Wall clock time and date at job start Wed Apr 1 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47398 * 2 1 4 4 C 1.53006 * 109.47301 * 119.99862 * 2 1 3 5 5 N 1.46899 * 109.47047 * 296.88648 * 4 2 1 6 6 C 1.46953 * 111.00172 * 183.96541 * 5 4 2 7 7 C 1.53054 * 109.36267 * 183.18476 * 6 5 4 8 8 N 1.46953 * 109.36885 * 301.60110 * 7 6 5 9 9 C 1.39675 * 110.99952 * 183.18939 * 8 7 6 10 10 C 1.38912 * 120.07077 * 179.97438 * 9 8 7 11 11 C 1.38108 * 119.92289 * 180.02562 * 10 9 8 12 12 C 1.38291 * 120.07413 * 0.02562 * 11 10 9 13 13 C 1.38281 * 120.14824 * 359.97438 * 12 11 10 14 14 C 1.38109 * 120.08050 * 0.02562 * 13 12 11 15 15 C 1.46953 * 110.88097 * 59.31960 * 8 7 6 16 16 C 1.46967 * 110.99923 * 307.76693 * 5 4 2 17 17 N 1.46500 * 109.47232 * 239.99854 * 2 1 3 18 18 C 1.34776 * 120.00347 * 88.69658 * 17 2 1 19 19 O 1.21591 * 119.99550 * 0.02562 * 18 17 2 20 20 N 1.34770 * 119.99979 * 180.02562 * 18 17 2 21 21 C 1.46508 * 119.99723 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.47201 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00018 * 0.02562 * 22 21 20 24 24 C 1.37873 * 120.00086 * 180.02562 * 22 21 20 25 25 N 1.31516 * 120.00002 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00004 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47022 * 60.00149 * 26 24 22 28 28 H 1.48496 * 109.47036 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47137 * 300.00333 * 26 24 22 30 30 H 1.09005 * 109.47174 * 60.00318 * 1 2 3 31 31 H 1.09002 * 109.47521 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47539 * 300.00050 * 1 2 3 33 33 H 1.08994 * 109.47477 * 176.88612 * 4 2 1 34 34 H 1.08998 * 109.46877 * 56.87988 * 4 2 1 35 35 H 1.09001 * 109.48602 * 63.22449 * 6 5 4 36 36 H 1.08994 * 109.49260 * 303.15619 * 6 5 4 37 37 H 1.09005 * 109.48493 * 181.63509 * 7 6 5 38 38 H 1.09003 * 109.48785 * 61.57397 * 7 6 5 39 39 H 1.08001 * 120.03785 * 0.02562 * 10 9 8 40 40 H 1.07999 * 119.96157 * 179.97438 * 11 10 9 41 41 H 1.07998 * 119.92447 * 179.72226 * 12 11 10 42 42 H 1.08000 * 119.96328 * 179.97438 * 13 12 11 43 43 H 1.07997 * 120.04226 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.48602 * 60.64433 * 15 8 7 45 45 H 1.08994 * 109.49260 * 180.71263 * 15 8 7 46 46 H 1.08999 * 109.48466 * 296.77984 * 16 5 4 47 47 H 1.09005 * 109.48396 * 56.84265 * 16 5 4 48 48 H 0.97008 * 119.99851 * 268.69922 * 17 2 1 49 49 H 0.96995 * 120.00395 * 359.97438 * 20 18 17 50 50 H 1.08998 * 109.47346 * 300.00186 * 21 20 18 51 51 H 1.09001 * 109.46915 * 59.99987 * 21 20 18 52 52 H 0.96995 * 119.99983 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6127 0.0134 2.4475 6 6 2.1640 -0.5983 3.6647 7 6 1.6328 0.1462 4.8920 8 7 2.0081 1.5641 4.8021 9 6 1.6018 2.2626 5.9414 10 6 1.8629 3.6223 6.0543 11 6 1.4603 4.3098 7.1824 12 6 0.7984 3.6460 8.1991 13 6 0.5369 2.2926 8.0899 14 6 0.9367 1.5989 6.9646 15 6 1.4568 2.1757 3.5849 16 6 1.9881 1.4314 2.3576 17 7 2.0183 -0.6906 -1.1961 18 6 2.2179 -0.0023 -2.3375 19 8 1.9931 1.1921 -2.3743 20 7 2.6667 -0.6378 -3.4380 21 6 2.8831 0.1105 -4.6789 22 6 3.3819 -0.8256 -5.7494 23 1 3.5231 -1.8732 -5.5279 24 6 3.6579 -0.3447 -7.0117 25 7 3.4865 0.9311 -7.2814 26 14 4.2768 -1.5049 -8.3386 27 1 3.2698 -2.5709 -8.5731 28 1 4.4961 -0.7465 -9.5963 29 1 5.5558 -2.1197 -7.9012 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.1285 -0.7698 1.2219 34 1 1.6317 -1.7315 1.2777 35 1 3.2519 -0.5341 3.6433 36 1 1.8620 -1.6443 3.7150 37 1 2.0632 -0.2874 5.7947 38 1 0.5468 0.0590 4.9284 39 1 2.3801 4.1412 5.2608 40 1 1.6633 5.3668 7.2710 41 1 0.4886 4.1851 9.0822 42 1 0.0202 1.7771 8.8859 43 1 0.7318 0.5419 6.8798 44 1 0.3689 2.1116 3.6064 45 1 1.7588 3.2218 3.5347 46 1 3.0739 1.5185 2.3213 47 1 1.5577 1.8649 1.4548 48 1 2.1979 -1.6435 -1.1667 49 1 2.8464 -1.5905 -3.4085 50 1 1.9441 0.5615 -4.9997 51 1 3.6221 0.8931 -4.5070 52 1 3.6810 1.2694 -8.1694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426419859.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:46 Heat of formation + Delta-G solvation = 16.040513 kcal Electronic energy + Delta-G solvation = -29732.409314 eV Core-core repulsion = 25731.976765 eV Total energy + Delta-G solvation = -4000.432549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.77747 -39.49675 -38.59779 -36.52981 -34.59700 -33.95058 -32.37066 -31.99825 -30.91601 -30.78895 -29.55892 -27.30199 -26.93951 -24.89510 -24.52714 -22.78815 -22.28722 -21.93230 -20.75525 -20.13513 -19.92615 -18.26465 -17.93596 -16.52970 -16.14364 -16.00653 -15.71807 -15.51263 -15.26915 -15.08421 -14.84666 -14.67992 -14.45916 -14.27917 -14.09200 -13.84750 -13.60361 -13.54691 -13.00167 -12.84751 -12.73854 -12.34541 -12.07539 -11.93877 -11.90491 -11.77382 -11.72792 -11.59280 -11.34780 -11.30222 -11.12331 -10.96505 -10.86167 -10.55335 -10.28560 -10.04742 -9.39361 -9.36832 -9.27158 -8.78045 -8.68095 -8.63247 -8.17199 -7.74808 -6.13905 -4.20537 1.05037 1.07528 3.13936 3.25091 3.26570 3.31566 3.33372 3.56858 3.77474 3.97542 4.34139 4.38347 4.49313 4.56336 4.62598 4.72561 4.80455 4.86674 4.94561 5.00033 5.06395 5.10997 5.12520 5.15951 5.21115 5.22048 5.29247 5.34548 5.40245 5.50657 5.58613 5.62803 5.64573 5.68833 5.75926 5.91407 5.97277 6.07673 6.13926 6.23510 6.39263 6.40776 6.59367 6.65258 6.74655 6.94240 6.97768 7.14191 7.53308 7.56749 7.58941 7.92846 8.06301 8.77981 8.96606 9.35375 9.49984 10.96280 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.001578 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.858738 B =17742.363655 C =18205.689827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.090 0.910 4 C 0.050 3.950 5 N -0.531 5.531 6 C 0.056 3.944 7 C 0.055 3.945 8 N -0.492 5.492 9 C 0.116 3.884 10 C -0.141 4.141 11 C -0.095 4.095 12 C -0.150 4.150 13 C -0.095 4.095 14 C -0.172 4.172 15 C 0.063 3.937 16 C 0.044 3.956 17 N -0.754 5.754 18 C 0.695 3.305 19 O -0.601 6.601 20 N -0.730 5.730 21 C 0.267 3.733 22 C -0.543 4.543 23 H 0.062 0.938 24 C 0.064 3.936 25 N -0.885 5.885 26 Si 0.904 3.096 27 H -0.276 1.276 28 H -0.285 1.285 29 H -0.276 1.276 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.096 0.904 48 H 0.390 0.610 49 H 0.386 0.614 50 H 0.024 0.976 51 H 0.024 0.976 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 -1.260 31.637 32.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.108 0.892 4 C -0.079 4.079 5 N -0.257 5.257 6 C -0.073 4.073 7 C -0.072 4.072 8 N -0.207 5.207 9 C 0.018 3.982 10 C -0.161 4.161 11 C -0.114 4.114 12 C -0.169 4.169 13 C -0.113 4.113 14 C -0.193 4.193 15 C -0.063 4.063 16 C -0.084 4.084 17 N -0.411 5.411 18 C 0.394 3.606 19 O -0.480 6.480 20 N -0.382 5.382 21 C 0.146 3.854 22 C -0.581 4.581 23 H 0.080 0.920 24 C -0.140 4.140 25 N -0.523 5.523 26 Si 0.731 3.269 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.114 0.886 48 H 0.222 0.778 49 H 0.218 0.782 50 H 0.042 0.958 51 H 0.042 0.958 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.642 -0.018 31.285 31.790 hybrid contribution 0.716 -1.538 -0.714 1.840 sum -4.926 -1.555 30.571 31.004 Atomic orbital electron populations 1.22098 0.95051 1.01811 1.02250 1.20707 0.94451 0.97242 0.82334 0.89182 1.22346 0.98382 0.98050 0.89097 1.62157 1.59341 1.02352 1.01807 1.22182 0.97916 0.98332 0.88823 1.22340 0.99718 0.86747 0.98424 1.59249 1.56567 1.03199 1.01722 1.18977 0.94299 0.92950 0.91995 1.20833 1.02965 0.92946 0.99400 1.21035 0.97289 0.99760 0.93307 1.21074 1.01645 0.94786 0.99433 1.21007 0.98690 0.94433 0.97207 1.21316 1.01431 1.00703 0.95873 1.22322 0.98241 0.98485 0.87220 1.22389 0.99511 0.88364 0.98112 1.45168 1.73785 1.11545 1.10581 1.16124 0.78689 0.85424 0.80330 1.90863 1.59395 1.13525 1.84245 1.45717 1.69020 1.12025 1.11396 1.18968 0.96846 0.91692 0.77872 1.21194 1.46250 0.95070 0.95592 0.92026 1.24941 0.95287 0.95304 0.98467 1.69968 1.47409 1.12973 1.21928 0.86472 0.79270 0.80490 0.80631 1.20108 1.21078 1.20120 0.92389 0.92994 0.91276 0.94021 0.90084 0.93683 0.89718 0.89646 0.92566 0.85741 0.85935 0.86297 0.86171 0.85613 0.92729 0.89493 0.93468 0.88570 0.77754 0.78213 0.95764 0.95788 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.35 37.15 0.35 -1.55 16 2 C 0.16 2.03 2.24 -67.93 -0.15 1.88 16 3 H 0.09 1.36 5.38 -51.93 -0.28 1.08 16 4 C 0.05 0.48 4.75 -3.82 -0.02 0.46 16 5 N -0.53 -4.82 4.19 -234.46 -0.98 -5.80 16 6 C 0.06 0.43 5.62 -3.77 -0.02 0.41 16 7 C 0.05 0.41 4.29 -3.77 -0.02 0.39 16 8 N -0.49 -4.36 4.75 -170.96 -0.81 -5.17 16 9 C 0.12 1.03 5.64 -83.79 -0.47 0.56 16 10 C -0.14 -1.20 9.19 -39.38 -0.36 -1.56 16 11 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 12 C -0.15 -1.07 10.04 -39.55 -0.40 -1.47 16 13 C -0.09 -0.69 10.04 -39.61 -0.40 -1.08 16 14 C -0.17 -1.38 8.82 -39.38 -0.35 -1.73 16 15 C 0.06 0.55 5.38 -3.77 -0.02 0.53 16 16 C 0.04 0.43 5.13 -3.76 -0.02 0.41 16 17 N -0.75 -11.05 5.05 -58.68 -0.30 -11.35 16 18 C 0.69 14.28 8.56 -86.92 -0.74 13.54 16 19 O -0.60 -14.95 15.94 5.29 0.08 -14.87 16 20 N -0.73 -15.65 5.55 -66.41 -0.37 -16.02 16 21 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 22 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 23 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 24 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 26 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.56 7.17 -51.93 -0.37 0.18 16 38 H 0.06 0.43 7.58 -51.93 -0.39 0.04 16 39 H 0.12 0.97 7.19 -52.49 -0.38 0.60 16 40 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.83 5.81 -52.49 -0.31 0.53 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.71 6.82 -51.93 -0.35 0.35 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 1.01 5.91 -51.93 -0.31 0.71 16 48 H 0.39 4.53 8.65 -40.82 -0.35 4.18 16 49 H 0.39 7.05 8.34 -40.82 -0.34 6.71 16 50 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 52 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 410.91 15.07 6.19 6.19 Total: -1.00 -33.32 410.91 -12.44 -45.76 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -8.51 Total: 7.51 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -3.46 Total: 3.37 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -1.72 Total: -63.86 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.32 -12.44 -45.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426419859.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.801 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds