Wall clock time and date at job start Wed Apr 1 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47400 * 2 1 4 4 C 1.50707 * 109.46975 * 120.00123 * 2 1 3 5 5 H 1.07993 * 120.00049 * 119.99497 * 4 2 1 6 6 C 1.37872 * 119.99746 * 299.99837 * 4 2 1 7 7 N 1.31517 * 120.00355 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99886 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46920 * 60.00076 * 8 6 4 10 10 H 1.48505 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46843 * 299.99605 * 8 6 4 12 12 N 1.46896 * 109.46969 * 239.99617 * 2 1 3 13 13 C 1.46897 * 111.00487 * 306.05013 * 12 2 1 14 14 C 1.46904 * 110.99832 * 70.00234 * 12 2 1 15 15 C 1.50701 * 109.46916 * 169.99653 * 14 12 2 16 16 O 1.21293 * 120.00054 * 0.02562 * 15 14 12 17 17 N 1.34780 * 119.99756 * 180.02562 * 15 14 12 18 18 C 1.40183 * 119.99938 * 174.73693 * 17 15 14 19 19 C 1.39413 * 120.40314 * 327.33560 * 18 17 15 20 20 C 1.38260 * 118.44738 * 179.97438 * 19 18 17 21 21 C 1.39114 * 119.16541 * 359.97438 * 20 19 18 22 22 N 1.39219 * 119.62847 * 179.97438 * 21 20 19 23 23 C 1.46856 * 110.99738 * 304.21039 * 22 21 20 24 24 C 1.53036 * 109.52400 * 174.15986 * 23 22 21 25 25 C 1.53125 * 109.27513 * 59.17919 * 24 23 22 26 26 C 1.53113 * 109.15984 * 302.34431 * 25 24 23 27 27 C 1.46842 * 111.00012 * 180.02562 * 22 21 20 28 28 N 1.32340 * 120.74350 * 0.02562 * 21 20 19 29 29 C 1.31971 * 121.69224 * 359.72416 * 28 21 20 30 30 H 1.09002 * 109.47075 * 300.00133 * 1 2 3 31 31 H 1.08998 * 109.46880 * 59.99920 * 1 2 3 32 32 H 1.09001 * 109.47400 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00259 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47243 * 183.95276 * 13 12 2 35 35 H 1.08999 * 109.47072 * 303.95685 * 13 12 2 36 36 H 1.09003 * 109.46902 * 63.95001 * 13 12 2 37 37 H 1.08997 * 109.47118 * 289.99797 * 14 12 2 38 38 H 1.09000 * 109.46537 * 49.99935 * 14 12 2 39 39 H 0.96999 * 119.99929 * 354.73099 * 17 15 14 40 40 H 1.08001 * 120.78059 * 359.95504 * 19 18 17 41 41 H 1.08001 * 120.41696 * 179.97438 * 20 19 18 42 42 H 1.08998 * 109.45963 * 294.17866 * 23 22 21 43 43 H 1.08997 * 109.46075 * 54.14122 * 23 22 21 44 44 H 1.08997 * 109.50316 * 299.23863 * 24 23 22 45 45 H 1.09000 * 109.50443 * 179.11935 * 24 23 22 46 46 H 1.09001 * 109.51695 * 182.43991 * 25 24 23 47 47 H 1.08995 * 109.57481 * 62.28221 * 25 24 23 48 48 H 1.08998 * 109.50748 * 297.71496 * 26 25 24 49 49 H 1.09008 * 109.53889 * 177.61787 * 26 25 24 50 50 H 1.08994 * 109.46622 * 305.85032 * 27 22 21 51 51 H 1.09000 * 109.46325 * 65.83392 * 27 22 21 52 52 H 1.08003 * 119.62381 * 180.26640 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4774 -0.5164 -3.5793 16 8 3.1495 -1.5137 -3.4214 17 7 2.3786 0.0431 -4.8015 18 6 3.1385 -0.4606 -5.8665 19 6 4.4038 -0.9993 -5.6376 20 6 5.1179 -1.4851 -6.7173 21 6 4.5538 -1.4212 -7.9873 22 7 5.2645 -1.9071 -9.0814 23 6 6.5793 -1.2608 -9.1838 24 6 7.3870 -1.9195 -10.3045 25 6 6.6250 -1.7810 -11.6254 26 6 5.2412 -2.4193 -11.4766 27 6 4.4959 -1.7457 -10.3221 28 7 3.3495 -0.9029 -8.1674 29 6 2.6384 -0.4346 -7.1591 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.7089 1.1614 3.4844 34 1 1.8664 -2.5521 -2.1648 35 1 1.6465 -2.5988 -0.3991 36 1 0.3555 -1.9520 -1.4398 37 1 0.6814 0.1052 -2.6087 38 1 2.1025 1.1188 -2.2603 39 1 1.7817 0.7942 -4.9443 40 1 4.8168 -1.0360 -4.6404 41 1 6.1013 -1.9088 -6.5764 42 1 6.4471 -0.2018 -9.4055 43 1 7.1123 -1.3702 -8.2394 44 1 7.5313 -2.9755 -10.0766 45 1 8.3567 -1.4293 -10.3906 46 1 7.1760 -2.2865 -12.4184 47 1 6.5144 -0.7256 -11.8743 48 1 5.3518 -3.4832 -11.2672 49 1 4.6774 -2.2869 -12.4002 50 1 3.5155 -2.2072 -10.2046 51 1 4.3741 -0.6843 -10.5384 52 1 1.6572 -0.0226 -7.3436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182458709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:17 Heat of formation + Delta-G solvation = 25.215363 kcal Electronic energy + Delta-G solvation = -30064.304679 eV Core-core repulsion = 26064.269982 eV Total energy + Delta-G solvation = -4000.034698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.11816 -39.90069 -38.46322 -36.79835 -35.09577 -33.49982 -32.76415 -32.43281 -31.10521 -29.74736 -28.69372 -27.23693 -25.24687 -25.09267 -24.49703 -23.89928 -22.71959 -22.19263 -20.53278 -20.01737 -19.32220 -18.05101 -17.49886 -17.06296 -16.36738 -15.98993 -15.52611 -15.21871 -15.10723 -14.79685 -14.63798 -14.50997 -14.28298 -14.13324 -13.83717 -13.64096 -13.59884 -13.26411 -13.03986 -12.74993 -12.57684 -12.49802 -12.44700 -11.64786 -11.59888 -11.31351 -11.09777 -11.05569 -10.89933 -10.88147 -10.82141 -10.75022 -10.72376 -10.49655 -10.16397 -10.04984 -9.93815 -9.80347 -9.49111 -9.12152 -8.90111 -8.39765 -7.84158 -7.21317 -6.02878 -4.05831 0.94310 1.20044 2.75964 2.97717 3.27287 3.33733 3.37226 3.41528 3.72486 4.23717 4.41087 4.42296 4.51113 4.53151 4.73200 4.82365 4.83754 4.96247 5.01901 5.04317 5.13157 5.17566 5.24513 5.29572 5.33351 5.49472 5.50399 5.51079 5.57245 5.67467 5.67895 5.73771 5.75441 5.86953 5.95319 5.99940 6.17191 6.30378 6.38470 6.51049 6.57896 6.64670 6.77049 6.94830 7.00903 7.04050 7.27988 7.42885 7.66220 7.81694 7.82604 8.05206 8.28433 8.33863 8.53656 9.00097 9.59081 11.04388 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029093 B = 0.001766 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.198291 B =15852.102130 C =16396.123295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.516 5.516 13 C 0.030 3.970 14 C 0.038 3.962 15 C 0.514 3.486 16 O -0.498 6.498 17 N -0.678 5.678 18 C 0.084 3.916 19 C -0.057 4.057 20 C -0.162 4.162 21 C 0.286 3.714 22 N -0.474 5.474 23 C 0.058 3.942 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.122 4.122 27 C 0.068 3.932 28 N -0.502 5.502 29 C 0.095 3.905 30 H 0.090 0.910 31 H 0.005 0.995 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.012 0.988 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.410 0.590 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.046 0.954 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 -0.512 -27.352 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.240 5.240 13 C -0.119 4.119 14 C -0.094 4.094 15 C 0.302 3.698 16 O -0.370 6.370 17 N -0.326 5.326 18 C -0.013 4.013 19 C -0.085 4.085 20 C -0.185 4.185 21 C 0.054 3.946 22 N -0.192 5.192 23 C -0.068 4.068 24 C -0.156 4.156 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.059 4.059 28 N -0.215 5.215 29 C -0.065 4.065 30 H 0.108 0.892 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.246 0.754 40 H 0.168 0.832 41 H 0.155 0.845 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.065 0.935 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.656 -1.649 -27.759 28.842 hybrid contribution -0.868 0.772 1.514 1.908 sum 6.788 -0.877 -26.245 27.122 Atomic orbital electron populations 1.22432 1.00694 0.99630 1.00496 1.19386 0.89827 0.94485 0.85799 0.94250 1.21044 1.30544 1.12556 0.89410 0.91839 1.24917 0.95236 0.95161 0.99004 1.69864 1.37111 1.23054 1.23549 0.86549 0.79275 0.79597 0.81923 1.20204 1.21430 1.20348 1.62124 1.59118 1.02356 1.00446 1.22379 0.95422 0.91448 1.02618 1.21939 0.97826 0.99145 0.90462 1.21357 0.81513 0.83806 0.83123 1.90665 1.39081 1.23770 1.83490 1.43681 1.44761 1.35862 1.08258 1.18709 0.92124 1.01600 0.88914 1.21577 0.91567 0.94983 1.00347 1.21472 1.02170 1.03812 0.91086 1.19746 0.90881 0.93095 0.90913 1.59197 1.04003 1.53078 1.02957 1.22271 0.87998 0.96109 1.00418 1.21621 0.97998 1.01996 0.93956 1.21612 0.96230 1.00915 0.97371 1.21682 0.95840 1.00785 0.97646 1.21951 0.96982 0.99895 0.87065 1.67515 1.07686 1.11939 1.34387 1.22251 0.98893 0.98451 0.86922 0.89166 0.97574 0.94796 0.92951 0.92084 0.90766 0.96996 0.92486 0.88158 0.75384 0.83177 0.84472 0.93819 0.89809 0.90736 0.90970 0.91605 0.92135 0.91070 0.91173 0.89633 0.93525 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.22 37.16 0.31 -3.70 16 2 C 0.21 5.14 2.31 -68.86 -0.16 4.98 16 3 H 0.04 1.03 7.93 -51.93 -0.41 0.62 16 4 C -0.50 -13.50 7.91 -34.44 -0.27 -13.78 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.52 -11.04 4.44 -237.73 -1.06 -12.09 16 13 C 0.03 0.61 8.34 60.06 0.50 1.11 16 14 C 0.04 0.63 5.02 -4.97 -0.02 0.61 16 15 C 0.51 8.00 7.32 -10.98 -0.08 7.92 16 16 O -0.50 -9.49 12.00 5.55 0.07 -9.42 16 17 N -0.68 -7.89 5.36 -9.73 -0.05 -7.94 16 18 C 0.08 1.04 6.31 -83.46 -0.53 0.51 16 19 C -0.06 -0.75 8.76 -39.14 -0.34 -1.09 16 20 C -0.16 -1.92 9.18 -39.25 -0.36 -2.28 16 21 C 0.29 3.38 6.41 -154.87 -0.99 2.39 16 22 N -0.47 -4.77 4.68 -173.18 -0.81 -5.58 16 23 C 0.06 0.46 5.25 -3.83 -0.02 0.44 16 24 C -0.12 -0.73 6.09 -26.65 -0.16 -0.89 16 25 C -0.12 -0.73 6.00 -26.61 -0.16 -0.89 16 26 C -0.12 -0.83 6.09 -26.65 -0.16 -0.99 16 27 C 0.07 0.62 4.65 -3.83 -0.02 0.60 16 28 N -0.50 -6.08 8.67 -12.25 -0.11 -6.18 16 29 C 0.09 1.05 11.11 -17.35 -0.19 0.86 16 30 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 31 H 0.01 0.11 6.91 -51.93 -0.36 -0.25 16 32 H 0.03 0.77 6.42 -51.93 -0.33 0.44 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.06 1.23 5.88 -51.93 -0.31 0.92 16 35 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 36 H 0.01 0.23 6.46 -51.93 -0.34 -0.10 16 37 H 0.06 0.87 7.06 -51.93 -0.37 0.50 16 38 H 0.10 1.53 7.93 -51.93 -0.41 1.12 16 39 H 0.41 3.32 8.82 -40.82 -0.36 2.96 16 40 H 0.15 2.21 6.47 -52.49 -0.34 1.87 16 41 H 0.14 1.37 7.14 -52.49 -0.37 1.00 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.62 6.67 -51.93 -0.35 0.27 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 50 H 0.09 0.87 7.71 -51.93 -0.40 0.47 16 51 H 0.05 0.44 8.11 -51.93 -0.42 0.02 16 52 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -31.34 398.43 -11.43 -42.77 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.32 Total: 3.20 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.76 Total: -2.72 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -1.40 Total: -56.16 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.34 -11.43 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182458709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.986 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds