471 2.1766 1.4919 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4278 14 6 2.7933 -0.0357 -2.0832 15 8 3.0858 1.1256 -1.8916 16 6 3.2952 -0.7461 -3.3139 17 6 4.1448 0.2156 -4.1470 18 7 4.6346 -0.4769 -5.3463 19 6 5.6412 0.3321 -6.0475 20 6 6.0665 -0.3868 -7.3300 21 7 6.6035 -1.7119 -6.9906 22 6 7.0670 -2.3673 -8.1254 23 6 7.6147 -3.6412 -8.0106 24 6 8.0724 -4.2814 -9.1478 25 6 7.9662 -3.6242 -10.3666 26 6 7.4119 -2.3608 -10.4074 27 7 6.9788 -1.7758 -9.3066 28 6 5.5969 -2.5211 -6.2893 29 6 5.1715 -1.8021 -5.0068 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9025 -0.5280 4.4376 34 1 2.4158 -2.7377 -0.9714 35 1 0.6905 -2.3003 -0.9845 36 1 1.6239 -2.2854 -2.5000 37 1 2.4473 -1.0884 -3.9071 38 1 3.9006 -1.6027 -3.0174 39 1 4.9928 0.5583 -3.5541 40 1 3.5390 1.0720 -4.4435 41 1 6.5094 0.4708 -5.4033 42 1 5.2159 1.3037 -6.2993 43 1 6.8343 0.1976 -7.8370 44 1 5.2040 -0.5012 -7.9864 45 1 7.6823 -4.1231 -7.0465 46 1 8.5020 -5.2706 -9.0895 47 1 8.3139 -4.0968 -11.2734 48 1 7.3278 -1.8460 -11.3532 49 1 4.7287 -2.6597 -6.9336 50 1 6.0222 -3.4925 -6.0376 51 1 6.0344 -1.6877 -4.3508 52 1 4.4037 -2.3866 -4.4999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:27 Heat of formation + Delta-G solvation = 39.891427 kcal Electronic energy + Delta-G solvation = -30278.568059 eV Core-core repulsion = 26279.169763 eV Total energy + Delta-G solvation = -3999.398296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.04678 -39.58150 -38.81724 -36.17225 -35.43461 -32.89659 -32.88314 -31.95532 -31.07013 -30.58461 -29.46804 -26.66250 -26.23425 -25.11498 -24.72038 -23.45768 -22.85648 -22.30558 -20.69675 -19.99496 -18.31675 -18.05926 -17.10591 -16.74194 -16.39025 -16.21344 -15.75004 -15.66261 -15.39015 -15.08638 -14.80932 -14.75539 -14.62775 -14.19157 -13.93814 -13.69197 -13.49416 -13.10637 -12.90894 -12.82437 -12.36577 -12.30483 -12.24851 -12.15732 -12.08624 -11.73776 -11.62995 -11.52886 -11.25708 -11.12341 -11.07624 -10.78091 -10.69173 -10.34820 -10.14679 -10.11759 -9.79199 -9.65976 -9.35835 -9.03234 -8.64694 -8.50467 -8.39766 -7.73887 -6.15768 -4.16328 0.79003 0.94595 3.10877 3.22337 3.26403 3.36236 3.38917 3.51593 3.54449 3.97370 4.09565 4.34261 4.49217 4.53929 4.70499 4.75747 4.77391 4.88189 4.92201 5.01820 5.06977 5.13925 5.18055 5.19437 5.25614 5.28593 5.36642 5.48951 5.57994 5.61596 5.65007 5.70417 5.75209 5.80193 5.85956 5.94930 6.02381 6.07381 6.14521 6.19377 6.25042 6.32057 6.36718 6.47867 6.77996 6.83377 6.88054 6.93002 7.11425 7.33720 7.62087 7.67016 8.17381 8.46690 8.83372 8.90239 9.45426 10.96954 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028297 B = 0.001831 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.252460 B =15291.587834 C =15701.224214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.228 3.772 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.588 5.588 13 C 0.087 3.913 14 C 0.507 3.493 15 O -0.555 6.555 16 C -0.141 4.141 17 C 0.073 3.927 18 N -0.541 5.541 19 C 0.053 3.947 20 C 0.073 3.927 21 N -0.480 5.480 22 C 0.316 3.684 23 C -0.188 4.188 24 C -0.054 4.054 25 C -0.207 4.207 26 C 0.125 3.875 27 N -0.521 5.521 28 C 0.064 3.936 29 C 0.046 3.954 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.266 0.734 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.132 0.868 48 H 0.155 0.845 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.048 0.952 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.393 -7.612 -27.337 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.126 3.874 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.319 5.319 13 C -0.057 4.057 14 C 0.294 3.706 15 O -0.435 6.435 16 C -0.182 4.182 17 C -0.054 4.054 18 N -0.266 5.266 19 C -0.076 4.076 20 C -0.054 4.054 21 N -0.197 5.197 22 C 0.084 3.916 23 C -0.210 4.210 24 C -0.080 4.080 25 C -0.228 4.228 26 C -0.032 4.032 27 N -0.235 5.235 28 C -0.062 4.062 29 C -0.082 4.082 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.150 0.850 48 H 0.172 0.828 49 H 0.074 0.926 50 H 0.105 0.895 51 H 0.066 0.934 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.124 -6.143 -26.980 28.838 hybrid contribution -0.043 -0.273 0.476 0.551 sum 8.081 -6.416 -26.503 28.441 Atomic orbital electron populations 1.22456 0.99153 1.01030 0.99270 1.19284 0.89937 0.95228 0.82921 0.91990 1.21154 1.32657 1.14178 0.88494 0.90418 1.24877 0.95707 0.96603 0.95651 1.69877 1.45246 1.40197 0.97958 0.86906 0.80400 0.83845 0.77484 1.20416 1.22138 1.18819 1.47871 1.49248 1.11856 1.22911 1.21600 1.01856 0.82741 0.99513 1.20358 0.78902 0.87045 0.84332 1.90647 1.58369 1.17296 1.77159 1.21795 1.01273 0.99702 0.95400 1.21831 0.98422 0.96320 0.88859 1.62288 1.36310 1.03167 1.24874 1.22250 0.93742 0.96822 0.94745 1.22048 0.99510 0.87594 0.96262 1.59310 1.36395 1.04793 1.19250 1.19892 0.93802 0.89931 0.87950 1.21590 1.03724 0.95530 1.00201 1.21458 0.94995 0.99501 0.92046 1.21996 1.04620 0.97236 0.98921 1.22539 0.92483 0.92175 0.96010 1.67636 1.19981 1.37834 0.98097 1.22365 0.92476 0.96040 0.95310 1.22336 0.99252 0.91099 0.95530 0.93174 0.94796 0.92547 0.92450 0.92845 0.90838 0.92603 0.88570 0.89122 0.93586 0.89638 0.93735 0.89549 0.89356 0.92231 0.84615 0.84746 0.84966 0.82808 0.92626 0.89468 0.93397 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.65 37.16 0.32 -3.13 16 2 C 0.23 5.48 2.23 -69.08 -0.15 5.33 16 3 H 0.06 1.67 5.96 -51.93 -0.31 1.36 16 4 C -0.53 -14.51 8.95 -34.44 -0.31 -14.82 16 5 H 0.08 2.30 7.89 -52.49 -0.41 1.88 16 6 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 8 Si 0.88 21.89 24.37 -169.99 -4.14 17.75 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.59 -11.81 2.75 -175.26 -0.48 -12.29 16 13 C 0.09 1.35 9.48 59.84 0.57 1.92 16 14 C 0.51 9.75 7.67 -10.98 -0.08 9.66 16 15 O -0.56 -12.86 15.31 5.56 0.09 -12.77 16 16 C -0.14 -1.91 3.51 -27.88 -0.10 -2.00 16 17 C 0.07 0.97 4.57 -3.83 -0.02 0.95 16 18 N -0.54 -6.05 4.86 -234.47 -1.14 -7.19 16 19 C 0.05 0.55 5.58 -3.77 -0.02 0.53 16 20 C 0.07 0.75 4.79 -3.77 -0.02 0.73 16 21 N -0.48 -4.89 4.73 -173.04 -0.82 -5.71 16 22 C 0.32 3.19 6.40 -155.02 -0.99 2.20 16 23 C -0.19 -1.53 9.21 -39.23 -0.36 -1.89 16 24 C -0.05 -0.35 10.17 -39.32 -0.40 -0.75 16 25 C -0.21 -1.31 10.10 -39.42 -0.40 -1.71 16 26 C 0.13 0.97 11.17 -17.57 -0.20 0.78 16 27 N -0.52 -5.37 8.71 -12.44 -0.11 -5.48 16 28 C 0.06 0.57 5.37 -3.76 -0.02 0.55 16 29 C 0.05 0.45 4.93 -3.77 -0.02 0.43 16 30 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.11 6.66 -51.93 -0.35 0.77 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.15 6.43 -51.93 -0.33 0.82 16 36 H 0.06 0.65 6.44 -51.93 -0.33 0.32 16 37 H 0.10 1.12 7.40 -51.93 -0.38 0.74 16 38 H 0.09 1.09 6.22 -51.93 -0.32 0.77 16 39 H 0.05 0.68 8.04 -51.93 -0.42 0.27 16 40 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.92 7.83 -51.93 -0.41 0.51 16 44 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 45 H 0.14 0.92 7.17 -52.49 -0.38 0.54 16 46 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 47 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 48 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.63 6.79 -51.93 -0.35 0.28 16 51 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.09 0.82 5.99 -51.93 -0.31 0.51 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -33.94 397.00 -10.45 -44.39 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.30 Total: 0.65 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.30 Total: 0.79 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -1.78 Total: -56.80 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.94 -10.45 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.286 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds