Wall clock time and date at job start Wed Apr 1 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47400 * 2 1 4 4 C 1.50707 * 109.46975 * 120.00123 * 2 1 3 5 5 H 1.07993 * 120.00049 * 119.99497 * 4 2 1 6 6 C 1.37872 * 119.99746 * 299.99837 * 4 2 1 7 7 N 1.31517 * 120.00355 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99886 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46920 * 60.00076 * 8 6 4 10 10 H 1.48505 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46843 * 299.99605 * 8 6 4 12 12 N 1.46896 * 109.46969 * 239.99617 * 2 1 3 13 13 C 1.46897 * 111.00487 * 306.05013 * 12 2 1 14 14 C 1.46904 * 110.99832 * 70.00234 * 12 2 1 15 15 C 1.50701 * 109.46916 * 169.99653 * 14 12 2 16 16 O 1.21293 * 120.00054 * 0.02562 * 15 14 12 17 17 N 1.34780 * 119.99756 * 180.02562 * 15 14 12 18 18 C 1.40183 * 119.99938 * 174.73693 * 17 15 14 19 19 C 1.39413 * 120.40314 * 327.33560 * 18 17 15 20 20 C 1.38260 * 118.44738 * 179.97438 * 19 18 17 21 21 C 1.39114 * 119.16541 * 359.97438 * 20 19 18 22 22 N 1.39219 * 119.62847 * 179.97438 * 21 20 19 23 23 C 1.46856 * 110.99738 * 304.21039 * 22 21 20 24 24 C 1.53036 * 109.52400 * 174.15986 * 23 22 21 25 25 C 1.53125 * 109.27513 * 59.17919 * 24 23 22 26 26 C 1.53113 * 109.15984 * 302.34431 * 25 24 23 27 27 C 1.46842 * 111.00012 * 180.02562 * 22 21 20 28 28 N 1.32340 * 120.74350 * 0.02562 * 21 20 19 29 29 C 1.31971 * 121.69224 * 359.72416 * 28 21 20 30 30 H 1.09002 * 109.47075 * 300.00133 * 1 2 3 31 31 H 1.08998 * 109.46880 * 59.99920 * 1 2 3 32 32 H 1.09001 * 109.47400 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00259 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47243 * 183.95276 * 13 12 2 35 35 H 1.08999 * 109.47072 * 303.95685 * 13 12 2 36 36 H 1.09003 * 109.46902 * 63.95001 * 13 12 2 37 37 H 1.08997 * 109.47118 * 289.99797 * 14 12 2 38 38 H 1.09000 * 109.46537 * 49.99935 * 14 12 2 39 39 H 0.96999 * 119.99929 * 354.73099 * 17 15 14 40 40 H 1.08001 * 120.78059 * 359.95504 * 19 18 17 41 41 H 1.08001 * 120.41696 * 179.97438 * 20 19 18 42 42 H 1.08998 * 109.45963 * 294.17866 * 23 22 21 43 43 H 1.08997 * 109.46075 * 54.14122 * 23 22 21 44 44 H 1.08997 * 109.50316 * 299.23863 * 24 23 22 45 45 H 1.09000 * 109.50443 * 179.11935 * 24 23 22 46 46 H 1.09001 * 109.51695 * 182.43991 * 25 24 23 47 47 H 1.08995 * 109.57481 * 62.28221 * 25 24 23 48 48 H 1.08998 * 109.50748 * 297.71496 * 26 25 24 49 49 H 1.09008 * 109.53889 * 177.61787 * 26 25 24 50 50 H 1.08994 * 109.46622 * 305.85032 * 27 22 21 51 51 H 1.09000 * 109.46325 * 65.83392 * 27 22 21 52 52 H 1.08003 * 119.62381 * 180.26640 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4774 -0.5164 -3.5793 16 8 3.1495 -1.5137 -3.4214 17 7 2.3786 0.0431 -4.8015 18 6 3.1385 -0.4606 -5.8665 19 6 4.4038 -0.9993 -5.6376 20 6 5.1179 -1.4851 -6.7173 21 6 4.5538 -1.4212 -7.9873 22 7 5.2645 -1.9071 -9.0814 23 6 6.5793 -1.2608 -9.1838 24 6 7.3870 -1.9195 -10.3045 25 6 6.6250 -1.7810 -11.6254 26 6 5.2412 -2.4193 -11.4766 27 6 4.4959 -1.7457 -10.3221 28 7 3.3495 -0.9029 -8.1674 29 6 2.6384 -0.4346 -7.1591 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.7089 1.1614 3.4844 34 1 1.8664 -2.5521 -2.1648 35 1 1.6465 -2.5988 -0.3991 36 1 0.3555 -1.9520 -1.4398 37 1 0.6814 0.1052 -2.6087 38 1 2.1025 1.1188 -2.2603 39 1 1.7817 0.7942 -4.9443 40 1 4.8168 -1.0360 -4.6404 41 1 6.1013 -1.9088 -6.5764 42 1 6.4471 -0.2018 -9.4055 43 1 7.1123 -1.3702 -8.2394 44 1 7.5313 -2.9755 -10.0766 45 1 8.3567 -1.4293 -10.3906 46 1 7.1760 -2.2865 -12.4184 47 1 6.5144 -0.7256 -11.8743 48 1 5.3518 -3.4832 -11.2672 49 1 4.6774 -2.2869 -12.4002 50 1 3.5155 -2.2072 -10.2046 51 1 4.3741 -0.6843 -10.5384 52 1 1.6572 -0.0226 -7.3436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182458709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:16 Heat of formation + Delta-G solvation = 5.206271 kcal Electronic energy + Delta-G solvation = -30065.172339 eV Core-core repulsion = 26064.269982 eV Total energy + Delta-G solvation = -4000.902357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.05713 -40.97595 -39.37820 -38.36422 -36.14546 -34.70357 -34.25983 -33.38338 -31.75277 -31.19752 -30.07513 -28.60187 -27.24838 -26.10767 -25.51259 -25.06390 -23.47260 -23.14922 -21.74070 -20.98174 -20.65128 -19.02303 -18.49591 -18.28181 -17.97076 -17.30384 -16.80068 -16.43271 -16.13149 -15.96833 -15.70109 -15.60460 -15.36565 -15.20831 -14.89266 -14.67557 -14.44161 -14.38484 -14.24683 -14.16088 -13.91281 -13.47619 -13.40391 -13.10184 -12.89509 -12.80377 -12.59479 -12.54312 -12.33081 -12.18654 -12.04079 -12.01347 -11.87206 -11.61723 -11.44071 -11.40198 -11.12432 -10.91849 -10.74064 -10.56072 -10.47092 -10.06894 -8.86939 -8.73089 -8.10158 -6.19291 0.01218 0.24514 1.43501 1.44387 1.52065 1.57791 1.90854 2.44410 2.47615 2.82051 3.19166 3.41233 3.46365 3.71991 3.83487 3.89213 3.95205 3.96854 4.05571 4.17570 4.29150 4.35288 4.39665 4.43624 4.52570 4.59120 4.62059 4.65732 4.71200 4.73205 4.83387 4.86230 4.89235 4.92883 4.93804 5.07079 5.10217 5.13272 5.18534 5.21959 5.26448 5.30112 5.45829 5.51701 5.63307 5.71689 5.79326 5.80988 6.15831 6.18185 6.37385 6.46003 6.71607 6.91730 6.92853 7.17542 7.49155 8.95306 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029093 B = 0.001766 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.198291 B =15852.102130 C =16396.123295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.216 3.784 3 H 0.018 0.982 4 C -0.516 4.516 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.536 5.536 13 C 0.042 3.958 14 C 0.038 3.962 15 C 0.520 3.480 16 O -0.539 6.539 17 N -0.655 5.655 18 C 0.069 3.931 19 C -0.070 4.070 20 C -0.167 4.167 21 C 0.282 3.718 22 N -0.480 5.480 23 C 0.056 3.944 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.117 4.117 27 C 0.070 3.930 28 N -0.513 5.513 29 C 0.105 3.895 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.021 0.979 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.429 0.571 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.041 0.959 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.979 -0.258 -29.361 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.036 0.964 4 C -0.554 4.554 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.260 5.260 13 C -0.107 4.107 14 C -0.093 4.093 15 C 0.308 3.692 16 O -0.414 6.414 17 N -0.304 5.304 18 C -0.028 4.028 19 C -0.098 4.098 20 C -0.190 4.190 21 C 0.050 3.950 22 N -0.199 5.199 23 C -0.070 4.070 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.057 4.057 28 N -0.227 5.227 29 C -0.055 4.055 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.269 0.731 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.089 0.911 51 H 0.060 0.940 52 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.664 -1.368 -29.821 30.821 hybrid contribution -0.837 0.701 2.012 2.289 sum 6.827 -0.667 -27.810 28.643 Atomic orbital electron populations 1.22219 0.99687 0.99356 1.00624 1.19141 0.90439 0.93112 0.86379 0.96391 1.21301 1.30599 1.12398 0.91114 0.93327 1.25584 0.95468 0.95856 1.01462 1.69968 1.37692 1.23867 1.24056 0.85671 0.78612 0.78679 0.78988 1.20183 1.20722 1.20037 1.61913 1.59726 1.02888 1.01427 1.22222 0.95907 0.91030 1.01498 1.21992 0.99380 0.99037 0.88921 1.21087 0.80893 0.83296 0.83911 1.90660 1.40884 1.25632 1.84225 1.43314 1.44405 1.35808 1.06883 1.18775 0.92045 1.02600 0.89411 1.21525 0.92509 0.95953 0.99834 1.21566 1.02708 1.03902 0.90861 1.20012 0.90993 0.92474 0.91487 1.59250 1.04751 1.52983 1.02876 1.22377 0.87124 0.96029 1.01438 1.21630 0.98474 1.01755 0.93361 1.21617 0.95611 1.01121 0.97590 1.21668 0.96450 1.00248 0.97159 1.21946 0.96646 0.99646 0.87417 1.67616 1.07980 1.12444 1.34691 1.22687 0.99669 0.97154 0.85979 0.91835 0.94527 0.95121 0.92916 0.91642 0.93162 0.96014 0.90268 0.86857 0.73114 0.85153 0.83318 0.94034 0.89539 0.91066 0.89280 0.90176 0.91923 0.91543 0.89867 0.91106 0.94026 0.79602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.28 8.22 71.98 0.59 -6.68 16 2 C 0.22 10.58 2.31 44.17 0.10 10.68 16 3 H 0.02 0.96 7.93 -2.39 -0.02 0.94 16 4 C -0.52 -28.47 7.91 25.60 0.20 -28.27 16 5 H 0.05 2.77 7.12 -2.91 -0.02 2.75 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -51.41 11.32 21.45 0.24 -51.16 16 8 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.54 -22.81 4.44 -906.03 -4.02 -26.84 16 13 C 0.04 1.72 8.34 127.69 1.06 2.78 16 14 C 0.04 1.20 5.02 85.56 0.43 1.63 16 15 C 0.52 15.68 7.32 87.66 0.64 16.32 16 16 O -0.54 -20.60 12.00 -3.07 -0.04 -20.64 16 17 N -0.66 -14.12 5.36 -303.07 -1.62 -15.75 16 18 C 0.07 1.63 6.31 38.18 0.24 1.87 16 19 C -0.07 -1.86 8.76 22.56 0.20 -1.66 16 20 C -0.17 -3.92 9.18 22.49 0.21 -3.71 16 21 C 0.28 6.48 6.41 133.00 0.85 7.34 16 22 N -0.48 -9.24 4.68 -701.82 -3.29 -12.53 16 23 C 0.06 0.82 5.25 86.32 0.45 1.27 16 24 C -0.11 -1.20 6.09 30.65 0.19 -1.01 16 25 C -0.12 -1.17 6.00 30.67 0.18 -0.99 16 26 C -0.12 -1.41 6.09 30.65 0.19 -1.23 16 27 C 0.07 1.21 4.65 86.33 0.40 1.61 16 28 N -0.51 -11.80 8.67 -192.68 -1.67 -13.47 16 29 C 0.11 2.14 11.11 84.76 0.94 3.08 16 30 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 31 H 0.04 1.40 6.91 -2.39 -0.02 1.38 16 32 H 0.03 1.37 6.42 -2.39 -0.02 1.36 16 33 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.07 2.64 5.88 -2.39 -0.01 2.63 16 35 H 0.05 2.27 6.76 -2.39 -0.02 2.25 16 36 H 0.02 0.83 6.46 -2.39 -0.02 0.82 16 37 H 0.08 2.18 7.06 -2.39 -0.02 2.17 16 38 H 0.11 3.28 7.93 -2.39 -0.02 3.26 16 39 H 0.43 5.78 8.82 -92.71 -0.82 4.97 16 40 H 0.13 3.99 6.47 -2.91 -0.02 3.97 16 41 H 0.15 2.97 7.14 -2.91 -0.02 2.95 16 42 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 1.20 6.67 -2.39 -0.02 1.18 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 49 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.07 1.41 7.71 -2.39 -0.02 1.39 16 51 H 0.04 0.75 8.11 -2.39 -0.02 0.73 16 52 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -68.15 398.43 -0.93 -69.08 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.11 Total: 20.90 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 7.33 Total: 4.31 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -10.36 Total: -119.74 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.04 Total: -20.64 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.15 -0.93 -69.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182458709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.288 kcal (2) G-P(sol) polarization free energy of solvation -68.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds